Strain Fitness in Sphingobium sp. HT1-2 around GFF1788

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,809,545	+				-0.5
1,809,560	-				-0.8
1,809,580	+				-0.1
1,809,580	+				-0.0
1,809,580	+				-0.7
1,809,580	+				-0.3
1,809,580	+				-0.4
1,809,588	-				-1.1
1,809,588	-				-0.1
1,809,588	-				-0.9
1,809,588	-				+0.8
1,809,588	-				-1.0
1,809,588	-				-0.9
1,809,592	+				-0.0
1,809,592	+				-0.5
1,809,592	+				-0.6
1,809,592	+				-0.7
1,809,592	+				+0.0
1,809,592	+				-0.4
1,809,592	+				-1.8
1,809,600	+				-0.5
1,809,600	-				-2.0
1,809,600	-				+0.8
1,809,600	-				+0.5
1,809,600	-				+0.7
1,809,610	-				-1.3
1,809,631	+				+0.0
1,809,637	-				-2.1
1,809,648	-				+1.1
1,809,649	+				-0.6
1,809,657	-				-1.8
1,809,662	-				-1.2
1,809,672	-				+1.5
1,809,692	-				-0.9
1,809,694	+				-0.6
1,809,696	+				-0.5
1,809,696	+				+0.5
1,809,696	+				-1.1
1,809,704	+				-0.5
1,809,712	-				-0.6
1,809,722	+				-0.6
1,809,734	+				+1.9
1,809,734	+				+0.9
1,809,737	-				-0.8
1,809,739	+				-0.6
1,809,739	+				-0.3
1,809,739	+				-1.5
1,809,739	+				-0.3
1,809,739	+				-1.1
1,809,739	+				-1.4
1,809,739	+				+0.7
1,809,742	-				+0.7
1,809,746	+				-1.0
1,809,747	-				-1.7
1,809,747	-				-0.9
1,809,747	-				-0.6
1,809,758	+				+0.4
1,809,761	-				-0.5
1,809,766	-				-0.1
1,809,768	+				-0.4
1,809,768	+				-1.0
1,809,784	-				-1.0
1,809,831	+		GFF1787	0.12	-0.4
1,809,831	+		GFF1787	0.12	+0.6
1,809,834	-		GFF1787	0.12	-0.8
1,809,834	-		GFF1787	0.12	+0.1
1,809,834	-		GFF1787	0.12	+0.8
1,809,858	+		GFF1787	0.16	+0.3
1,809,858	+		GFF1787	0.16	+0.1
1,809,865	+		GFF1787	0.17	+1.6
1,809,865	+		GFF1787	0.17	+0.7
1,809,866	-		GFF1787	0.17	+0.2
1,809,870	+		GFF1787	0.17	-1.8
1,809,870	+		GFF1787	0.17	-0.8
1,809,870	+		GFF1787	0.17	-0.3
1,809,875	+		GFF1787	0.18	-0.3
1,809,875	+		GFF1787	0.18	-1.8
1,809,875	+		GFF1787	0.18	+0.3
1,809,878	-		GFF1787	0.18	+0.3
1,809,878	-		GFF1787	0.18	-0.1
1,809,883	-		GFF1787	0.19	+0.2
1,809,883	-		GFF1787	0.19	-1.2
1,809,898	+		GFF1787	0.21	-0.6
1,809,898	+		GFF1787	0.21	-1.1
1,809,899	+		GFF1787	0.21	-2.0
1,809,907	-		GFF1787	0.22	-1.4
1,809,907	-		GFF1787	0.22	-0.8
1,809,907	-		GFF1787	0.22	-0.2
1,809,921	+		GFF1787	0.24	+0.2
1,809,921	+		GFF1787	0.24	-0.0
1,809,922	+		GFF1787	0.24	-1.7
1,809,928	+		GFF1787	0.25	+0.1
1,809,929	-		GFF1787	0.25	+0.6
