Strain Fitness in Sphingobium sp. HT1-2 around GFF1752

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,778,460	-		GFF1751	0.10	-0.5
1,778,462	+		GFF1751	0.11	-1.4
1,778,475	-		GFF1751	0.12	-0.5
1,778,475	-		GFF1751	0.12	-0.2
1,778,475	-		GFF1751	0.12	-1.1
1,778,485	-		GFF1751	0.13	-0.1
1,778,490	-		GFF1751	0.14	-0.8
1,778,525	+		GFF1751	0.17	+1.2
1,778,548	+		GFF1751	0.20	-1.2
1,778,556	-		GFF1751	0.21	+0.2
1,778,581	+		GFF1751	0.23	-0.7
1,778,589	-		GFF1751	0.24	-1.3
1,778,595	+		GFF1751	0.25	-1.8
1,778,628	+		GFF1751	0.28	+1.0
1,778,628	+		GFF1751	0.28	-0.4
1,778,628	+		GFF1751	0.28	-1.0
1,778,628	+		GFF1751	0.28	-0.3
1,778,628	+		GFF1751	0.28	+0.9
1,778,628	+		GFF1751	0.28	+0.2
1,778,636	-		GFF1751	0.29	+0.4
1,778,636	-		GFF1751	0.29	-0.7
1,778,636	-		GFF1751	0.29	+0.7
1,778,636	-		GFF1751	0.29	+0.1
1,778,641	+		GFF1751	0.30	-0.1
1,778,649	-		GFF1751	0.31	-0.1
1,778,665	+		GFF1751	0.32	-0.2
1,778,672	-		GFF1751	0.33	-2.0
1,778,714	-		GFF1751	0.38	+1.0
1,778,716	+		GFF1751	0.38	-0.6
1,778,716	+		GFF1751	0.38	-0.1
1,778,724	-		GFF1751	0.39	+0.3
1,778,724	-		GFF1751	0.39	-0.5
1,778,724	-		GFF1751	0.39	+0.3
1,778,736	-		GFF1751	0.40	+0.0
1,778,743	+		GFF1751	0.41	-0.3
1,778,743	+		GFF1751	0.41	-0.9
1,778,751	-		GFF1751	0.42	-0.4
1,778,751	-		GFF1751	0.42	-0.3
1,778,751	-		GFF1751	0.42	-0.2
1,778,751	-		GFF1751	0.42	+0.1
1,778,751	-		GFF1751	0.42	-0.0
1,778,772	+		GFF1751	0.44	+0.1
1,778,775	-		GFF1751	0.44	+0.4
1,778,780	-		GFF1751	0.45	+0.1
1,778,780	-		GFF1751	0.45	+0.1
1,778,804	-		GFF1751	0.47	-1.2
1,778,829	-		GFF1751	0.50	-1.8
1,778,830	+		GFF1751	0.50	+0.5
1,778,830	+		GFF1751	0.50	+0.7
1,778,877	+		GFF1751	0.55	-1.3
1,778,906	+		GFF1751	0.58	+0.5
1,778,906	+		GFF1751	0.58	+0.5
1,778,906	+		GFF1751	0.58	-0.2
1,778,930	+		GFF1751	0.61	+0.5
1,778,938	-		GFF1751	0.62	-1.6
1,778,951	+		GFF1751	0.63	-1.8
1,778,959	-		GFF1751	0.64	-1.0
1,778,960	-		GFF1751	0.64	+1.0
1,778,960	-		GFF1751	0.64	+0.1
1,778,990	+		GFF1751	0.68	-0.2
1,778,998	-		GFF1751	0.68	-1.0
1,779,005	+		GFF1751	0.69	+0.3
1,779,009	+		GFF1751	0.70	-1.1
1,779,009	+		GFF1751	0.70	+0.8
1,779,009	+		GFF1751	0.70	-0.7
1,779,017	-		GFF1751	0.70	+1.0
1,779,017	-		GFF1751	0.70	+0.7
1,779,017	-		GFF1751	0.70	+0.8
1,779,035	+		GFF1751	0.72	-1.8
1,779,035	+		GFF1751	0.72	+0.3
1,779,035	+		GFF1751	0.72	-0.1
1,779,037	-		GFF1751	0.73	+0.4
1,779,037	-		GFF1751	0.73	-1.9
1,779,043	-		GFF1751	0.73	-0.8
