Strain Fitness in Sphingobium sp. HT1-2 around GFF1822

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,841,795	-		GFF1820	0.25	-2.6
1,841,803	-		GFF1820	0.26	-0.6
1,841,810	+		GFF1820	0.27	-2.3
1,841,822	+		GFF1820	0.28	-0.9
1,841,822	+		GFF1820	0.28	-0.0
1,841,841	-		GFF1820	0.31	+0.4
1,841,842	-		GFF1820	0.31	-0.4
1,841,894	+		GFF1820	0.38	-2.0
1,841,908	+		GFF1820	0.39	-0.5
1,841,908	+		GFF1820	0.39	-0.5
1,841,916	-		GFF1820	0.40	-1.9
1,841,926	+		GFF1820	0.42	+0.2
1,841,947	-		GFF1820	0.44	-0.3
1,841,963	+		GFF1820	0.46	-1.4
1,841,963	+		GFF1820	0.46	-0.9
1,841,963	+		GFF1820	0.46	-1.8
1,841,963	+		GFF1820	0.46	-0.2
1,841,963	+		GFF1820	0.46	+0.6
1,841,971	-		GFF1820	0.48	+0.2
1,841,972	-		GFF1820	0.48	+0.5
1,841,973	+		GFF1820	0.48	+0.7
1,841,973	+		GFF1820	0.48	+0.8
1,841,979	-		GFF1820	0.49	+1.4
1,841,981	-		GFF1820	0.49	+0.4
1,841,981	-		GFF1820	0.49	+0.5
1,841,981	-		GFF1820	0.49	-0.3
1,841,981	-		GFF1820	0.49	+0.3
1,841,981	-		GFF1820	0.49	+0.6
1,841,981	-		GFF1820	0.49	-0.8
1,841,981	-		GFF1820	0.49	+0.2
1,841,981	-		GFF1820	0.49	-2.0
1,841,988	+		GFF1820	0.50	-1.4
1,841,993	+		GFF1820	0.50	+0.4
1,841,993	+		GFF1820	0.50	+1.2
1,841,996	-		GFF1820	0.51	+0.3
1,842,001	-		GFF1820	0.51	-0.6
1,842,001	-		GFF1820	0.51	+0.6
1,842,015	-		GFF1820	0.53	+0.1
1,842,064	+		GFF1820	0.59	-0.6
1,842,068	+		GFF1820	0.60	-1.8
1,842,072	-		GFF1820	0.60	+0.7
1,842,091	-		GFF1820	0.63	+0.9
1,842,106	-		GFF1820	0.65	-0.7
1,842,108	+		GFF1820	0.65	-0.8
1,842,118	+		GFF1820	0.66	-0.2
1,842,118	+		GFF1820	0.66	-1.1
1,842,118	+		GFF1820	0.66	-1.5
1,842,120	+		GFF1820	0.67	+0.8
1,842,123	+		GFF1820	0.67	+0.4
1,842,123	+		GFF1820	0.67	+0.0
1,842,126	-		GFF1820	0.67	+0.5
1,842,126	-		GFF1820	0.67	-0.2
1,842,126	-		GFF1820	0.67	+0.5
1,842,131	-		GFF1820	0.68	-1.7
1,842,144	+		GFF1820	0.70	-0.6
1,842,146	+		GFF1820	0.70	-1.1
1,842,154	-		GFF1820	0.71	-1.7
1,842,155	+		GFF1820	0.71	-0.9
1,842,155	+		GFF1820	0.71	+1.2
1,842,157	-		GFF1820	0.71	-0.3
1,842,163	-		GFF1820	0.72	-0.4
1,842,163	-		GFF1820	0.72	-0.2
1,842,163	-		GFF1820	0.72	-1.5
1,842,163	-		GFF1820	0.72	-0.6
1,842,176	+		GFF1820	0.74	-0.4
1,842,178	+		GFF1820	0.74	+0.3
1,842,193	+		GFF1820	0.76	-1.2