1,809,929	-		GFF1787	0.25	+0.7
1,809,929	-		GFF1787	0.25	-1.4
1,809,929	-		GFF1787	0.25	-0.3
1,809,930	-		GFF1787	0.26	+0.7
1,809,955	+		GFF1787	0.29	+0.5
1,809,961	+		GFF1787	0.30	-0.7
1,809,963	-		GFF1787	0.30	-0.2
1,809,975	+		GFF1787	0.32	+1.9
1,810,005	+		GFF1787	0.36	-0.8
1,810,005	-		GFF1787	0.36	-0.3
1,810,006	+		GFF1787	0.36	-1.8
1,810,013	-		GFF1787	0.37	+0.9
1,810,013	-		GFF1787	0.37	-1.7
1,810,060	+		GFF1787	0.44	-1.4
1,810,068	-		GFF1787	0.45	-0.1
1,810,069	+		GFF1787	0.45	+1.2
1,810,077	-		GFF1787	0.46	-3.4
1,810,090	+		GFF1787	0.48	-0.0
1,810,109	+		GFF1787	0.50	+0.4
1,810,115	+		GFF1787	0.51	-1.3
1,810,115	+		GFF1787	0.51	+0.7
1,810,120	+		GFF1787	0.52	-0.6
1,810,139	-		GFF1787	0.54	-0.4
1,810,144	+		GFF1787	0.55	-0.2
1,810,149	+		GFF1787	0.56	+0.3
1,810,162	-		GFF1787	0.58	-1.6
1,810,171	+		GFF1787	0.59	-0.0
1,810,171	+		GFF1787	0.59	-1.1
1,810,171	+		GFF1787	0.59	-1.4
1,810,179	-		GFF1787	0.60	+0.2
1,810,179	-		GFF1787	0.60	-1.9
1,810,179	-		GFF1787	0.60	-0.1
1,810,179	-		GFF1787	0.60	-1.4
1,810,179	-		GFF1787	0.60	-1.6
1,810,179	-		GFF1787	0.60	+0.0
1,810,179	-		GFF1787	0.60	+1.1
1,810,179	-		GFF1787	0.60	-1.0
1,810,179	-		GFF1787	0.60	+0.7
1,810,179	-		GFF1787	0.60	-0.1
1,810,179	-		GFF1787	0.60	-0.5
1,810,179	-		GFF1787	0.60	-1.0
1,810,179	-		GFF1787	0.60	-0.6
1,810,179	-		GFF1787	0.60	-1.4
1,810,181	+		GFF1787	0.60	-0.4
1,810,208	-		GFF1787	0.64	-1.0
1,810,216	-		GFF1787	0.65	-1.1
1,810,243	-		GFF1787	0.69	-0.0
1,810,243	-		GFF1787	0.69	-0.4
1,810,243	-		GFF1787	0.69	+0.7
1,810,255	+		GFF1787	0.71	-0.3
1,810,263	-		GFF1787	0.72	+1.0
1,810,279	-		GFF1787	0.74	-0.3
1,810,310	-		GFF1787	0.78	+1.2
1,810,310	-		GFF1787	0.78	+1.0
1,810,310	-		GFF1787	0.78	+1.1
1,810,359	+		GFF1787	0.85	+0.3
1,810,369	+		GFF1787	0.86	-1.4
1,810,379	+		GFF1787	0.88	-0.8
1,810,384	+		GFF1787	0.88	-0.1
1,810,387	-		GFF1787	0.89	-2.5
1,810,433	+				-1.2
1,810,433	+				+0.4
1,810,433	+				+0.3
1,810,438	+				-1.4
1,810,441	-				-0.2
1,810,441	-				+2.1
1,810,441	-				-2.6
1,810,441	-				+0.4
1,810,446	-				-1.2
1,810,461	+				+0.8
1,810,466	+				-2.5
1,810,503	+				-0.2
1,810,511	-				-0.8
1,810,520	+				-0.5
1,810,522	-				+0.5
1,810,526	+				-0.2
1,810,548	+				+0.2
1,810,602	-		GFF1788	0.22	-0.1
1,810,618	+		GFF1788	0.27	-0.4
1,810,618	+		GFF1788	0.27	+0.3
1,810,618	+		GFF1788	0.27	-0.1