1,779,068	+		GFF1751	0.76	-0.8
1,779,076	-		GFF1751	0.77	+0.6
1,779,097	+		GFF1751	0.79	-0.3
1,779,097	+		GFF1751	0.79	-1.0
1,779,099	-		GFF1751	0.79	+0.6
1,779,102	+		GFF1751	0.80	-0.0
1,779,105	-		GFF1751	0.80	-0.8
1,779,105	-		GFF1751	0.80	+0.1
1,779,107	+		GFF1751	0.80	+0.4
1,779,110	-		GFF1751	0.80	-1.3
1,779,115	-		GFF1751	0.81	-0.4
1,779,115	-		GFF1751	0.81	-0.3
1,779,115	-		GFF1751	0.81	-1.0
1,779,117	+		GFF1751	0.81	+0.5
1,779,117	+		GFF1751	0.81	+0.1
1,779,117	+		GFF1751	0.81	-0.4
1,779,117	-		GFF1751	0.81	-1.0
1,779,122	+		GFF1751	0.82	-0.5
1,779,122	+		GFF1751	0.82	-1.1
1,779,125	-		GFF1751	0.82	+0.5
1,779,141	+		GFF1751	0.84	+0.3
1,779,149	-		GFF1751	0.85	-1.0
1,779,160	-		GFF1751	0.86	+0.6
1,779,160	-		GFF1751	0.86	+0.9
1,779,160	-		GFF1751	0.86	-0.3
1,779,184	+		GFF1751	0.88	-1.3
1,779,184	+		GFF1751	0.88	-2.1
1,779,186	+		GFF1751	0.89	-1.7
1,779,186	+		GFF1751	0.89	+0.3
1,779,186	+		GFF1751	0.89	+0.7
1,779,186	+		GFF1751	0.89	-1.8
1,779,186	+		GFF1751	0.89	+0.6
1,779,192	-		GFF1751	0.89	+0.0
1,779,194	-		GFF1751	0.90	+0.5
1,779,194	-		GFF1751	0.90	-0.1
1,779,194	-		GFF1751	0.90	-0.8
1,779,194	-		GFF1751	0.90	-0.2
1,779,194	-		GFF1751	0.90	+0.0
1,779,194	-		GFF1751	0.90	-0.7
1,779,202	-				+0.4
1,779,297	-				-0.5
1,779,301	-				+1.0
1,779,303	+				+0.4
1,779,303	+				-1.3
1,779,303	+				-1.1
1,779,303	+				+0.9
1,779,308	+				+0.9
1,779,311	-				+0.3
1,779,311	-				+0.1
1,779,311	-				-1.9
1,779,318	+				+0.8
1,779,321	-				-1.0
1,779,338	+				-1.6
1,779,338	+				-0.2
1,779,347	-				-0.2
1,779,440	+				-0.2
1,779,446	+				+0.5
1,779,451	+				-1.6
1,779,451	+				-1.5
1,779,454	-				-0.2
1,779,456	+				+0.0
1,779,458	-				+0.6
1,779,459	-				-1.6
1,779,462	-				-0.9
1,779,472	+				+0.7
1,779,472	+				-1.0
1,779,485	+				-1.4
1,779,493	-				-2.0
1,779,493	-				+1.1
1,779,493	-				+0.3
1,779,493	-				-1.6
1,779,494	-				-0.8
1,779,512	+				+0.5
1,779,520	-				-1.2
1,779,561	-				-0.6
1,779,561	-				-0.1
1,779,567	+				-1.5
1,779,572	+				-0.5
1,779,573	+				-1.4
1,779,574	-				-1.5
1,779,580	-				-2.0
1,779,580	-				+0.9
1,779,580	-				-0.0
1,779,580	-				+0.7
1,779,585	+				+0.2
1,779,590	+				+0.5
1,779,605	+				-0.4
1,779,622	+		GFF1752	0.10	-0.9
1,779,624	+		GFF1752	0.10	-2.8
1,779,629	+		GFF1752	0.10	+0.2
1,779,629	+		GFF1752	0.10	+0.1
1,779,632	-		GFF1752	0.11	-2.4
1,779,632	-		GFF1752	0.11	+0.3
1,779,632	-		GFF1752	0.11	-0.2
