Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF180 and GFF181 are separated by 233 nucleotides GFF181 and GFF182 are separated by 265 nucleotides GFF182 and GFF183 are separated by 170 nucleotides GFF183 and GFF184 are separated by 134 nucleotides
GFF180 - SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182), at 183,593 to 184,447
GFF180
GFF181 - hypothetical protein, at 184,681 to 184,911
GFF181
GFF182 - hypothetical protein, at 185,177 to 185,659
GFF182
GFF183 - Transcriptional regulator, AcrR family, at 185,830 to 186,432
GFF183
GFF184 - Alkyl hydroperoxide reductase protein C (EC 1.11.1.15), at 186,567 to 187,130
GFF184
Position (kb) 185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 184.246 kb on + strand, within GFF180 at 184.246 kb on + strand, within GFF180 at 184.254 kb on - strand, within GFF180 at 184.278 kb on + strand, within GFF180 at 184.341 kb on + strand, within GFF180 at 184.364 kb on - strand at 184.509 kb on - strand at 184.534 kb on + strand at 184.534 kb on - strand at 184.547 kb on - strand at 184.616 kb on + strand at 184.646 kb on - strand at 184.665 kb on - strand at 184.665 kb on - strand at 184.741 kb on + strand, within GFF181 at 184.755 kb on + strand, within GFF181 at 184.755 kb on + strand, within GFF181 at 184.791 kb on - strand, within GFF181 at 184.806 kb on + strand, within GFF181 at 184.854 kb on + strand, within GFF181 at 184.864 kb on + strand, within GFF181 at 184.866 kb on - strand, within GFF181 at 184.880 kb on + strand, within GFF181 at 184.883 kb on - strand, within GFF181 at 184.883 kb on - strand, within GFF181 at 184.885 kb on + strand, within GFF181 at 184.885 kb on + strand, within GFF181 at 184.885 kb on + strand, within GFF181 at 184.885 kb on + strand, within GFF181 at 184.888 kb on + strand, within GFF181 at 184.888 kb on - strand, within GFF181 at 184.890 kb on + strand at 184.890 kb on + strand at 184.893 kb on - strand at 184.910 kb on + strand at 184.910 kb on + strand at 184.910 kb on + strand at 184.910 kb on + strand at 184.910 kb on + strand at 184.910 kb on + strand at 184.910 kb on + strand at 184.910 kb on + strand at 184.910 kb on + strand at 184.910 kb on + strand at 184.910 kb on + strand at 184.915 kb on + strand at 184.915 kb on + strand at 184.915 kb on + strand at 184.918 kb on - strand at 184.918 kb on - strand at 184.918 kb on - strand at 184.923 kb on - strand at 184.923 kb on - strand at 184.928 kb on + strand at 184.928 kb on + strand at 184.928 kb on + strand at 184.936 kb on - strand at 184.958 kb on - strand at 184.973 kb on + strand at 184.981 kb on + strand at 184.985 kb on + strand at 184.999 kb on - strand at 185.015 kb on - strand at 185.030 kb on + strand at 185.030 kb on + strand at 185.030 kb on + strand at 185.030 kb on + strand at 185.035 kb on + strand at 185.035 kb on + strand at 185.035 kb on + strand at 185.038 kb on - strand at 185.038 kb on - strand at 185.038 kb on - strand at 185.040 kb on + strand at 185.040 kb on + strand at 185.040 kb on + strand at 185.040 kb on + strand at 185.040 kb on + strand at 185.040 kb on + strand at 185.040 kb on + strand at 185.040 kb on + strand at 185.043 kb on - strand at 185.043 kb on - strand at 185.043 kb on - strand at 185.048 kb on - strand at 185.048 kb on - strand at 185.048 kb on - strand at 185.048 kb on - strand at 185.048 kb on - strand at 185.048 