Strain Fitness in Sphingobium sp. HT1-2 around GFF1841

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,862,902	-		GFF1840	0.62	-1.6
1,862,911	+		GFF1840	0.62	-1.4
1,862,918	+		GFF1840	0.62	-0.9
1,862,918	+		GFF1840	0.62	-0.6
1,862,919	-		GFF1840	0.62	-0.5
1,862,952	+		GFF1840	0.64	+1.0
1,862,959	-		GFF1840	0.64	-0.5
1,862,995	+		GFF1840	0.65	-0.6
1,863,024	+		GFF1840	0.67	-0.1
1,863,090	+		GFF1840	0.69	+0.3
1,863,095	+		GFF1840	0.69	-0.4
1,863,101	+		GFF1840	0.70	-0.7
1,863,106	+		GFF1840	0.70	-1.3
1,863,111	+		GFF1840	0.70	-0.4
1,863,111	+		GFF1840	0.70	+0.4
1,863,111	+		GFF1840	0.70	-1.0
1,863,112	+		GFF1840	0.70	+0.7
1,863,119	-		GFF1840	0.70	-0.7
1,863,138	+		GFF1840	0.71	-0.6
1,863,165	+		GFF1840	0.72	-0.1
1,863,167	+		GFF1840	0.72	+0.1
1,863,167	+		GFF1840	0.72	+0.1
1,863,175	-		GFF1840	0.72	+0.2
1,863,189	+		GFF1840	0.73	-0.6
1,863,194	+		GFF1840	0.73	+0.4
1,863,214	+		GFF1840	0.74	+0.9
1,863,214	+		GFF1840	0.74	+0.3
1,863,214	+		GFF1840	0.74	+0.7
1,863,214	-		GFF1840	0.74	+1.2
1,863,222	-		GFF1840	0.74	-2.5
1,863,222	-		GFF1840	0.74	+0.3
1,863,222	-		GFF1840	0.74	-0.3
1,863,222	-		GFF1840	0.74	-0.2
1,863,222	-		GFF1840	0.74	-1.8
1,863,232	-		GFF1840	0.75	-0.6
1,863,235	-		GFF1840	0.75	+0.2
1,863,235	-		GFF1840	0.75	-1.4
1,863,242	+		GFF1840	0.75	+0.0
1,863,242	+		GFF1840	0.75	-1.1
1,863,242	+		GFF1840	0.75	+0.5
1,863,242	+		GFF1840	0.75	+0.1
1,863,242	+		GFF1840	0.75	+0.5
1,863,242	+		GFF1840	0.75	-0.3
1,863,242	+		GFF1840	0.75	-1.9
1,863,247	+		GFF1840	0.75	-1.0
1,863,247	+		GFF1840	0.75	+0.6
1,863,247	+		GFF1840	0.75	+1.2
1,863,247	+		GFF1840	0.75	-2.0
1,863,247	+		GFF1840	0.75	+0.4
1,863,247	+		GFF1840	0.75	+0.1
1,863,247	+		GFF1840	0.75	-0.6
1,863,247	+		GFF1840	0.75	+1.0
1,863,247	+		GFF1840	0.75	-0.3
1,863,247	+		GFF1840	0.75	+0.4
1,863,247	+		GFF1840	0.75	+0.4
1,863,247	+		GFF1840	0.75	+0.6
1,863,250	-		GFF1840	0.75	+0.2
1,863,255	-		GFF1840	0.76	+0.8
1,863,255	-		GFF1840	0.76	-2.9
1,863,255	-		GFF1840	0.76	-0.8
1,863,255	-		GFF1840	0.76	-1.6
1,863,255	-		GFF1840	0.76	-1.7
1,863,255	-		GFF1840	0.76	+0.3
1,863,255	-		GFF1840	0.76	-1.2
1,863,255	-		GFF1840	0.76	-1.0
1,863,255	-		GFF1840	0.76	+1.2
1,863,273	+		GFF1840	0.76	-0.1