1,779,637	+		GFF1752	0.11	-1.0
1,779,645	-		GFF1752	0.11	-0.0
1,779,652	+		GFF1752	0.12	-0.0
1,779,652	+		GFF1752	0.12	-1.6
1,779,660	-		GFF1752	0.12	-2.2
1,779,660	-		GFF1752	0.12	-0.3
1,779,660	-		GFF1752	0.12	-1.3
1,779,660	-		GFF1752	0.12	+0.1
1,779,662	+		GFF1752	0.12	+0.4
1,779,662	+		GFF1752	0.12	+0.1
1,779,665	-		GFF1752	0.12	-0.3
1,779,674	+		GFF1752	0.13	-1.0
1,779,707	-		GFF1752	0.14	-1.3
1,779,716	+		GFF1752	0.15	+0.1
1,779,724	-		GFF1752	0.15	-1.7
1,779,728	+		GFF1752	0.15	-0.4
1,779,728	+		GFF1752	0.15	+0.3
1,779,734	+		GFF1752	0.16	-0.6
1,779,741	-		GFF1752	0.16	-1.1
1,779,756	+		GFF1752	0.17	-0.5
1,779,777	+		GFF1752	0.18	-0.8
1,779,784	+		GFF1752	0.18	-1.5
1,779,787	+		GFF1752	0.18	-0.8
1,779,792	-		GFF1752	0.19	+0.7
1,779,799	+		GFF1752	0.19	-0.6
1,779,799	+		GFF1752	0.19	-0.2
1,779,799	+		GFF1752	0.19	+0.5
1,779,799	+		GFF1752	0.19	+0.6
1,779,802	-		GFF1752	0.19	-0.9
1,779,807	-		GFF1752	0.19	-0.2
1,779,807	-		GFF1752	0.19	+0.6
1,779,834	+		GFF1752	0.21	-0.1
1,779,842	-		GFF1752	0.21	+0.1
1,779,847	+		GFF1752	0.21	-0.8
1,779,864	-		GFF1752	0.22	+1.2
1,779,869	+		GFF1752	0.23	-1.3
1,779,869	+		GFF1752	0.23	+1.7
1,779,878	-		GFF1752	0.23	+0.8
1,779,878	-		GFF1752	0.23	-0.2
1,779,879	+		GFF1752	0.23	-0.3
1,779,885	-		GFF1752	0.23	-0.5
1,779,897	-		GFF1752	0.24	+0.9
1,779,914	-		GFF1752	0.25	-1.2
1,779,927	+		GFF1752	0.25	+0.7
1,779,935	-		GFF1752	0.26	-1.6
1,779,956	+		GFF1752	0.27	+1.3
1,779,956	+		GFF1752	0.27	-0.6
1,779,964	+		GFF1752	0.27	+0.4
1,779,964	-		GFF1752	0.27	-0.7
1,779,964	-		GFF1752	0.27	+0.0
1,779,966	+		GFF1752	0.27	+0.0
1,779,972	-		GFF1752	0.28	+1.6
1,779,998	+		GFF1752	0.29	+1.2
1,779,998	+		GFF1752	0.29	-0.1
1,780,011	-		GFF1752	0.30	-1.5
1,780,026	+		GFF1752	0.31	-0.8
1,780,033	+		GFF1752	0.31	-0.2
1,780,035	-		GFF1752	0.31	-0.5
1,780,043	+		GFF1752	0.31	-0.3
1,780,051	-		GFF1752	0.32	-0.2
1,780,056	-		GFF1752	0.32	-1.1
1,780,061	-		GFF1752	0.32	-2.8
1,780,065	+		GFF1752	0.32	-0.2
1,780,065	+		GFF1752	0.32	-1.3
1,780,065	+		GFF1752	0.32	-0.3
1,780,082	+		GFF1752	0.33	-0.6
1,780,090	-		GFF1752	0.34	+0.6
1,780,090	-		GFF1752	0.34	-1.2
1,780,100	+		GFF1752	0.34	+0.5
1,780,161	+		GFF1752	0.37	-1.4
1,780,161	+		GFF1752	0.37	-2.4
1,780,161	+		GFF1752	0.37	-0.8
1,780,169	-		GFF1752	0.38	-0.6
1,780,169	-		GFF1752	0.38	+0.0
1,780,169	-		GFF1752	0.38	-0.6
1,780,169	-		GFF1752	0.38	-1.8
1,780,169	-		GFF1752	0.38	-0.4
