Strain Fitness in Sphingobium sp. HT1-2 around GFF1811

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,832,145	+				+1.1
1,832,146	+				+0.3
1,832,151	+				+0.2
1,832,159	-				+1.2
1,832,165	+				-0.1
1,832,183	-				-2.4
1,832,193	+				-1.8
1,832,193	+				+0.4
1,832,193	+				-1.3
1,832,196	-				+1.4
1,832,201	-				-0.5
1,832,202	-				-1.1
1,832,202	-				+0.2
1,832,210	+				-0.1
1,832,210	+				+0.2
1,832,218	-				-1.2
1,832,258	-				-0.2
1,832,282	-				+0.2
1,832,303	+				-1.0
1,832,306	-		GFF1810	0.10	-0.8
1,832,318	+		GFF1810	0.11	-1.4
1,832,319	-		GFF1810	0.12	-1.2
1,832,323	+		GFF1810	0.12	-0.1
1,832,331	-		GFF1810	0.13	+0.6
1,832,331	-		GFF1810	0.13	-0.1
1,832,331	-		GFF1810	0.13	+0.4
1,832,331	-		GFF1810	0.13	+0.3
1,832,334	+		GFF1810	0.13	-0.2
1,832,334	+		GFF1810	0.13	-0.2
1,832,334	+		GFF1810	0.13	-1.0
1,832,337	-		GFF1810	0.14	-1.5
1,832,339	-		GFF1810	0.14	-1.4
1,832,339	-		GFF1810	0.14	-0.8
1,832,342	-		GFF1810	0.14	+1.7
1,832,342	-		GFF1810	0.14	+0.9
1,832,346	-		GFF1810	0.15	-0.2
1,832,375	+		GFF1810	0.18	+0.0
1,832,419	+		GFF1810	0.23	-0.3
1,832,427	+		GFF1810	0.24	-0.7
1,832,427	+		GFF1810	0.24	-0.4
1,832,427	+		GFF1810	0.24	-1.3
1,832,435	-		GFF1810	0.25	+0.2
1,832,435	-		GFF1810	0.25	+2.0
1,832,435	-		GFF1810	0.25	-0.8
1,832,435	-		GFF1810	0.25	+0.0
1,832,450	-		GFF1810	0.27	-0.9
1,832,455	-		GFF1810	0.27	-0.7
1,832,455	-		GFF1810	0.27	-0.7
1,832,460	+		GFF1810	0.28	-0.4
1,832,479	-		GFF1810	0.30	+0.4
1,832,490	+		GFF1810	0.31	-2.1
1,832,495	+		GFF1810	0.32	-2.9
1,832,537	-		GFF1810	0.37	-1.0
1,832,537	-		GFF1810	0.37	-2.1
1,832,549	+		GFF1810	0.38	-1.1
1,832,554	+		GFF1810	0.39	+0.6
1,832,554	+		GFF1810	0.39	-0.9
1,832,554	+		GFF1810	0.39	+2.1
1,832,554	+		GFF1810	0.39	+0.2
1,832,562	-		GFF1810	0.40	+0.2
1,832,594	+		GFF1810	0.43	+1.7
1,832,601	+		GFF1810	0.44	-0.4
1,832,602	-		GFF1810	0.44	-1.1
1,832,626	+		GFF1810	0.47	-0.1
1,832,645	+		GFF1810	0.49	+0.4
1,832,645	+		GFF1810	0.49	-0.8
1,832,645	+		GFF1810	0.49	-0.2
1,832,653	-		GFF1810	0.50	-0.8
1,832,653	-		GFF1810	0.50	-1.3
1,832,654	-		GFF1810	0.50	+0.7
1,832,690	+		GFF1810	0.55	+0.4
1,832,691	+		GFF1810	0.55	-1.0
1,832,691	+		GFF1810	0.55	+0.8
1,832,691	+		GFF1810	0.55	+0.5
1,832,695	+		GFF1810	0.55	+0.2
1,832,699	-		GFF1810	0.56	-0.3
1,832,789	+		GFF1810	0.66	-0.3
1,832,789	+		GFF1810	0.66	-0.3
1,832,797	-		GFF1810	0.67	+1.1
1,832,797	-		GFF1810	0.67	-0.5
1,832,810	+		GFF1810	0.68	-0.9