1,842,194	+		GFF1820	0.76	-0.3
1,842,240	+		GFF1820	0.82	-0.1
1,842,248	+		GFF1820	0.83	+0.7
1,842,255	+		GFF1820	0.84	+0.9
1,842,284	+		GFF1820	0.87	+1.4
1,842,291	+		GFF1820	0.88	-1.8
1,842,291	+		GFF1820	0.88	-0.1
1,842,297	-		GFF1820	0.89	-0.3
1,842,350	+				-0.2
1,842,360	+				-1.6
1,842,360	+				-0.6
1,842,360	+				-0.6
1,842,361	+				-1.2
1,842,368	-				+0.2
1,842,368	-				-0.1
1,842,375	+				-0.1
1,842,375	+				-1.5
1,842,375	+				-0.1
1,842,375	+				+0.3
1,842,385	+				+0.3
1,842,395	+				-0.3
1,842,403	-				+0.0
1,842,410	+				+0.2
1,842,410	+				-0.2
1,842,462	+		GFF1821	0.21	-0.1
1,842,470	-		GFF1821	0.23	+0.5
1,842,488	+		GFF1821	0.28	-0.9
1,842,494	+		GFF1821	0.29	-0.0
1,842,504	+		GFF1821	0.32	+0.5
1,842,504	+		GFF1821	0.32	-0.2
1,842,528	+		GFF1821	0.38	-1.0
1,842,533	+		GFF1821	0.40	-0.4
1,842,533	+		GFF1821	0.40	-0.6
1,842,541	-		GFF1821	0.42	-1.6
1,842,541	-		GFF1821	0.42	+0.3
1,842,543	+		GFF1821	0.42	-1.6
1,842,551	-		GFF1821	0.44	-1.1
1,842,551	-		GFF1821	0.44	-2.0
1,842,551	-		GFF1821	0.44	-1.3
1,842,555	+		GFF1821	0.45	-0.9
1,842,579	-		GFF1821	0.52	-0.2
1,842,594	-		GFF1821	0.55	-0.6
1,842,614	-		GFF1821	0.61	-1.3
1,842,632	-		GFF1821	0.65	+1.2
1,842,632	-		GFF1821	0.65	-1.1
1,842,642	+		GFF1821	0.68	+0.5
1,842,642	+		GFF1821	0.68	+0.9
1,842,644	+		GFF1821	0.68	-1.2
1,842,644	+		GFF1821	0.68	-1.2
1,842,644	+		GFF1821	0.68	-0.1
1,842,650	-		GFF1821	0.70	-1.5
1,842,650	-		GFF1821	0.70	+0.4
1,842,692	+		GFF1821	0.81	+0.6
1,842,700	-		GFF1821	0.83	+0.5
1,842,721	-		GFF1821	0.89	-0.6
1,842,731	+				+0.1
1,842,740	+				-2.0
1,842,740	-				+0.5
1,842,763	-				-1.5
1,842,777	+				+0.0
1,842,814	-				-0.8
1,842,822	+				-1.3
1,842,849	+		GFF1822	0.12	+0.4
1,842,899	+		GFF1822	0.18	+0.4
1,842,899	+		GFF1822	0.18	+0.2
1,842,907	-		GFF1822	0.19	-1.2
1,842,917	-		GFF1822	0.20	+1.2
1,842,927	+		GFF1822	0.22	-1.4
1,842,928	+		GFF1822	0.22	-0.5
1,842,955	+		GFF1822	0.25	+0.8
1,842,955	+		GFF1822	0.25	+1.1
1,842,958	-		GFF1822	0.26	-0.3
1,842,967	-		GFF1822	0.27	-0.5
1,842,989	+		GFF1822	0.30	-2.0
1,842,990	-		GFF1822	0.30	-0.6
1,842,994	+		GFF1822	0.30	-1.0
1,843,025	+		GFF1822	0.34	+0.9
1,843,030	+		GFF1822	0.35	+1.1
