Strain Fitness in Sphingobium sp. HT1-2 around GFF1747

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,772,291	-		GFF1746	0.38	+0.7
1,772,323	+		GFF1746	0.40	-1.2
1,772,344	+		GFF1746	0.41	+0.8
1,772,344	+		GFF1746	0.41	-0.2
1,772,344	+		GFF1746	0.41	-1.1
1,772,352	-		GFF1746	0.42	-0.4
1,772,409	+		GFF1746	0.45	-1.8
1,772,417	-		GFF1746	0.46	-2.2
1,772,436	+		GFF1746	0.47	+0.1
1,772,451	-		GFF1746	0.48	+0.6
1,772,468	+		GFF1746	0.49	+0.2
1,772,468	+		GFF1746	0.49	-1.3
1,772,468	+		GFF1746	0.49	-1.6
1,772,498	-		GFF1746	0.51	-1.5
1,772,623	+		GFF1746	0.60	-0.9
1,772,763	-		GFF1746	0.69	-1.3
1,772,798	-		GFF1746	0.71	-1.4
1,772,814	+		GFF1746	0.72	+0.2
1,772,828	-		GFF1746	0.73	-0.3
1,772,841	-		GFF1746	0.74	-1.3
1,772,916	-		GFF1746	0.79	-0.7
1,772,983	+		GFF1746	0.83	-2.1
1,772,983	+		GFF1746	0.83	-1.1
1,772,991	-		GFF1746	0.84	-1.1
1,772,991	-		GFF1746	0.84	-1.1
1,772,991	-		GFF1746	0.84	-1.0
1,773,050	-		GFF1746	0.88	-0.3
1,773,054	-		GFF1746	0.88	-0.5
1,773,074	+		GFF1746	0.89	-2.0
1,773,079	+		GFF1746	0.90	-1.1
1,773,079	+		GFF1746	0.90	-0.1
1,773,087	-				-1.3
1,773,199	-				-0.2
1,773,221	+				-2.4
1,773,221	+				-1.0
1,773,224	-				-1.1
1,773,224	-				-1.9
1,773,224	-				-0.1
1,773,228	+				+1.1
1,773,247	-				-1.3
1,773,268	-				-0.6
1,773,269	-				-1.4
1,773,271	+				-1.3
1,773,279	+				-0.4
1,773,287	-				+0.6
1,773,287	-				-0.6
1,773,287	-				-1.2
1,773,289	-				-0.2
1,773,462	+		GFF1747	0.14	+0.1
1,773,565	-		GFF1747	0.21	-0.2
1,773,570	+		GFF1747	0.21	-1.3
1,773,570	+		GFF1747	0.21	-1.3
1,773,570	+		GFF1747	0.21	-2.0
1,773,578	-		GFF1747	0.21	+0.7
1,773,578	-		GFF1747	0.21	-0.0
1,773,678	+		GFF1747	0.27	+0.8
1,773,755	+		GFF1747	0.32	-0.7
1,773,782	-		GFF1747	0.34	+0.9
1,773,786	-		GFF1747	0.34	-1.4
1,773,844	+		GFF1747	0.38	-0.4
1,773,852	-		GFF1747	0.38	-0.1
1,773,885	+		GFF1747	0.40	+0.9
1,774,094	-		GFF1747	0.53	-1.2
1,774,097	+		GFF1747	0.53	+0.4
1,774,127	+		GFF1747	0.55	-0.7
1,774,165	-		GFF1747	0.57	-1.1
1,774,219	-		GFF1747	0.61	-2.0
1,774,316	-		GFF1747	0.67	-0.1
1,774,396	+		GFF1747	0.72	-1.1
1,774,528	+		GFF1747	0.80	-0.1
1,774,536	-		GFF1747	0.80	-1.4
1,774,536	-		GFF1747	0.80	-1.8
1,774,552	+		GFF1747	0.81	-1.5
1,774,560	-		GFF1747	0.82	-1.2
1,774,571	-		GFF1747	0.82	-1.4
1,774,665	-		GFF1747	0.88	-1.2
1,774,692	+		GFF1747	0.90	-1.9
1,774,717	-				-0.4
1,774,732	+				-2.7
1,774,791	+				+1.6
1,774,791	+				+0.9
1,774,799	-				+0.6
1,774,799	-				-0.9
1,774,799	-				-0.2
1,774,810	+				-0.2
1,774,821	+				-2.2
1,774,821	+				+0.4
1,774,821	+				+0.4
1,774,822	+				-1.5
1,774,822	+				+0.8
1,774,827	+				-0.2
1,774,827	+				-0.2
1,774,827	+				+0.8
1,774,827	+				-1.0
1,774,835	-				+0.5
1,774,835	-				-1.6
1,774,835	-				-0.9
1,774,835	-				+0.5
1,774,883	+				-3.1
1,774,883	+				+0.2
1,774,889	-				-0.7
1,774,928	+				+0.0
1,774,928	+				-1.6
1,774,936	-				-0.5
1,774,936	-				+0.0
1,774,936	-				-2.0
1,774,936	-				-0.8
1,774,936	-				-0.1
1,774,942	-				+1.4
1,774,942	-				-0.5