1,832,818	-		GFF1810	0.69	-0.8
1,832,818	-		GFF1810	0.69	-1.3
1,832,818	-		GFF1810	0.69	-1.9
1,832,818	-		GFF1810	0.69	+0.3
1,832,818	-		GFF1810	0.69	-0.1
1,832,832	+		GFF1810	0.71	-0.2
1,832,856	-		GFF1810	0.74	+0.2
1,832,856	-		GFF1810	0.74	+0.6
1,832,897	+		GFF1810	0.78	+0.7
1,832,902	-		GFF1810	0.79	-0.3
1,832,903	-		GFF1810	0.79	+0.6
1,832,910	-		GFF1810	0.80	+0.1
1,832,932	+		GFF1810	0.83	+0.6
1,832,962	+		GFF1810	0.86	+0.4
1,832,962	+		GFF1810	0.86	+0.5
1,832,962	+		GFF1810	0.86	-0.8
1,832,962	+		GFF1810	0.86	-1.1
1,832,962	+		GFF1810	0.86	-0.4
1,832,968	+		GFF1810	0.87	-0.8
1,832,970	-		GFF1810	0.87	-0.1
1,832,970	-		GFF1810	0.87	+0.1
1,832,970	-		GFF1810	0.87	+1.7
1,832,975	-		GFF1810	0.88	-0.1
1,832,976	-		GFF1810	0.88	-0.4
1,832,976	-		GFF1810	0.88	-0.4
1,832,976	-		GFF1810	0.88	-1.2
1,833,003	+				+2.4
1,833,011	-				-1.5
1,833,035	+				+0.2
1,833,043	-				+0.2
1,833,054	-				-2.3
1,833,076	+				+1.5
1,833,084	+				+0.9
1,833,129	+				-0.3
1,833,130	+				+1.2
1,833,137	-				-0.2
1,833,171	-				-0.9
1,833,184	-				+0.1
1,833,188	-				+0.6
1,833,190	-				-0.8
1,833,201	-				+0.4
1,833,201	-				-0.8
1,833,231	-				+0.8
1,833,232	-				+0.6
1,833,241	-				+0.9
1,833,246	-				+0.4
1,833,271	+		GFF1811	0.10	-0.6
1,833,280	+		GFF1811	0.11	-0.8
1,833,285	+		GFF1811	0.11	+1.0
1,833,285	+		GFF1811	0.11	-0.1
1,833,285	+		GFF1811	0.11	-0.1
1,833,288	-		GFF1811	0.12	+0.2
1,833,290	+		GFF1811	0.12	-0.8
1,833,298	-		GFF1811	0.12	-0.6
1,833,310	-		GFF1811	0.13	-0.3
1,833,312	+		GFF1811	0.14	-1.6
1,833,312	+		GFF1811	0.14	-2.2
1,833,320	-		GFF1811	0.14	-0.6
1,833,347	-		GFF1811	0.16	-1.1
1,833,352	+		GFF1811	0.17	-0.5
1,833,352	+		GFF1811	0.17	-0.7
1,833,390	+		GFF1811	0.19	-1.9
1,833,390	+		GFF1811	0.19	+1.2
1,833,396	-		GFF1811	0.20	+0.4
1,833,409	+		GFF1811	0.21	-1.0
1,833,417	-		GFF1811	0.21	-0.4
1,833,417	-		GFF1811	0.21	-0.3
1,833,427	+		GFF1811	0.22	+0.7
1,833,427	+		GFF1811	0.22	+0.0
1,833,468	+		GFF1811	0.25	-1.5
1,833,468	+		GFF1811	0.25	+0.4
1,833,468	+		GFF1811	0.25	-0.3
1,833,468	+		GFF1811	0.25	-0.3
1,833,468	+		GFF1811	0.25	+0.9
1,833,468	+		GFF1811	0.25	-2.1
1,833,468	+		GFF1811	0.25	+0.1
1,833,468	+		GFF1811	0.25	-0.5
1,833,468	+		GFF1811	0.25	+0.1
1,833,468	+		GFF1811	0.25	+0.4
1,833,468	+		GFF1811	0.25	-1.1
1,833,468	+		GFF1811	0.25	+0.8
1,833,468	+		GFF1811	0.25	-0.3
1,833,468	+		GFF1811	0.25	-0.2
1,833,468	+		GFF1811	0.25	-1.3