1,810,618	+		GFF1788	0.27	+1.1
1,810,618	+		GFF1788	0.27	-1.2
1,810,618	+		GFF1788	0.27	+1.3
1,810,626	-		GFF1788	0.29	-1.1
1,810,626	-		GFF1788	0.29	+1.4
1,810,626	-		GFF1788	0.29	+0.5
1,810,626	-		GFF1788	0.29	+0.3
1,810,626	-		GFF1788	0.29	+0.5
1,810,626	-		GFF1788	0.29	-1.1
1,810,626	-		GFF1788	0.29	+0.0
1,810,626	-		GFF1788	0.29	-2.6
1,810,632	+		GFF1788	0.31	-1.2
1,810,674	+		GFF1788	0.43	-1.0
1,810,709	+		GFF1788	0.53	-1.2
1,810,709	+		GFF1788	0.53	-0.1
1,810,709	+		GFF1788	0.53	+0.8
1,810,731	+		GFF1788	0.60	-0.0
1,810,762	-		GFF1788	0.69	-0.5
1,810,767	-		GFF1788	0.71	-0.5
1,810,767	-		GFF1788	0.71	+1.1
1,810,787	+		GFF1788	0.76	+0.1
1,810,789	+		GFF1788	0.77	+0.3
1,810,789	+		GFF1788	0.77	+0.7
1,810,789	+		GFF1788	0.77	+0.1
1,810,797	-		GFF1788	0.79	-0.0
1,810,802	+		GFF1788	0.81	-1.0
1,810,822	-		GFF1788	0.87	-0.7
1,810,824	+		GFF1788	0.87	-0.4
1,810,857	-				+1.3
1,810,859	+				+1.2
1,810,859	+				-1.1
1,810,869	-				-0.2
1,810,875	+				+0.2
1,810,875	+				+0.8
1,810,875	+				-0.7
1,810,875	+				+0.2
1,810,875	+				+0.1
1,810,875	+				-1.0
1,810,875	+				+0.6
1,810,875	+				+0.1
1,810,875	+				-0.4
1,810,875	+				-0.9
1,810,875	+				-0.9
1,810,875	+				-2.1
1,810,875	+				-0.6
1,810,875	+				-0.3
1,810,883	-				-0.9
1,810,883	-				-0.6
1,810,883	-				+0.4
1,810,883	-				-0.6
1,810,883	-				+0.2
1,810,883	-				-0.8
1,810,883	-				+2.1
1,810,883	-				-0.9
1,810,883	-				-0.5
1,810,883	-				-0.4
1,810,885	-				+1.0
1,810,893	-				+0.2
1,810,893	-				+0.9
1,810,900	+				+1.0
1,810,900	+				-1.2
1,810,940	+				+0.2
1,810,941	-				+0.8
1,810,941	-				-1.6
1,810,941	-				-0.3
1,810,946	+				-0.9
1,810,948	-				-1.9
1,810,948	-				-2.4
1,810,952	+				-0.7
1,810,960	-				-0.4
1,810,979	+				-0.7
1,810,998	+				+0.3
1,811,080	+		GFF1789	0.12	-0.9
1,811,097	+		GFF1789	0.15	-0.3
1,811,105	-		GFF1789	0.16	-1.2
1,811,110	-		GFF1789	0.17	-1.2
1,811,125	+		GFF1789	0.20	+0.3
1,811,137	+		GFF1789	0.21	-0.4
1,811,138	-		GFF1789	0.22	+0.7
1,811,145	-		GFF1789	0.23	-0.2
1,811,164	-		GFF1789	0.26	-0.8
1,811,164	-		GFF1789	0.26	+0.7
1,811,164	-		GFF1789	0.26	+0.2
1,811,187	-		GFF1789	0.29	-0.4
1,811,197	-		GFF1789	0.31	+0.2
1,811,197	-		GFF1789	0.31	-0.1
1,811,205	+		GFF1789	0.32	+1.1
1,811,213	-		GFF1789	0.33	-0.6
1,811,213	-		GFF1789	0.33	-1.4
1,811,222	+		GFF1789	0.35	-0.5
1,811,227	+		GFF1789	0.36	-0.7