1,780,169	-		GFF1752	0.38	+0.0
1,780,171	-		GFF1752	0.38	-0.3
1,780,173	+		GFF1752	0.38	-0.1
1,780,202	+		GFF1752	0.39	+2.2
1,780,207	+		GFF1752	0.40	-1.0
1,780,258	+		GFF1752	0.42	-0.5
1,780,342	-		GFF1752	0.46	-1.2
1,780,349	+		GFF1752	0.47	+0.4
1,780,355	+		GFF1752	0.47	-0.9
1,780,395	+		GFF1752	0.49	+0.3
1,780,403	-		GFF1752	0.50	+0.3
1,780,403	-		GFF1752	0.50	+0.7
1,780,417	+		GFF1752	0.50	-0.0
1,780,417	+		GFF1752	0.50	+0.4
1,780,418	-		GFF1752	0.50	-0.1
1,780,423	+		GFF1752	0.51	-0.6
1,780,425	-		GFF1752	0.51	+0.1
1,780,425	-		GFF1752	0.51	-1.6
1,780,425	-		GFF1752	0.51	+0.2
1,780,425	-		GFF1752	0.51	-1.6
1,780,425	-		GFF1752	0.51	+0.6
1,780,430	-		GFF1752	0.51	-1.3
1,780,430	-		GFF1752	0.51	-1.2
1,780,431	-		GFF1752	0.51	+0.4
1,780,431	-		GFF1752	0.51	+0.9
1,780,452	-		GFF1752	0.52	+0.9
1,780,471	-		GFF1752	0.53	-1.4
1,780,478	+		GFF1752	0.53	-2.5
1,780,486	+		GFF1752	0.54	-0.4
1,780,486	+		GFF1752	0.54	+0.9
1,780,486	-		GFF1752	0.54	-1.7
1,780,486	-		GFF1752	0.54	-1.6
1,780,491	+		GFF1752	0.54	-2.2
1,780,494	-		GFF1752	0.54	-0.8
1,780,499	-		GFF1752	0.54	-0.5
1,780,499	-		GFF1752	0.54	-0.0
1,780,504	-		GFF1752	0.55	-1.7
1,780,507	+		GFF1752	0.55	-1.5
1,780,507	+		GFF1752	0.55	-1.1
1,780,517	+		GFF1752	0.55	+0.5
1,780,517	+		GFF1752	0.55	-0.4
1,780,522	+		GFF1752	0.56	+0.6
1,780,525	-		GFF1752	0.56	-1.1
1,780,535	-		GFF1752	0.56	-1.6
1,780,585	+		GFF1752	0.59	+0.4
1,780,585	+		GFF1752	0.59	-0.4
1,780,589	-		GFF1752	0.59	+0.8
1,780,593	-		GFF1752	0.59	+0.6
1,780,593	-		GFF1752	0.59	-1.1
1,780,600	+		GFF1752	0.60	+1.4
1,780,616	+		GFF1752	0.60	-0.2
1,780,621	+		GFF1752	0.61	-0.1
1,780,624	-		GFF1752	0.61	-0.6
1,780,661	-		GFF1752	0.63	-0.8
1,780,684	+		GFF1752	0.64	+0.4
1,780,692	-		GFF1752	0.64	-1.8
1,780,702	-		GFF1752	0.65	-0.1
1,780,717	-		GFF1752	0.65	+0.4
1,780,729	+		GFF1752	0.66	-0.3
1,780,729	+		GFF1752	0.66	+0.5
1,780,736	-		GFF1752	0.66	-1.1
1,780,746	-		GFF1752	0.67	-3.0
1,780,747	-		GFF1752	0.67	-0.1
1,780,759	-		GFF1752	0.68	+0.5
1,780,764	+		GFF1752	0.68	+0.0
1,780,764	+		GFF1752	0.68	+0.7
1,780,769	+		GFF1752	0.68	+0.4
1,780,779	+		GFF1752	0.69	-1.8
1,780,779	+		GFF1752	0.69	-0.2
1,780,779	+		GFF1752	0.69	-0.8
1,780,779	+		GFF1752	0.69	-0.8
1,780,787	-		GFF1752	0.69	+0.4
1,780,787	-		GFF1752	0.69	-0.8
1,780,787	-		GFF1752	0.69	-0.7
1,780,808	-		GFF1752	0.70	-1.8
1,780,810	-		GFF1752	0.70	+0.9
1,780,837	+		GFF1752	0.72	-1.1
1,780,837	+		GFF1752	0.72	-0.1