1,843,030	+		GFF1822	0.35	-1.2
1,843,033	-		GFF1822	0.35	+0.0
1,843,033	-		GFF1822	0.35	-1.3
1,843,033	-		GFF1822	0.35	+0.3
1,843,049	+		GFF1822	0.37	+0.1
1,843,049	+		GFF1822	0.37	-0.8
1,843,049	+		GFF1822	0.37	+1.4
1,843,057	-		GFF1822	0.38	-0.9
1,843,057	-		GFF1822	0.38	-0.3
1,843,057	-		GFF1822	0.38	+0.3
1,843,089	+		GFF1822	0.42	-0.7
1,843,120	+		GFF1822	0.46	+0.9
1,843,122	-		GFF1822	0.47	-0.4
1,843,124	+		GFF1822	0.47	+0.2
1,843,124	+		GFF1822	0.47	-1.0
1,843,147	+		GFF1822	0.50	-1.2
1,843,161	-		GFF1822	0.52	+0.4
1,843,164	-		GFF1822	0.52	-0.5
1,843,199	-		GFF1822	0.56	+0.5
1,843,201	+		GFF1822	0.57	+0.2
1,843,209	+		GFF1822	0.58	+0.4
1,843,218	+		GFF1822	0.59	-0.8
1,843,226	-		GFF1822	0.60	+0.8
1,843,231	+		GFF1822	0.61	-1.2
1,843,231	-		GFF1822	0.61	+0.5
1,843,250	+		GFF1822	0.63	+0.8
1,843,250	+		GFF1822	0.63	-0.5
1,843,250	+		GFF1822	0.63	-0.2
1,843,253	-		GFF1822	0.63	-0.8
1,843,255	+		GFF1822	0.64	-1.3
1,843,258	-		GFF1822	0.64	-0.6
1,843,263	-		GFF1822	0.65	-0.3
1,843,289	-		GFF1822	0.68	-1.3
1,843,295	+		GFF1822	0.69	-1.2
1,843,295	+		GFF1822	0.69	-0.9
1,843,303	-		GFF1822	0.70	+0.7
1,843,316	-		GFF1822	0.71	-0.6
1,843,318	+		GFF1822	0.72	-2.7
1,843,318	+		GFF1822	0.72	-1.0
1,843,318	+		GFF1822	0.72	-0.1
1,843,325	+		GFF1822	0.73	+1.5
1,843,326	-		GFF1822	0.73	-0.5
1,843,326	-		GFF1822	0.73	-0.0
1,843,331	-		GFF1822	0.73	-1.1
1,843,331	-		GFF1822	0.73	-1.5
1,843,331	-		GFF1822	0.73	+0.6
1,843,333	-		GFF1822	0.74	-0.8
1,843,333	-		GFF1822	0.74	+0.9
1,843,348	-		GFF1822	0.75	-1.6
1,843,366	+		GFF1822	0.78	-0.6
1,843,366	+		GFF1822	0.78	-1.2
1,843,366	+		GFF1822	0.78	-1.1
1,843,374	-		GFF1822	0.79	-2.1
1,843,374	-		GFF1822	0.79	-0.1
1,843,374	-		GFF1822	0.79	+0.3
1,843,374	-		GFF1822	0.79	+0.2
1,843,374	-		GFF1822	0.79	-2.2
1,843,402	+		GFF1822	0.82	+0.2
1,843,407	+		GFF1822	0.83	+0.1
1,843,410	-		GFF1822	0.83	+0.4
1,843,423	-		GFF1822	0.85	-0.3
1,843,443	+		GFF1822	0.88	-0.3
1,843,443	+		GFF1822	0.88	-0.4
1,843,443	+		GFF1822	0.88	+0.6
1,843,443	+		GFF1822	0.88	-1.4
1,843,443	+		GFF1822	0.88	+0.5
1,843,443	+		GFF1822	0.88	-0.1
1,843,443	+		GFF1822	0.88	+0.5
1,843,443	+		GFF1822	0.88	+0.2
1,843,443	+		GFF1822	0.88	+0.4
1,843,443	+		GFF1822	0.88	-2.1
