Strain Fitness in Sphingobium sp. HT1-2 around GFF174

Experiment: EMM_noCarbon with Sucrose and Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF172 and GFF173 are separated by 4 nucleotidesGFF173 and GFF174 are separated by 265 nucleotidesGFF174 and GFF175 are separated by 113 nucleotidesGFF175 and GFF176 are separated by 5 nucleotides GFF172 - Glutathione S-transferase (EC 2.5.1.18), at 174,698 to 175,372 GFF172 GFF173 - hypothetical protein, at 175,377 to 176,015 GFF173 GFF174 - Nucleoside diphosphate kinase (EC 2.7.4.6), at 176,281 to 176,703 GFF174 GFF175 - DNA polymerase III chi subunit (EC 2.7.7.7), at 176,817 to 177,254 GFF175 GFF176 - Cytosol aminopeptidase PepA (EC 3.4.11.1), at 177,260 to 178,705 GFF176 Position (kb) 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1at 175.288 kb on + strand, within GFF172at 175.288 kb on + strand, within GFF172at 175.288 kb on + strand, within GFF172at 175.288 kb on + strand, within GFF172at 175.288 kb on + strand, within GFF172at 175.288 kb on + strand, within GFF172at 175.288 kb on + strand, within GFF172at 175.288 kb on + strand, within GFF172at 175.288 kb on + strand, within GFF172at 175.296 kb on - strand, within GFF172at 175.296 kb on - strand, within GFF172at 175.296 kb on - strand, within GFF172at 175.296 kb on - strand, within GFF172at 175.296 kb on - strand, within GFF172at 175.296 kb on - strand, within GFF172at 175.296 kb on - strand, within GFF172at 175.300 kb on + strand, within GFF172at 175.300 kb on + strand, within GFF172at 175.327 kb on + strandat 175.345 kb on + strandat 175.353 kb on - strandat 175.358 kb on + strandat 175.366 kb on + strandat 175.387 kb on + strandat 175.388 kb on + strandat 175.397 kb on - strandat 175.400 kb on + strandat 175.415 kb on + strandat 175.416 kb on - strandat 175.433 kb on - strandat 175.452 kb on - strand, within GFF173at 175.452 kb on - strand, within GFF173at 175.452 kb on - strand, within GFF173at 175.452 kb on - strand, within GFF173at 175.479 kb on + strand, within GFF173at 175.479 kb on + strand, within GFF173at 175.481 kb on + strand, within GFF173at 175.487 kb on - strand, within GFF173at 175.491 kb on + strand, within GFF173at 175.498 kb on + strand, within GFF173at 175.500 kb on - strand, within GFF173at 175.500 kb on - strand, within GFF173at 175.521 kb on - strand, within GFF173at 175.563 kb on + strand, within GFF173at 175.564 kb on - strand, within GFF173at 175.571 kb on - strand, within GFF173at 175.571 kb on - strand, within GFF173at 175.571 kb on - strand, within GFF173at 175.587 kb on + strand, within GFF173at 175.589 kb on + strand, within GFF173at 175.595 kb on - strand, within GFF173at 175.595 kb on - strand, within GFF173at 175.608 kb on + strand, within GFF173at 175.616 kb on - strand, within GFF173at 175.633 kb on - strand, within GFF173at 175.639 kb on + strand, within GFF173at 175.642 kb on - strand, within GFF173at 175.653 kb on + strand, within GFF173at 175.658 kb on + strand, within GFF173at 175.658 kb on + strand, within GFF173at 175.658 kb on + strand, within GFF173at 175.658 kb on + strand, within GFF173at 175.658 kb on + strand, within GFF173at 175.661 kb on - strand, within GFF173at 175.661 kb on - strand, within GFF173at 175.666 kb on - strand, within GFF173at 175.666 kb on - strand, within GFF173at 175.666 kb on - strand, within GFF173at 