1,780,844	-		GFF1752	0.72	-1.8
1,780,845	-		GFF1752	0.72	-1.2
1,780,845	-		GFF1752	0.72	-0.8
1,780,845	-		GFF1752	0.72	-2.0
1,780,845	-		GFF1752	0.72	-1.4
1,780,847	+		GFF1752	0.72	+0.9
1,780,861	+		GFF1752	0.73	-0.8
1,780,861	+		GFF1752	0.73	-2.0
1,780,861	+		GFF1752	0.73	+0.3
1,780,869	-		GFF1752	0.73	+0.4
1,780,869	-		GFF1752	0.73	-1.5
1,780,871	+		GFF1752	0.73	-1.3
1,780,889	-		GFF1752	0.74	+1.7
1,780,894	+		GFF1752	0.74	+0.2
1,780,947	-		GFF1752	0.77	-0.1
1,780,972	+		GFF1752	0.78	-2.0
1,780,972	+		GFF1752	0.78	+0.2
1,781,041	+		GFF1752	0.82	-0.5
1,781,051	+		GFF1752	0.82	-1.0
1,781,059	-		GFF1752	0.83	-0.5
1,781,059	-		GFF1752	0.83	-0.3
1,781,059	-		GFF1752	0.83	+0.4
1,781,081	+		GFF1752	0.84	+0.1
1,781,083	+		GFF1752	0.84	+0.9
1,781,083	+		GFF1752	0.84	+0.7
1,781,089	-		GFF1752	0.84	+0.4
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1,781,216	+				+0.5
1,781,216	+				+0.9
1,781,216	+				-0.1
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1,781,219	-				+0.0
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1,781,221	+				-0.2
1,781,224	-				+0.5
1,781,224	-				-0.5
1,781,224	-				+1.0
1,781,224	-				-0.5
1,781,224	-				-0.2
1,781,224	-				-2.0
1,781,224	-				-1.3
1,781,224	-				+0.2
1,781,224	-				-1.0
1,781,229	-				+0.0
1,781,229	-				-1.9
1,781,229	-				-0.4
1,781,229	-				-0.8
1,781,229	-				+0.4
1,781,229	-				+0.3
1,781,229	-				-0.8
1,781,262	-				+2.1
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1,781,343	+				-1.5
1,781,348	+				-1.0
1,781,348	+				-0.7
1,781,401	-				-1.1
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1,781,538	-				-0.7
1,781,545	-				-0.6
1,781,587	+				-0.1
1,781,596	+				+1.1
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1,781,689	+		GFF1753	0.19	-1.1
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1,781,712	-		GFF1753	0.22	-1.3
1,781,719	+		GFF1753	0.22	-2.7
1,781,727	-		GFF1753	0.23	-1.6
1,781,749	+		GFF1753	0.26	-1.5
1,781,749	+		GFF1753	0.26	-1.4
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1,781,778	+		GFF1753	0.29	+1.2
1,781,780	-		GFF1753	0.29	-1.1
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1,782,239	+		GFF1753	0.81	-1.1
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1,782,239	+		GFF1753	0.81	-2.3
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1,782,265	+		GFF1753	0.84	-0.8
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