1,774,942	-				-1.4
1,774,968	-				-0.0
1,774,970	-				-0.4
1,774,970	-				+0.7
1,775,049	+				-0.2
1,775,078	-				+0.2
1,775,082	+				-0.2
1,775,112	+				-1.8
1,775,136	+				+0.0
1,775,166	+		GFF1748	0.13	+0.5
1,775,171	+		GFF1748	0.14	-1.6
1,775,171	+		GFF1748	0.14	-1.2
1,775,176	+		GFF1748	0.14	-1.4
1,775,176	+		GFF1748	0.14	+0.7
1,775,176	+		GFF1748	0.14	+0.4
1,775,176	+		GFF1748	0.14	-0.5
1,775,176	+		GFF1748	0.14	+0.0
1,775,176	+		GFF1748	0.14	-1.4
1,775,176	+		GFF1748	0.14	-1.1
1,775,176	+		GFF1748	0.14	-2.0
1,775,176	+		GFF1748	0.14	+1.0
1,775,184	-		GFF1748	0.15	+0.3
1,775,184	-		GFF1748	0.15	+0.4
1,775,184	-		GFF1748	0.15	+0.8
1,775,184	-		GFF1748	0.15	-1.2
1,775,184	-		GFF1748	0.15	-1.0
1,775,184	-		GFF1748	0.15	-1.2
1,775,184	-		GFF1748	0.15	+1.1
1,775,216	-		GFF1748	0.19	-0.0
1,775,232	+		GFF1748	0.21	-0.1
1,775,240	-		GFF1748	0.22	-2.0
1,775,268	+		GFF1748	0.25	-1.0
1,775,281	-		GFF1748	0.27	-0.1
1,775,294	+		GFF1748	0.29	-1.4
1,775,302	-		GFF1748	0.30	-0.7
1,775,321	+		GFF1748	0.32	-0.6
1,775,321	+		GFF1748	0.32	+0.9
1,775,321	+		GFF1748	0.32	-0.6
1,775,326	+		GFF1748	0.33	-0.0
1,775,329	-		GFF1748	0.33	-0.7
1,775,329	-		GFF1748	0.33	+0.7
1,775,329	-		GFF1748	0.33	-2.0
1,775,357	-		GFF1748	0.36	-0.5
1,775,398	+		GFF1748	0.41	-0.9
1,775,401	-		GFF1748	0.42	-1.9
1,775,403	+		GFF1748	0.42	+0.9
1,775,407	+		GFF1748	0.43	-0.1
1,775,407	-		GFF1748	0.43	-0.4
1,775,408	-		GFF1748	0.43	-1.1
1,775,421	-		GFF1748	0.44	-1.4
1,775,421	-		GFF1748	0.44	-1.2
1,775,426	-		GFF1748	0.45	-0.9
1,775,432	-		GFF1748	0.46	-2.4
1,775,461	-		GFF1748	0.49	-1.4
1,775,507	-		GFF1748	0.55	-1.9
1,775,508	+		GFF1748	0.55	-1.5
1,775,513	+		GFF1748	0.56	-1.9
1,775,513	+		GFF1748	0.56	-1.2
1,775,513	+		GFF1748	0.56	+0.9
1,775,521	-		GFF1748	0.56	-1.1
1,775,521	-		GFF1748	0.56	-0.4
1,775,521	-		GFF1748	0.56	-2.5
1,775,553	+		GFF1748	0.60	-1.9
1,775,565	-		GFF1748	0.62	-0.2
1,775,565	-		GFF1748	0.62	-1.6
1,775,590	+		GFF1748	0.65	-0.1
1,775,603	-		GFF1748	0.67	-2.4
1,775,606	+		GFF1748	0.67	-1.4
1,775,608	-		GFF1748	0.67	-2.0
1,775,613	-		GFF1748	0.68	-0.3
1,775,614	-		GFF1748	0.68	-1.2
1,775,614	-		GFF1748	0.68	+0.5
1,775,623	+		GFF1748	0.69	-2.1
1,775,630	-		GFF1748	0.70	-0.2
1,775,680	+		GFF1748	0.76	-0.9
1,775,688	-		GFF1748	0.77	-0.6
1,775,688	-		GFF1748	0.77	-0.0
1,775,689	-		GFF1748	0.77	-0.2
1,775,690	+		GFF1748	0.77	-1.7
1,775,695	+		GFF1748	0.78	+0.7
1,775,704	+		GFF1748	0.79	-1.3
1,775,712	-		GFF1748	0.80	-0.7
1,775,734	-		GFF1748	0.83	+2.7
1,775,736	-		GFF1748	0.83	+0.5
1,775,739	+		GFF1748	0.83	-1.8
1,775,747	-		GFF1748	0.84	-0.8
1,775,757	-		GFF1748	0.85	-1.3
1,775,757	-		GFF1748	0.85	-0.1
1,775,757	-		GFF1748	0.85	-1.8
1,775,762	-		GFF1748	0.86	-1.8
1,775,775	-		GFF1748	0.88	-1.3
1,775,775	-		GFF1748	0.88	+1.4
1,775,778	-		GFF1748	0.88	+0.4
1,775,807	-				-0.9
1,775,815	-				-0.7
1,775,817	-				-1.2
1,775,823	+				+0.4
1,775,833	+				+0.8
1,775,841	-				+0.2
1,775,848	+				+0.0
1,775,848	-				+0.5
1,775,856	+				-0.1