1,843,443	+		GFF1822	0.88	-1.6
1,843,443	+		GFF1822	0.88	+1.0
1,843,443	+		GFF1822	0.88	-1.9
1,843,443	+		GFF1822	0.88	-0.5
1,843,443	+		GFF1822	0.88	-1.0
1,843,451	-		GFF1822	0.89	+0.6
1,843,451	-		GFF1822	0.89	+0.5
1,843,451	-		GFF1822	0.89	-0.2
1,843,451	-		GFF1822	0.89	-2.1
1,843,451	-		GFF1822	0.89	-1.3
1,843,451	-		GFF1822	0.89	-0.3
1,843,451	-		GFF1822	0.89	-0.6
1,843,451	-		GFF1822	0.89	-1.5
1,843,451	-		GFF1822	0.89	-0.9
1,843,451	-		GFF1822	0.89	+0.5
1,843,451	-		GFF1822	0.89	+0.7
1,843,451	-		GFF1822	0.89	-0.8
1,843,451	-		GFF1822	0.89	-0.0
1,843,451	-		GFF1822	0.89	+0.5
1,843,451	-		GFF1822	0.89	-1.3
1,843,486	-				-0.0
1,843,516	+				-2.1
1,843,516	+				-1.1
1,843,519	-				+0.6
1,843,524	-				-0.5
1,843,534	+				-2.1
1,843,534	+				+0.2
1,843,535	-				-0.1
1,843,549	+				-1.0
1,843,573	+				-0.5
1,843,628	-				+0.2
1,843,628	-				-0.5
1,843,688	-		GFF1823	0.13	+0.3
1,843,689	-		GFF1823	0.13	+0.3
1,843,701	+		GFF1823	0.14	-0.1
1,843,715	+		GFF1823	0.16	+0.4
1,843,736	+		GFF1823	0.18	-2.6
1,843,743	+		GFF1823	0.18	-1.1
1,843,743	+		GFF1823	0.18	-1.6
1,843,751	-		GFF1823	0.19	-0.3
1,843,761	+		GFF1823	0.20	+0.9
1,843,761	+		GFF1823	0.20	+0.4
1,843,761	+		GFF1823	0.20	-1.2
1,843,769	-		GFF1823	0.21	-0.2
1,843,780	-		GFF1823	0.22	+0.3
1,843,782	+		GFF1823	0.22	-1.2
1,843,782	+		GFF1823	0.22	-1.6
1,843,783	+		GFF1823	0.22	-0.1
1,843,784	+		GFF1823	0.22	-2.6
1,843,791	-		GFF1823	0.23	-0.5
1,843,792	-		GFF1823	0.23	-0.9
1,843,803	+		GFF1823	0.24	-0.7
1,843,811	-		GFF1823	0.24	-2.1
1,843,825	+		GFF1823	0.26	-0.2
1,843,843	+		GFF1823	0.27	-0.2
1,843,843	+		GFF1823	0.27	-0.1
1,843,846	-		GFF1823	0.28	+0.2
1,843,851	+		GFF1823	0.28	+0.5
1,843,851	-		GFF1823	0.28	+0.3
1,843,851	-		GFF1823	0.28	+0.5
1,843,851	-		GFF1823	0.28	+1.2
1,843,852	-		GFF1823	0.28	+1.1
1,843,866	+		GFF1823	0.29	+0.2
1,843,888	-		GFF1823	0.31	-1.3
1,843,889	-		GFF1823	0.32	-0.7
1,843,889	-		GFF1823	0.32	-1.6
1,843,914	+		GFF1823	0.34	+0.4
1,843,924	+		GFF1823	0.35	-0.1
1,843,962	+		GFF1823	0.38	-2.3
1,843,968	-		GFF1823	0.39	+1.0
1,843,968	-		GFF1823	0.39	-1.1
1,843,970	+		GFF1823	0.39	+1.5
1,843,970	-		GFF1823	0.39	-0.5
1,843,970	-		GFF1823	0.39	-0.2