1,863,281	-		GFF1840	0.77	-1.0
1,863,307	+		GFF1840	0.78	+1.0
1,863,307	+		GFF1840	0.78	-2.5
1,863,309	+		GFF1840	0.78	-0.9
1,863,312	-		GFF1840	0.78	-1.3
1,863,312	-		GFF1840	0.78	-1.9
1,863,315	-		GFF1840	0.78	-1.0
1,863,315	-		GFF1840	0.78	-1.1
1,863,315	-		GFF1840	0.78	-0.4
1,863,317	-		GFF1840	0.78	-0.7
1,863,317	-		GFF1840	0.78	+0.7
1,863,330	+		GFF1840	0.79	-0.6
1,863,330	+		GFF1840	0.79	-0.5
1,863,330	+		GFF1840	0.79	-0.0
1,863,335	+		GFF1840	0.79	-1.5
1,863,359	-		GFF1840	0.80	+0.7
1,863,372	+		GFF1840	0.80	-0.8
1,863,372	+		GFF1840	0.80	-2.2
1,863,380	-		GFF1840	0.81	-1.1
1,863,380	-		GFF1840	0.81	+0.7
1,863,399	+		GFF1840	0.81	+0.5
1,863,407	-		GFF1840	0.82	-1.9
1,863,407	-		GFF1840	0.82	-2.8
1,863,407	-		GFF1840	0.82	+1.6
1,863,407	-		GFF1840	0.82	-0.5
1,863,408	-		GFF1840	0.82	+0.7
1,863,410	+		GFF1840	0.82	-1.2
1,863,410	+		GFF1840	0.82	+0.3
1,863,417	+		GFF1840	0.82	-1.6
1,863,417	+		GFF1840	0.82	+0.7
1,863,423	+		GFF1840	0.82	+0.6
1,863,425	-		GFF1840	0.82	-1.1
1,863,431	-		GFF1840	0.83	-0.8
1,863,453	-		GFF1840	0.83	-1.5
1,863,489	-		GFF1840	0.85	-0.6
1,863,491	-		GFF1840	0.85	+0.1
1,863,495	-		GFF1840	0.85	+0.1
1,863,505	-		GFF1840	0.86	-1.1
1,863,515	+		GFF1840	0.86	-2.2
1,863,536	-		GFF1840	0.87	-1.2
1,863,559	+		GFF1840	0.88	-2.5
1,863,569	+		GFF1840	0.88	-0.3
1,863,569	+		GFF1840	0.88	+0.3
1,863,569	+		GFF1840	0.88	-0.5
1,863,569	+		GFF1840	0.88	+1.9
1,863,569	+		GFF1840	0.88	+0.8
1,863,569	+		GFF1840	0.88	+0.5
1,863,569	+		GFF1840	0.88	+0.3
1,863,569	+		GFF1840	0.88	-1.5
1,863,569	+		GFF1840	0.88	-1.2
1,863,577	-		GFF1840	0.88	-0.2
1,863,577	-		GFF1840	0.88	+0.1
1,863,577	-		GFF1840	0.88	-0.3
1,863,609	-		GFF1840	0.90	+1.4
1,863,609	-		GFF1840	0.90	-0.6
1,863,632	+				-0.3
1,863,645	+				-0.8
1,863,657	+				-0.9
1,863,667	+				-1.0
1,863,667	+				-0.7
1,863,667	+				-1.6
1,863,670	-				+0.4
1,863,675	-				+0.1
1,863,675	-				+0.2
1,863,675	-				+0.5
1,863,675	-				+0.2
1,863,675	-				-0.1
1,863,675	-				+0.0
1,863,675	-				-0.3
1,863,675	-				-1.3
1,863,675	-				-1.8
1,863,675	-				+0.7
1,863,675	-				-0.3
1,863,675	-				-0.2
1,863,675	-				-1.7
1,863,675	-				-0.6
1,863,677	+				-0.5
1,863,677	+				-2.0
1,863,677	+				+0.6
