Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF174 and GFF175 are separated by 113 nucleotides GFF175 and GFF176 are separated by 5 nucleotides GFF176 and GFF177 are separated by 179 nucleotides
GFF174 - Nucleoside diphosphate kinase (EC 2.7.4.6), at 176,281 to 176,703
GFF174
GFF175 - DNA polymerase III chi subunit (EC 2.7.7.7), at 176,817 to 177,254
GFF175
GFF176 - Cytosol aminopeptidase PepA (EC 3.4.11.1), at 177,260 to 178,705
GFF176
GFF177 - LPS-assembly protein LptD @ Organic solvent tolerance protein precursor, at 178,885 to 181,149
GFF177
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2 at 176.286 kb on - strand at 176.745 kb on + strand at 176.753 kb on - strand at 176.776 kb on + strand at 176.781 kb on + strand at 176.781 kb on + strand at 176.781 kb on + strand at 176.784 kb on - strand at 176.786 kb on - strand at 176.786 kb on - strand at 176.786 kb on - strand at 176.789 kb on - strand at 176.796 kb on - strand at 176.799 kb on - strand at 176.832 kb on - strand at 176.841 kb on - strand at 176.859 kb on - strand at 176.865 kb on + strand, within GFF175 at 177.907 kb on - strand, within GFF176 at 178.721 kb on - strand at 178.772 kb on + strand at 178.772 kb on + strand at 178.772 kb on + strand at 178.772 kb on + strand at 178.774 kb on + strand at 178.780 kb on - strand at 178.780 kb on - strand at 178.780 kb on - strand at 178.780 kb on - strand at 178.780 kb on - strand at 178.780 kb on - strand at 178.790 kb on + strand at 178.798 kb on - strand at 178.798 kb on - strand at 178.809 kb on - strand at 178.853 kb on + strand at 178.853 kb on + strand at 178.853 kb on + strand at 178.853 kb on + strand at 178.853 kb on + strand at 178.853 kb on + strand at 178.853 kb on + strand at 178.853 kb on + strand at 178.853 kb on + strand at 178.853 kb on + strand at 178.853 kb on + strand at 178.853 kb on + strand at 178.853 kb on + strand at 178.861 kb on - strand at 178.861 kb on - strand at 178.861 kb on - strand at 178.861 kb on - strand at 178.861 kb on - strand at 178.861 kb on - strand at 178.861 kb on - strand at 178.861 kb on - strand at 178.861 kb on - strand at 178.874 kb on + strand at 178.876 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 176,286 - +1.2 176,745 + -2.1 176,753 - -2.1 176,776 + -0.7 176,781 + +0.5 176,781 + -0.8 176,781 + -0.6 176,784 - -0.6 176,786 - +0.6 176,786 - +0.1 176,786 - -1.0 176,789 - -1.7 176,796 - +0.1 176,799 - -1.5 176,832 - +0.1 176,841 - -1.2 176,859 - -0.6 176,865 + GFF175 0.11 +0.7 177,907 - GFF176 0.45 -1.5 178,721 - +0.1 178,772 + +0.1 178,772 + +0.0 178,772 + -0.6 178,772 + -0.5 178,774 + +1.5 178,780 - +2.0 178,780 - -1.8 178,780 - -1.1 178,780 - +0.2 178,780 - -0.0 178,780 - -0.1 178,790 + +0.1 178,798 - -1.3 178,798 - +0.6 178,809 - +0.1 178,853 + -1.1 178,853 + +0.0 178,853 + -1.1 178,853 + +0.1 178,853 + +0.0 178,853 + -0.0 178,853 + -2.3 178,853 + +1.2 178,853 + -1.5 178,853 + +0.2 178,853 + -1.0 178,853 + -0.7 178,853 + +0.2 178,861 - -1.9 178,861 - -0.6 178,861 - -0.3 178,861 - -0.5 178,861 - -0.5 178,861 - -0.7 178,861 - +0.7 178,861 - -2.1 178,861 - -0.7 178,874 + +1.2 178,876 + +0.4
Or see this region's nucleotide sequence