1,833,468	+		GFF1811	0.25	-0.1
1,833,468	+		GFF1811	0.25	+0.8
1,833,468	+		GFF1811	0.25	-1.1
1,833,468	+		GFF1811	0.25	-1.0
1,833,468	+		GFF1811	0.25	-0.5
1,833,468	+		GFF1811	0.25	-2.3
1,833,473	+		GFF1811	0.26	+0.7
1,833,473	+		GFF1811	0.26	-2.4
1,833,476	-		GFF1811	0.26	-0.2
1,833,476	-		GFF1811	0.26	-1.8
1,833,476	-		GFF1811	0.26	-1.2
1,833,476	-		GFF1811	0.26	-1.0
1,833,483	+		GFF1811	0.26	+0.2
1,833,483	+		GFF1811	0.26	+0.0
1,833,483	+		GFF1811	0.26	+0.0
1,833,483	+		GFF1811	0.26	+0.5
1,833,491	-		GFF1811	0.27	-0.4
1,833,491	-		GFF1811	0.27	+0.5
1,833,491	-		GFF1811	0.27	-0.1
1,833,543	-		GFF1811	0.31	-0.4
1,833,601	-		GFF1811	0.35	-1.8
1,833,606	+		GFF1811	0.36	+0.5
1,833,606	-		GFF1811	0.36	-1.0
1,833,608	+		GFF1811	0.36	-0.5
1,833,608	+		GFF1811	0.36	+0.1
1,833,608	+		GFF1811	0.36	+0.4
1,833,608	+		GFF1811	0.36	-1.0
1,833,608	+		GFF1811	0.36	-0.1
1,833,609	-		GFF1811	0.36	-1.6
1,833,611	+		GFF1811	0.36	-1.9
1,833,611	-		GFF1811	0.36	-0.4
1,833,614	-		GFF1811	0.36	+0.7
1,833,616	-		GFF1811	0.36	-2.1
1,833,616	-		GFF1811	0.36	+1.7
1,833,619	-		GFF1811	0.37	-0.5
1,833,626	-		GFF1811	0.37	+0.0
1,833,631	+		GFF1811	0.37	-3.2
1,833,632	+		GFF1811	0.38	-1.4
1,833,640	+		GFF1811	0.38	-0.8
1,833,640	+		GFF1811	0.38	+1.5
1,833,640	+		GFF1811	0.38	-1.3
1,833,640	+		GFF1811	0.38	+0.1
1,833,640	+		GFF1811	0.38	+0.5
1,833,642	+		GFF1811	0.38	-1.1
1,833,648	-		GFF1811	0.39	+0.9
1,833,650	+		GFF1811	0.39	-0.5
1,833,650	+		GFF1811	0.39	-1.3
1,833,653	-		GFF1811	0.39	-1.0
1,833,657	+		GFF1811	0.39	-0.1
1,833,658	-		GFF1811	0.39	-0.5
1,833,658	-		GFF1811	0.39	-2.2
1,833,658	-		GFF1811	0.39	-0.3
1,833,658	-		GFF1811	0.39	-0.3
1,833,663	-		GFF1811	0.40	-1.3
1,833,690	+		GFF1811	0.42	-0.3
1,833,698	+		GFF1811	0.42	-1.3
1,833,698	+		GFF1811	0.42	+0.3
1,833,723	-		GFF1811	0.44	-0.8
1,833,740	-		GFF1811	0.46	+0.8
1,833,740	-		GFF1811	0.46	-1.1
1,833,744	-		GFF1811	0.46	+1.0
1,833,757	+		GFF1811	0.47	+0.0
1,833,757	+		GFF1811	0.47	-1.2
1,833,757	+		GFF1811	0.47	-0.3
1,833,765	-		GFF1811	0.48	+0.2
1,833,773	+		GFF1811	0.48	+0.3
1,833,781	+		GFF1811	0.49	-1.4
1,833,786	-		GFF1811	0.49	-1.0
1,833,796	-		GFF1811	0.50	-2.0
1,833,800	-		GFF1811	0.50	-1.0
1,833,830	+		GFF1811	0.52	+0.4
1,833,835	+		GFF1811	0.53	+0.6
1,833,840	+		GFF1811	0.53	-1.7
1,833,840	+		GFF1811	0.53	-0.3
1,833,843	-		GFF1811	0.53	-1.5
1,833,843	-		GFF1811	0.53	+0.1
1,833,894	+		GFF1811	0.57	+0.9
1,833,899	-		GFF1811	0.58	-0.1