1,863,680	-				+1.5
1,863,680	-				+0.1
1,863,680	-				-1.2
1,863,685	-				-1.2
1,863,685	-				-0.0
1,863,685	-				-1.4
1,863,685	-				-0.5
1,863,694	+				-1.3
1,863,702	+				-2.2
1,863,702	-				+0.4
1,863,723	+				-0.2
1,863,730	-				+1.9
1,863,736	-				-0.3
1,863,786	-				-0.8
1,863,798	+				-1.6
1,863,804	+				+0.4
1,863,814	+				-1.0
1,863,814	-				-1.8
1,863,829	+				-0.5
1,863,829	+				+0.4
1,863,835	-				-0.9
1,863,835	-				+0.4
1,863,835	-				+0.8
1,863,837	+				-0.0
1,863,837	+				-1.3
1,863,837	-				-2.6
1,863,837	-				-0.9
1,863,837	-				-0.9
1,863,837	-				-0.7
1,863,872	+				+0.1
1,863,880	-				+1.2
1,863,882	+				-1.3
1,863,882	+				-1.6
1,863,890	-				+0.4
1,863,895	-				-1.2
1,863,896	-				-1.1
1,863,905	+				+1.4
1,863,913	-				+0.5
1,863,921	+				+0.4
1,863,926	+				+0.3
1,863,929	-				-0.3
1,863,952	+				+0.0
1,863,999	-				-1.1
1,864,002	+				+0.2
1,864,002	+				-0.3
1,864,010	-				+0.2
1,864,012	+				-0.1
1,864,017	+				-0.6
1,864,025	+				+0.2
1,864,025	+				+1.5
1,864,025	+				-1.5
1,864,035	+				-0.4
1,864,050	+		GFF1841	0.10	-1.1
1,864,078	+		GFF1841	0.12	+0.8
1,864,078	+		GFF1841	0.12	-0.1
1,864,078	+		GFF1841	0.12	+0.2
1,864,078	+		GFF1841	0.12	-0.2
1,864,078	+		GFF1841	0.12	-0.8
1,864,078	+		GFF1841	0.12	+0.9
1,864,078	+		GFF1841	0.12	+0.9
1,864,086	-		GFF1841	0.12	-0.5
1,864,086	-		GFF1841	0.12	-0.7
1,864,086	-		GFF1841	0.12	-0.5
1,864,086	-		GFF1841	0.12	-0.3
1,864,113	-		GFF1841	0.14	+0.3
1,864,125	+		GFF1841	0.15	-0.9
1,864,125	+		GFF1841	0.15	-1.5
1,864,125	+		GFF1841	0.15	+1.5
1,864,130	+		GFF1841	0.15	+0.3
1,864,130	+		GFF1841	0.15	-0.6
1,864,130	+		GFF1841	0.15	+0.0
1,864,130	+		GFF1841	0.15	-1.0
1,864,135	+		GFF1841	0.15	-1.1
1,864,138	-		GFF1841	0.15	-1.8
1,864,138	-		GFF1841	0.15	-0.6
1,864,138	-		GFF1841	0.15	+0.9
1,864,138	-		GFF1841	0.15	-0.1
1,864,138	-		GFF1841	0.15	-0.9
1,864,138	-		GFF1841	0.15	-0.2
1,864,138	-		GFF1841	0.15	-0.2
1,864,138	-		GFF1841	0.15	+0.2
1,864,138	-		GFF1841	0.15	-0.2
1,864,138	-		GFF1841	0.15	+0.7
1,864,138	-		GFF1841	0.15	+0.9
1,864,138	-		GFF1841	0.15	+1.0
1,864,143	-		GFF1841	0.16	-1.0
1,864,143	-		GFF1841	0.16	+0.3
1,864,143	-		GFF1841	0.16	-0.1
1,864,145	+		GFF1841	0.16	-1.0