1,844,026	+		GFF1823	0.44	-2.2
1,844,027	-		GFF1823	0.44	+0.0
1,844,033	+		GFF1823	0.45	-0.5
1,844,033	-		GFF1823	0.45	+0.1
1,844,058	+		GFF1823	0.47	+1.5
1,844,058	+		GFF1823	0.47	+0.4
1,844,062	+		GFF1823	0.47	+1.1
1,844,076	-		GFF1823	0.49	-0.8
1,844,095	+		GFF1823	0.50	-0.8
1,844,100	+		GFF1823	0.51	+0.4
1,844,100	+		GFF1823	0.51	-0.1
1,844,108	-		GFF1823	0.52	-1.1
1,844,120	+		GFF1823	0.53	-2.8
1,844,120	+		GFF1823	0.53	-1.2
1,844,120	+		GFF1823	0.53	-1.5
1,844,120	+		GFF1823	0.53	-0.7
1,844,120	+		GFF1823	0.53	+0.0
1,844,128	-		GFF1823	0.53	-1.2
1,844,128	-		GFF1823	0.53	-2.1
1,844,128	-		GFF1823	0.53	-0.2
1,844,128	-		GFF1823	0.53	+0.1
1,844,147	+		GFF1823	0.55	-0.6
1,844,154	+		GFF1823	0.56	+0.8
1,844,162	-		GFF1823	0.56	+0.4
1,844,164	+		GFF1823	0.57	+1.1
1,844,164	+		GFF1823	0.57	-1.9
1,844,171	+		GFF1823	0.57	+0.4
1,844,171	+		GFF1823	0.57	-0.3
1,844,172	-		GFF1823	0.57	+0.0
1,844,172	-		GFF1823	0.57	+0.2
1,844,179	-		GFF1823	0.58	+0.2
1,844,228	+		GFF1823	0.62	-0.6
1,844,241	-		GFF1823	0.64	+0.3
1,844,246	+		GFF1823	0.64	-0.6
1,844,246	+		GFF1823	0.64	-0.6
1,844,246	+		GFF1823	0.64	-0.1
1,844,246	+		GFF1823	0.64	-2.0
1,844,246	+		GFF1823	0.64	+0.1
1,844,246	+		GFF1823	0.64	-0.5
1,844,246	+		GFF1823	0.64	+0.9
1,844,254	-		GFF1823	0.65	-1.1
1,844,254	-		GFF1823	0.65	-0.5
1,844,254	-		GFF1823	0.65	-0.0
1,844,254	-		GFF1823	0.65	-0.1
1,844,254	-		GFF1823	0.65	+0.4
1,844,263	+		GFF1823	0.66	-0.4
1,844,271	-		GFF1823	0.66	+0.9
1,844,271	-		GFF1823	0.66	-1.2
1,844,271	-		GFF1823	0.66	-0.6
1,844,272	-		GFF1823	0.66	+0.4
1,844,316	+		GFF1823	0.71	-0.8
1,844,324	-		GFF1823	0.71	-0.4
1,844,324	-		GFF1823	0.71	+1.1
1,844,342	-		GFF1823	0.73	-1.5
1,844,369	+		GFF1823	0.75	-1.7
1,844,410	+		GFF1823	0.79	+0.0
1,844,410	+		GFF1823	0.79	-1.6
1,844,416	+		GFF1823	0.80	-0.2
1,844,442	-		GFF1823	0.82	+0.1
1,844,452	+		GFF1823	0.83	-1.3
1,844,452	+		GFF1823	0.83	-0.6
1,844,458	-		GFF1823	0.83	-1.2
1,844,460	-		GFF1823	0.84	-1.9
1,844,467	-		GFF1823	0.84	+0.7
1,844,471	-		GFF1823	0.85	+0.7
1,844,485	+		GFF1823	0.86	-0.3
1,844,511	-		GFF1823	0.88	+1.1
1,844,511	-		GFF1823	0.88	-1.2
1,844,519	+		GFF1823	0.89	-1.6
1,844,522	+		GFF1823	0.89	-0.3
1,844,530	-				-0.5