1,811,227	+		GFF1789	0.36	-1.2
1,811,230	-		GFF1789	0.36	-1.8
1,811,230	-		GFF1789	0.36	-0.4
1,811,235	-		GFF1789	0.37	-1.2
1,811,240	-		GFF1789	0.38	-1.8
1,811,240	-		GFF1789	0.38	+0.2
1,811,250	+		GFF1789	0.39	-1.5
1,811,276	+		GFF1789	0.43	-2.0
1,811,276	+		GFF1789	0.43	+1.5
1,811,284	+		GFF1789	0.45	-0.1
1,811,284	+		GFF1789	0.45	-0.4
1,811,284	-		GFF1789	0.45	-0.4
1,811,292	-		GFF1789	0.46	-0.6
1,811,292	-		GFF1789	0.46	-1.3
1,811,292	-		GFF1789	0.46	-0.6
1,811,292	-		GFF1789	0.46	-0.6
1,811,292	-		GFF1789	0.46	-1.1
1,811,292	-		GFF1789	0.46	-1.1
1,811,294	-		GFF1789	0.46	-0.0
1,811,294	-		GFF1789	0.46	-1.1
1,811,341	+		GFF1789	0.54	-0.8
1,811,341	+		GFF1789	0.54	-0.3
1,811,341	+		GFF1789	0.54	-0.3
1,811,341	+		GFF1789	0.54	-1.0
1,811,341	+		GFF1789	0.54	+0.9
1,811,341	+		GFF1789	0.54	-0.0
1,811,349	-		GFF1789	0.55	-0.5
1,811,349	-		GFF1789	0.55	-0.1
1,811,349	-		GFF1789	0.55	+1.5
1,811,349	-		GFF1789	0.55	+0.9
1,811,349	-		GFF1789	0.55	+0.5
1,811,349	-		GFF1789	0.55	-1.0
1,811,349	-		GFF1789	0.55	+0.1
1,811,351	+		GFF1789	0.55	+0.2
1,811,362	+		GFF1789	0.57	-0.4
1,811,370	-		GFF1789	0.58	-0.5
1,811,384	+		GFF1789	0.61	+0.8
1,811,388	-		GFF1789	0.61	-0.8
1,811,388	-		GFF1789	0.61	-0.7
1,811,411	-		GFF1789	0.65	-1.2
1,811,424	+		GFF1789	0.67	+1.1
1,811,438	+		GFF1789	0.69	-0.9
1,811,503	-		GFF1789	0.79	-0.0
1,811,504	+		GFF1789	0.79	-1.4
1,811,504	+		GFF1789	0.79	-1.4
1,811,508	-		GFF1789	0.80	-0.6
1,811,548	-		GFF1789	0.86	-0.5
1,811,557	+		GFF1789	0.88	+0.8
1,811,557	+		GFF1789	0.88	-1.7
1,811,557	+		GFF1789	0.88	-0.1
1,811,557	+		GFF1789	0.88	-0.0
1,811,560	-		GFF1789	0.88	-0.0
1,811,560	-		GFF1789	0.88	+0.2
1,811,565	-		GFF1789	0.89	+0.3
1,811,565	-		GFF1789	0.89	+0.6
1,811,565	-		GFF1789	0.89	-1.3
1,811,565	-		GFF1789	0.89	-1.3
1,811,565	-		GFF1789	0.89	-0.5
1,811,577	-				+0.5
1,811,577	-				+0.6
1,811,616	-				-1.2
1,811,622	+				-0.1
1,811,662	+				+0.6
1,811,662	+				+0.3
1,811,662	+				-1.2
1,811,662	+				-1.2
1,811,670	-				-1.0
1,811,675	-				-1.9
1,811,693	-				+0.5
1,811,709	+				-1.5
1,811,717	-				-2.3
1,811,749	+				+0.8
1,811,750	+				+1.7
1,811,753	-				-1.4
1,811,758	-				-0.0
1,811,775	+				+0.3
1,811,783	-				+0.6
1,811,791	-				-0.3
1,811,793	-				+0.9
1,811,821	-				-2.6
1,811,826	-				-0.3
1,811,826	-				-0.1
1,811,832	+				+0.1
1,811,850	-				+0.3