1,864,153	-		GFF1841	0.16	-0.5
1,864,167	-		GFF1841	0.17	-0.2
1,864,172	-		GFF1841	0.17	-1.6
1,864,172	-		GFF1841	0.17	-2.0
1,864,179	+		GFF1841	0.18	-0.3
1,864,180	+		GFF1841	0.18	-0.2
1,864,180	+		GFF1841	0.18	+0.2
1,864,209	+		GFF1841	0.20	-1.6
1,864,219	+		GFF1841	0.20	-0.2
1,864,219	+		GFF1841	0.20	-0.1
1,864,261	+		GFF1841	0.23	-0.6
1,864,261	+		GFF1841	0.23	-0.6
1,864,261	+		GFF1841	0.23	+0.5
1,864,261	+		GFF1841	0.23	-2.3
1,864,261	+		GFF1841	0.23	-2.0
1,864,261	+		GFF1841	0.23	-2.5
1,864,261	+		GFF1841	0.23	+1.4
1,864,261	+		GFF1841	0.23	+0.5
1,864,261	+		GFF1841	0.23	-0.9
1,864,261	+		GFF1841	0.23	-0.7
1,864,261	+		GFF1841	0.23	+0.1
1,864,261	+		GFF1841	0.23	-0.7
1,864,267	+		GFF1841	0.23	+0.5
1,864,269	-		GFF1841	0.23	-0.9
1,864,269	-		GFF1841	0.23	-2.1
1,864,269	-		GFF1841	0.23	-0.3
1,864,269	-		GFF1841	0.23	-1.2
1,864,269	-		GFF1841	0.23	-0.2
1,864,269	-		GFF1841	0.23	+0.8
1,864,269	-		GFF1841	0.23	+0.5
1,864,269	-		GFF1841	0.23	-0.6
1,864,274	-		GFF1841	0.24	-2.6
1,864,281	+		GFF1841	0.24	+0.4
1,864,309	+		GFF1841	0.26	+0.8
1,864,309	+		GFF1841	0.26	+0.1
1,864,309	+		GFF1841	0.26	-0.3
1,864,309	+		GFF1841	0.26	+0.7
1,864,309	+		GFF1841	0.26	-0.5
1,864,309	+		GFF1841	0.26	-1.2
1,864,317	-		GFF1841	0.26	-0.4
1,864,334	+		GFF1841	0.27	+0.8
1,864,335	+		GFF1841	0.27	-1.3
1,864,335	+		GFF1841	0.27	+0.4
1,864,335	+		GFF1841	0.27	-1.6
1,864,342	+		GFF1841	0.28	+1.0
1,864,342	-		GFF1841	0.28	-1.5
1,864,343	-		GFF1841	0.28	+0.2
1,864,343	-		GFF1841	0.28	-2.9
1,864,363	+		GFF1841	0.29	+0.6
1,864,365	-		GFF1841	0.29	+0.8
1,864,479	-		GFF1841	0.36	+0.3
1,864,489	+		GFF1841	0.37	-0.2
1,864,507	-		GFF1841	0.38	+0.4
1,864,525	-		GFF1841	0.39	-0.7
1,864,527	+		GFF1841	0.39	+1.4
1,864,538	+		GFF1841	0.40	-0.7
1,864,538	+		GFF1841	0.40	-0.5
1,864,538	+		GFF1841	0.40	+0.8
1,864,538	+		GFF1841	0.40	+2.2
1,864,538	+		GFF1841	0.40	+0.9
1,864,538	+		GFF1841	0.40	-0.1
1,864,538	+		GFF1841	0.40	-0.4
1,864,538	+		GFF1841	0.40	+0.4
1,864,538	+		GFF1841	0.40	+0.2
1,864,538	+		GFF1841	0.40	-1.0
1,864,543	+		GFF1841	0.40	+0.6
1,864,546	-		GFF1841	0.40	-1.2
1,864,546	-		GFF1841	0.40	-0.0
1,864,546	-		GFF1841	0.40	+1.1
1,864,546	-		GFF1841	0.40	+0.7
1,864,546	-		GFF1841	0.40	+0.2