175.667 kb on - strand, within GFF173at 175.685 kb on + strand, within GFF173at 175.690 kb on + strand, within GFF173at 175.690 kb on + strand, within GFF173at 175.700 kb on + strand, within GFF173at 175.701 kb on + strand, within GFF173at 175.703 kb on - strand, within GFF173at 175.709 kb on - strand, within GFF173at 175.724 kb on + strand, within GFF173at 175.727 kb on - strand, within GFF173at 175.746 kb on - strand, within GFF173at 175.747 kb on - strand, within GFF173at 175.830 kb on - strand, within GFF173at 175.845 kb on + strand, within GFF173at 175.877 kb on - strand, within GFF173at 175.877 kb on - strand, within GFF173at 175.880 kb on + strand, within GFF173at 175.918 kb on + strand, within GFF173at 175.918 kb on + strand, within GFF173at 175.918 kb on + strand, within GFF173at 175.918 kb on + strand, within GFF173at 175.918 kb on + strand, within GFF173at 175.918 kb on + strand, within GFF173at 175.918 kb on + strand, within GFF173at 175.918 kb on + strand, within GFF173at 175.918 kb on + strand, within GFF173at 175.918 kb on + strand, within GFF173at 175.918 kb on + strand, within GFF173at 175.918 kb on + strand, within GFF173at 175.918 kb on + strand, within GFF173at 175.918 kb on + strand, within GFF173at 175.918 kb on + strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.926 kb on - strand, within GFF173at 175.928 kb on - strand, within GFF173at 175.930 kb on - strand, within GFF173at 175.933 kb on + strand, within GFF173at 175.933 kb on + strand, within GFF173at 175.933 kb on + strand, within GFF173at 175.941 kb on - strand, within GFF173at 175.941 kb on - strand, within GFF173at 175.941 kb on - strand, within GFF173at 175.941 kb on - strand, within GFF173at 175.941 kb on - strand, within GFF173at 175.941 kb on - strand, within GFF173at 175.941 kb on - strand, within GFF173at 175.941 kb on - strand, within GFF173at 175.941 kb on - strand, within GFF173at 175.948 kb on + strand, within GFF173at 175.951 kb on - strand, within GFF173at 175.951 kb on - strand, within GFF173at 175.958 kb on + strandat 175.960 kb on - strandat 175.960 kb on - strandat 175.962 kb on - strandat 175.973 kb on + strandat 175.973 kb on + strandat 175.974 kb on + strandat 175.981 kb on - strandat 175.981 kb on - strandat 175.981 kb on - strandat 175.981 kb on - strandat 175.986 kb on - strandat 176.001 kb on - strandat 176.043 kb on - strandat 176.071 kb on - strandat 176.073 kb on - strandat 176.073 kb on - strandat 176.161 kb on + strandat 176.161 kb on + strandat 176.161 kb on + strandat 176.161 kb on + strandat 176.174 kb on + strandat 176.174 kb on + strandat 176.176 kb on + strandat 176.181 kb on + strandat 176.181 kb on + strandat 176.181 kb on + strandat 176.186 kb on + strandat 176.238 kb on - strandat 176.286 kb on - strandat 176.745 kb on + strandat 176.753 kb on - strandat 176.776 kb on + strandat 176.781 kb on + strandat 176.781 kb on + strandat 176.781 kb on + strandat 176.784 kb on - strandat 176.786 kb on - strandat 176.786 kb on - strandat 176.786 kb on - strandat 176.789 kb on - strandat 176.796 kb on - strandat 176.799 kb on - strandat 176.832 kb on - strandat 176.841 kb on - strandat 176.859 kb on - strandat 176.865 kb on + strand, within GFF175

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
remove
175,288 + GFF172 0.87 +0.1
175,288 + GFF172 0.87 -0.3