kb on - strand at 185.048 kb on - strand at 185.048 kb on - strand at 185.069 kb on + strand at 185.077 kb on + strand at 185.077 kb on - strand at 185.116 kb on - strand at 185.118 kb on + strand at 185.120 kb on + strand at 185.128 kb on - strand at 185.128 kb on - strand at 185.135 kb on - strand at 185.135 kb on - strand at 185.135 kb on - strand at 185.153 kb on + strand at 185.153 kb on + strand at 185.153 kb on + strand at 185.161 kb on - strand at 185.161 kb on - strand at 185.161 kb on - strand at 185.161 kb on - strand at 185.161 kb on - strand at 185.197 kb on - strand at 185.209 kb on + strand at 185.214 kb on + strand at 185.219 kb on + strand at 185.219 kb on + strand at 185.222 kb on - strand at 185.227 kb on - strand, within GFF182 at 185.246 kb on - strand, within GFF182 at 185.258 kb on - strand, within GFF182 at 185.262 kb on + strand, within GFF182 at 185.277 kb on - strand, within GFF182 at 185.316 kb on + strand, within GFF182 at 185.330 kb on + strand, within GFF182 at 185.348 kb on + strand, within GFF182 at 185.360 kb on - strand, within GFF182 at 185.361 kb on + strand, within GFF182 at 185.361 kb on + strand, within GFF182 at 185.361 kb on + strand, within GFF182 at 185.379 kb on - strand, within GFF182 at 185.425 kb on - strand, within GFF182 at 185.452 kb on + strand, within GFF182 at 185.460 kb on + strand, within GFF182 at 185.462 kb on + strand, within GFF182 at 185.462 kb on + strand, within GFF182 at 185.470 kb on - strand, within GFF182 at 185.481 kb on - strand, within GFF182 at 185.483 kb on + strand, within GFF182 at 185.491 kb on - strand, within GFF182 at 185.491 kb on - strand, within GFF182 at 185.491 kb on - strand, within GFF182 at 185.491 kb on - strand, within GFF182 at 185.491 kb on - strand, within GFF182 at 185.507 kb on - strand, within GFF182 at 185.507 kb on - strand, within GFF182 at 185.509 kb on - strand, within GFF182 at 185.509 kb on - strand, within GFF182 at 185.523 kb on + strand, within GFF182 at 185.535 kb on - strand, within GFF182 at 185.535 kb on - strand, within GFF182 at 185.538 kb on + strand, within GFF182 at 185.546 kb on + strand, within GFF182 at 185.552 kb on - strand, within GFF182 at 185.554 kb on - strand, within GFF182 at 185.554 kb on - strand, within GFF182 at 185.572 kb on - strand, within GFF182 at 185.591 kb on + strand, within GFF182 at 185.613 kb on + strand at 185.629 kb on + strand at 185.631 kb on - strand at 185.650 kb on + strand at 185.658 kb on - strand at 185.745 kb on - strand at 185.750 kb on - strand at 185.750 kb on - strand at 185.750 kb on - strand at 185.819 kb on - strand at 185.824 kb on + strand at 185.824 kb on + strand at 185.824 kb on + strand at 185.832 kb on - strand at 185.832 kb on - strand at 185.832 kb on - strand at 185.850 kb on + strand at 185.913 kb on + strand, within GFF183 at 185.924 kb on + strand, within GFF183 at 185.927 kb on + strand, within GFF183 at 185.927 kb on + strand, within GFF183 at 185.927 kb on + strand, within GFF183 at 185.935 kb on - strand, within GFF183 at 185.935 kb on - strand, within GFF183 at 185.935 kb on - strand, within GFF183 at 185.945 kb on + strand, within GFF183 at 185.963 kb on + strand, within GFF183 at 185.973 kb on + strand, within GFF183 at 185.993 kb on + strand, within GFF183 at 186.001 kb on + strand, within GFF183 at 186.009 kb on - strand, within