1,864,546	-		GFF1841	0.40	-0.8
1,864,551	-		GFF1841	0.40	-1.0
1,864,553	+		GFF1841	0.40	-1.3
1,864,553	+		GFF1841	0.40	+0.6
1,864,553	+		GFF1841	0.40	-1.3
1,864,553	+		GFF1841	0.40	+0.3
1,864,553	+		GFF1841	0.40	-2.6
1,864,553	+		GFF1841	0.40	+1.0
1,864,561	-		GFF1841	0.41	-0.7
1,864,561	-		GFF1841	0.41	-1.3
1,864,561	-		GFF1841	0.41	-0.2
1,864,561	-		GFF1841	0.41	+0.1
1,864,561	-		GFF1841	0.41	+0.4
1,864,561	-		GFF1841	0.41	-0.5
1,864,561	-		GFF1841	0.41	-1.7
1,864,561	-		GFF1841	0.41	-0.1
1,864,561	-		GFF1841	0.41	-0.1
1,864,561	-		GFF1841	0.41	+0.1
1,864,561	-		GFF1841	0.41	-0.3
1,864,561	-		GFF1841	0.41	-0.4
1,864,571	-		GFF1841	0.42	+0.5
1,864,594	-		GFF1841	0.43	-0.5
1,864,632	-		GFF1841	0.45	+0.1
1,864,651	+		GFF1841	0.46	+0.5
1,864,651	+		GFF1841	0.46	+1.6
1,864,667	+		GFF1841	0.47	-0.0
1,864,667	+		GFF1841	0.47	-0.5
1,864,672	+		GFF1841	0.48	-0.5
1,864,672	+		GFF1841	0.48	+0.0
1,864,677	+		GFF1841	0.48	-1.2
1,864,680	-		GFF1841	0.48	-0.5
1,864,680	-		GFF1841	0.48	-0.2
1,864,680	-		GFF1841	0.48	+0.3
1,864,680	-		GFF1841	0.48	-1.3
1,864,680	-		GFF1841	0.48	-0.2
1,864,708	+		GFF1841	0.50	-1.3
1,864,708	+		GFF1841	0.50	+1.7
1,864,708	+		GFF1841	0.50	-0.7
1,864,711	-		GFF1841	0.50	-1.6
1,864,716	-		GFF1841	0.50	+0.4
1,864,716	-		GFF1841	0.50	+1.2
1,864,764	+		GFF1841	0.53	-1.2
1,864,773	-		GFF1841	0.54	+0.1
1,864,774	+		GFF1841	0.54	-1.2
1,864,775	+		GFF1841	0.54	+0.5
1,864,776	-		GFF1841	0.54	-0.3
1,864,802	+		GFF1841	0.56	-2.8
1,864,811	+		GFF1841	0.56	-0.4
1,864,811	+		GFF1841	0.56	+1.0
1,864,826	+		GFF1841	0.57	+0.6
1,864,858	+		GFF1841	0.59	-0.3
1,864,866	-		GFF1841	0.59	+0.1
1,864,911	+		GFF1841	0.62	-1.1
1,864,925	-		GFF1841	0.63	-0.7
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1,865,393	+				+1.1
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1,865,394	+				-0.3
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1,865,397	+				-0.2
1,865,402	-				-0.6
1,865,402	-				-1.7
1,865,402	-				-1.8
1,865,412	-				-1.2
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1,865,486	+				+0.2
1,865,486	+				+0.8
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1,865,547	-				-0.9
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