1,833,907	-		GFF1811	0.58	-0.6
1,833,958	-		GFF1811	0.62	+2.2
1,833,984	-		GFF1811	0.64	+0.8
1,833,996	+		GFF1811	0.65	-0.3
1,834,004	+		GFF1811	0.65	-1.2
1,834,012	+		GFF1811	0.66	+0.0
1,834,012	+		GFF1811	0.66	-0.3
1,834,012	+		GFF1811	0.66	+0.4
1,834,012	+		GFF1811	0.66	-1.8
1,834,012	+		GFF1811	0.66	-1.0
1,834,012	+		GFF1811	0.66	+0.5
1,834,015	-		GFF1811	0.66	-2.7
1,834,015	-		GFF1811	0.66	+0.3
1,834,020	-		GFF1811	0.67	-0.6
1,834,020	-		GFF1811	0.67	+0.0
1,834,020	-		GFF1811	0.67	+1.7
1,834,020	-		GFF1811	0.67	-0.5
1,834,024	+		GFF1811	0.67	-1.3
1,834,024	+		GFF1811	0.67	-0.0
1,834,029	+		GFF1811	0.67	-1.3
1,834,029	+		GFF1811	0.67	+0.3
1,834,029	+		GFF1811	0.67	-1.4
1,834,029	+		GFF1811	0.67	-0.4
1,834,029	+		GFF1811	0.67	+1.1
1,834,029	+		GFF1811	0.67	-0.7
1,834,030	-		GFF1811	0.67	-0.2
1,834,030	-		GFF1811	0.67	+0.5
1,834,037	-		GFF1811	0.68	+0.1
1,834,037	-		GFF1811	0.68	-1.4
1,834,037	-		GFF1811	0.68	-0.7
1,834,037	-		GFF1811	0.68	-0.6
1,834,037	-		GFF1811	0.68	-1.8
1,834,131	+		GFF1811	0.75	-0.3
1,834,190	+		GFF1811	0.79	-0.6
1,834,207	+		GFF1811	0.81	-0.6
1,834,232	-		GFF1811	0.83	-0.5
1,834,239	+		GFF1811	0.83	-0.0
1,834,239	+		GFF1811	0.83	-1.3
1,834,240	+		GFF1811	0.83	+0.8
1,834,240	+		GFF1811	0.83	+0.3
1,834,240	+		GFF1811	0.83	-0.1
1,834,240	+		GFF1811	0.83	-1.6
1,834,247	-		GFF1811	0.84	+1.3
1,834,247	-		GFF1811	0.84	-0.2
1,834,247	-		GFF1811	0.84	-0.1
1,834,247	-		GFF1811	0.84	-1.0
1,834,247	-		GFF1811	0.84	-0.0
1,834,247	-		GFF1811	0.84	+0.3
1,834,248	-		GFF1811	0.84	+1.5
1,834,248	-		GFF1811	0.84	-2.4
1,834,248	-		GFF1811	0.84	-0.4
1,834,248	-		GFF1811	0.84	+0.9
1,834,249	+		GFF1811	0.84	-0.0
1,834,278	+		GFF1811	0.86	-0.6
1,834,301	-		GFF1811	0.88	-0.7
1,834,314	-		GFF1811	0.89	-1.5
1,834,353	+				-0.4
1,834,358	+				-1.2
1,834,360	+				-2.3
1,834,366	-				-0.3
1,834,366	-				-2.7
1,834,379	+				+1.1
1,834,379	+				-0.2
1,834,379	+				-0.3
1,834,379	+				-1.2
1,834,379	+				+0.8
1,834,387	-				+0.5
1,834,387	-				+0.1
1,834,400	+				-0.5
1,834,430	+				+0.2
1,834,437	+				-0.5
1,834,437	+				-1.8
1,834,438	-				-1.6
1,834,438	-				-0.2
1,834,438	-				-2.0
1,834,445	-				-0.5
1,834,451	-				-1.4
1,834,452	-				-0.2
1,834,459	+				-0.4
1,834,459	-				+0.1
1,834,492	-				+0.3
1,834,506	-				-2.7
1,834,506	-				+0.6
1,834,551	-				-1.7
1,834,558	-				+0.3
1,834,558	-				-2.4
1,834,560	+				-2.0
1,834,565	-				-0.1
1,834,568	-				+0.2