GFF183 at 186.014 kb on - strand, within GFF183 at 186.036 kb on + strand, within GFF183 at 186.036 kb on - strand, within GFF183 at 186.056 kb on - strand, within GFF183 at 186.063 kb on + strand, within GFF183 at 186.065 kb on + strand, within GFF183 at 186.136 kb on - strand, within GFF183 at 186.140 kb on + strand, within GFF183 at 186.148 kb on - strand, within GFF183 at 186.156 kb on - strand, within GFF183 at 186.159 kb on - strand, within GFF183 at 186.180 kb on + strand, within GFF183 at 186.219 kb on + strand, within GFF183 at 186.227 kb on - strand, within GFF183 at 186.232 kb on - strand, within GFF183 at 186.241 kb on + strand, within GFF183 at 186.243 kb on + strand, within GFF183 at 186.276 kb on + strand, within GFF183 at 186.276 kb on + strand, within GFF183 at 186.284 kb on - strand, within GFF183 at 186.284 kb on - strand, within GFF183 at 186.297 kb on + strand, within GFF183 at 186.297 kb on + strand, within GFF183 at 186.297 kb on + strand, within GFF183 at 186.300 kb on - strand, within GFF183 at 186.305 kb on - strand, within GFF183 at 186.324 kb on + strand, within GFF183 at 186.346 kb on - strand, within GFF183 at 186.358 kb on - strand, within GFF183 at 186.391 kb on - strand at 186.402 kb on + strand at 186.408 kb on + strand at 186.410 kb on + strand at 186.410 kb on + strand at 186.410 kb on + strand at 186.410 kb on + strand at 186.410 kb on + strand at 186.410 kb on + strand at 186.410 kb on - strand at 186.410 kb on - strand at 186.416 kb on - strand at 186.416 kb on - strand at 186.417 kb on - strand at 186.418 kb on - strand at 186.418 kb on - strand at 186.418 kb on - strand at 186.418 kb on - strand at 186.431 kb on - strand at 186.516 kb on + strand at 186.558 kb on + strand at 186.575 kb on + strand at 186.618 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 184,246 + GFF180 0.76 -0.7 184,246 + GFF180 0.76 +0.6 184,254 - GFF180 0.77 +0.3 184,278 + GFF180 0.80 +0.0 184,341 + GFF180 0.87 -1.4 184,364 - -1.0 184,509 - +0.3 184,534 + +0.1 184,534 - +0.6 184,547 - -0.1 184,616 + -0.4 184,646 - +0.1 184,665 - +0.2 184,665 - -0.1 184,741 + GFF181 0.26 -0.4 184,755 + GFF181 0.32 +1.2 184,755 + GFF181 0.32 -0.6 184,791 - GFF181 0.48 -0.5 184,806 + GFF181 0.54 +0.2 184,854 + GFF181 0.75 -0.6 184,864 + GFF181 0.79 +0.6 184,866 - GFF181 0.80 +0.0 184,880 + GFF181 0.86 +1.6 184,883 - GFF181 0.87 -0.5 184,883 - GFF181 0.87 +1.7 184,885 + GFF181 0.88 -2.3 184,885 + GFF181 0.88 -2.0 184,885 + GFF181 0.88 -0.7 184,885 + GFF181 0.88 -2.0 184,888 + GFF181 0.90 +0.9 184,888 - GFF181 0.90 -0.1 184,890 + -2.0 184,890 + +0.3 184,893 - +0.5 184,910 + +0.6 184,910 + -0.2 184,910 + -0.8 184,910 + +0.7 184,910 + +0.3 184,910 + +2.1 184,910 + -0.3 184,910 + -0.7 184,910 + +0.4 184,910 + -0.0 184,910 + -1.1 184,915 + +1.9 184,915 + -0.3 184,915 + -0.3 184,918 - -0.6 184,918 - -0.0 184,918 - +0.0 184,923 - -0.2 184,923 - +0.5 184,928 + +0.2 184,928 + +0.0 184,928 + +0.1 184,936 - -1.3 184,958 - +0.7 184,973 + -0.4 184,981 + +1.1 184,985 + +0.3 184,999 - +0.1 185,015 - +0.2 185,030 + +0.8 185,030 + +0.6 185,030 + +0.5 185,030 + +1.1 185,035 + -0.2 185,035 + -0.4 185,035 + +0.9 185,038 - -1.1 185,038 - -0.6 185,038 - -0.0 185,040 + -0.2 185,040 + +0.1 185,040 + +0.5 185,040 + +0.1 185,040 + +0.7 185,040 + +0.2 185,040 + -1.1 185,040 + -0.5 185,043 - +0.0 185,043 - +0.7 185,043 - -1.5 185,048 - +1.7 185,048 - +0.3 185,048 - +0.8 185,048 - -1.6 185,048 - +0.4 185,048 - -0.4 185,048 - -0.4 185,048 - -0.4 185,069 + +0.9 185,077 + -0.5 185,077 - -0.8 185,116 - -0.4 185,118 + +0.0 185,120 + +1.5 185,128 - -0.5 185,128 - +0.5 185,135 - +0.3 185,135 - -0.2 185,135 - +0.4 185,153 + -0.5 185,153 + +0.3 185,153 + +0.7 185,161 - -0.1 185,161 - -0.2 185,161 - -2.1 185,161 - -1.5 185,161 - +1.2 185,197 - +1.0 185,209 + -1.2 185,214 + -0.6 185,219 + -1.1 185,219 + +0.8 185,222 - +1.4 185,227 - GFF182 0.10 -0.3 185,246 - GFF182 0.14 -0.6 185,258 - GFF182 0.17 -2.1 185,262 + GFF182 0.18 +0.3 185,277 - GFF182 0.21 +0.6 185,316 + GFF182 0.29 +0.5 185,330 + GFF182 0.32 -1.0 185,348 + GFF182 0.35 -0.7 185,360 - GFF182 0.38 +1.1 185,361 + GFF182 0.38 +0.4 185,361 + GFF182 0.38 -0.1 185,361 + GFF182 0.38 -0.8 185,379 - GFF182 0.42 -0.1 185,425 - GFF182 0.51 -1.0 185,452 + GFF182 0.57 +0.8 185,460 + GFF182 0.59 +0.9 185,462 + GFF182 0.59 -0.8 185,462 + GFF182 0.59 +0.7 185,470 - GFF182 0.61 -0.9 185,481 - GFF182 0.63 -1.5 185,483 + GFF182 0.63 +0.1 185,491 - GFF182 0.65 -0.2 185,491 - GFF182 0.65 -1.8 185,491 - GFF182 0.65 -0.1 185,491 - GFF182 0.65 -0.5 185,491 - GFF182 0.65 +0.6 185,507 - GFF182 0.68 +1.2 185,507 - GFF182 0.68 +0.3 185,509 - GFF182 0.69 +0.7 185,509 - GFF182 0.69 -0.1 185,523 + GFF182 0.72 +0.8 185,535 - GFF182 0.74 -0.3 185,535 - GFF182 0.74 +0.1 185,538 + GFF182 0.75 +1.5 185,546 + GFF182 0.76 +1.5 185,552 - GFF182 0.78 -0.8 185,554 - GFF182 0.78 -0.4 185,554 - GFF182 0.78 -1.0 185,572 - GFF182 0.82 -2.0 185,591 + GFF182 0.86 +0.4 185,613 + -1.1 185,629 + +0.4 185,631 - +2.0 185,650 + +0.9 185,658 - -0.0 185,745 - -0.0 185,750 - -0.8 185,750 - +0.0 185,750 - +0.0 185,819 - -0.4 185,824 + -1.2 185,824 + +0.3 185,824 + -0.0 185,832 - -0.2 185,832 - +1.0 185,832 - -0.2 185,850 + +0.6 185,913 + GFF183 0.14 -0.1 185,924 + GFF183 0.16 -1.0 185,927 + GFF183 0.16 +1.2 185,927 + GFF183 0.16 +0.2 185,927 + GFF183 0.16 +0.3 185,935 - GFF183 0.17 +1.6 185,935 - GFF183 0.17 +1.1 185,935 - GFF183 0.17 -1.2 185,945 + GFF183 0.19 +0.9 185,963 + GFF183 0.22 +0.4 185,973 + GFF183 0.24 +0.3 185,993 + GFF183 0.27 +0.7 186,001 + GFF183 0.28 -1.2 186,009 - GFF183 0.30 -0.6 186,014 - GFF183 0.31 -0.1 186,036 + GFF183 0.34 -0.0 186,036 - GFF183 0.34 +1.0 186,056 - GFF183 0.37 -0.7 186,063 + GFF183 0.39 -2.2 186,065 + GFF183 0.39 -0.6 186,136 - GFF183 0.51 -2.7 186,140 + GFF183 0.51 -0.1 186,148 - GFF183 0.53 -0.5 186,156 - GFF183 0.54 -0.9 186,159 - GFF183 0.55 +0.6 186,180 + GFF183 0.58 -1.0 186,219 + GFF183 0.65 +0.2 186,227 - GFF183 0.66 +0.3 186,232 - GFF183 0.67 -0.9 186,241 + GFF183 0.68 +0.3 186,243 + GFF183 0.68 +0.4 186,276 + GFF183 0.74 -0.7 186,276 + GFF183 0.74 +0.1 186,284 - GFF183 0.75 -1.7 186,284 - GFF183 0.75 -1.5 186,297 + GFF183 0.77 -0.8 186,297 + GFF183 0.77 +0.1 186,297 + GFF183 0.77 -1.2 186,300 - GFF183 0.78 +1.6 186,305 - GFF183 0.79 -0.0 186,324 + GFF183 0.82 -1.6 186,346 - GFF183 0.86 -1.7 186,358 - GFF183 0.88 -1.5 186,391 - -0.9 186,402 + -0.9 186,408 + -0.9 186,410 + -1.4 186,410 + +0.5 186,410 + -0.3 186,410 + +0.1 186,410 + +0.4 186,410 + -0.7 186,410 - +0.6 186,410 - +0.1 186,416 - +0.2 186,416 - -1.3 186,417 - -0.4 186,418 - +0.4 186,418 - -0.8 186,418 - -0.8 186,418 - -2.8 186,431 - -0.0 186,516 + -0.3 186,558 + -1.2 186,575 + -0.9 186,618 + -0.9
Or see this region's nucleotide sequence