175,288 + GFF172 0.87 -0.1
175,288 + GFF172 0.87 -0.9
175,288 + GFF172 0.87 -0.5
175,288 + GFF172 0.87 -1.6
175,288 + GFF172 0.87 -1.1
175,288 + GFF172 0.87 -0.3
175,288 + GFF172 0.87 -0.8
175,296 - GFF172 0.89 -0.7
175,296 - GFF172 0.89 -0.4
175,296 - GFF172 0.89 -0.1
175,296 - GFF172 0.89 -0.3
175,296 - GFF172 0.89 -0.7
175,296 - GFF172 0.89 -0.6
175,296 - GFF172 0.89 -0.6
175,300 + GFF172 0.89 -1.3
175,300 + GFF172 0.89 +0.7
175,327 + +0.3
175,345 + -1.0
175,353 - -0.5
175,358 + +0.1
175,366 + -0.0
175,387 + +0.4
175,388 + +0.2
175,397 - -1.5
175,400 + +0.4
175,415 + +0.6
175,416 - -1.7
175,433 - -1.5
175,452 - GFF173 0.12 +0.8
175,452 - GFF173 0.12 -0.2
175,452 - GFF173 0.12 -0.3
175,452 - GFF173 0.12 +0.3
175,479 + GFF173 0.16 -0.4
175,479 + GFF173 0.16 +0.8
175,481 + GFF173 0.16 +0.4
175,487 - GFF173 0.17 -0.1
175,491 + GFF173 0.18 -0.3
175,498 + GFF173 0.19 +0.2
175,500 - GFF173 0.19 -0.1
175,500 - GFF173 0.19 -0.7
175,521 - GFF173 0.23 -0.4
175,563 + GFF173 0.29 -2.4
175,564 - GFF173 0.29 +0.7
175,571 - GFF173 0.30 -0.9
175,571 - GFF173 0.30 -1.3
175,571 - GFF173 0.30 -2.1
175,587 + GFF173 0.33 +0.2
175,589 + GFF173 0.33 +0.1
175,595 - GFF173 0.34 +1.1
175,595 - GFF173 0.34 +0.8
175,608 + GFF173 0.36 +1.6
175,616 - GFF173 0.37 -1.4
175,633 - GFF173 0.40 -0.4
175,639 + GFF173 0.41 -1.1
175,642 - GFF173 0.41 +0.2
175,653 + GFF173 0.43 +0.2
175,658 + GFF173 0.44 +0.1
175,658 + GFF173 0.44 +0.8
175,658 + GFF173 0.44 +1.0
175,658 + GFF173 0.44 -0.9
175,658 + GFF173 0.44 +0.4
175,661 - GFF173 0.44 -0.7
175,661 - GFF173 0.44 +0.5
175,666 - GFF173 0.45 -0.9
175,666 - GFF173 0.45 +1.2
175,666 - GFF173 0.45 +0.8
175,667 - GFF173 0.45 +1.2
175,685 + GFF173 0.48 +0.0
175,690 + GFF173 0.49 +0.5
175,690 + GFF173 0.49 +0.2
175,700 + GFF173 0.51 -1.0
175,701 + GFF173 0.51 +0.1
175,703 - GFF173 0.51 +0.2
175,709 - GFF173 0.52 -1.9
175,724 + GFF173 0.54 +0.1
175,727 - GFF173 0.55 -1.5
175,746 - GFF173 0.58 -0.3
175,747 - GFF173 0.58 +0.3
175,830 - GFF173 0.71 -0.6
175,845 + GFF173 0.73 -1.3
175,877 - GFF173 0.78 -1.7
175,877 - GFF173 0.78 -0.4
175,880 + GFF173 0.79 +0.0
175,918 + GFF173 0.85 -0.8
175,918 + GFF173 0.85 +0.1
175,918 + GFF173 0.85 -0.6
175,918 + GFF173 0.85 -2.6
175,918 + GFF173 0.85 +0.7
175,918 + GFF173 0.85 +1.2
175,918 + GFF173 0.85 +0.0
175,918 + GFF173 0.85 +0.1
175,918 + GFF173 0.85 -0.1
175,918 + GFF173 0.85 -0.3
175,918 + GFF173 0.85 +0.2
175,918 + GFF173 0.85 -0.8
175,918 + GFF173 0.85 -0.2
175,918 + GFF173 0.85 -0.8
175,918 + GFF173 0.85 -0.3
175,926 - GFF173 0.86 -0.1
175,926 - GFF173 0.86 -0.4
175,926 - GFF173 0.86 -0.7
175,926 - GFF173 0.86 -1.3
175,926 - GFF173 0.86 -2.5
175,926 - GFF173 0.86 -0.1
175,926 - GFF173 0.86 +0.1
175,926 - GFF173 0.86 -0.8
175,926 - GFF173 0.86 -2.3
175,926 - GFF173 0.86 +0.2
175,926 - GFF173 0.86 -0.1
175,926 - GFF173 0.86 -0.8
175,926 - GFF173 0.86 +0.3
175,926 - GFF173 0.86 +0.4
175,926 - GFF173 0.86 -1.8
175,926 - GFF173 0.86 -0.3
175,928 - GFF173 0.86 -0.6
175,930 - GFF173 0.87 -0.5
175,933 + GFF173 0.87 +1.1
175,933 + GFF173 0.87 +0.4
175,933 + GFF173 0.87 -0.8
175,941 - GFF173 0.88 +0.2
175,941 - GFF173 0.88 -0.7
175,941 - GFF173 0.88 -0.3
175,941 - GFF173 0.88 +0.8
175,941 - GFF173 0.88 -1.3
175,941 - GFF173 0.88 +0.2
175,941 - GFF173 0.88 -1.7
175,941 - GFF173 0.88 -0.3
175,941 - GFF173 0.88 +1.5
175,948 + GFF173 0.89 +0.9
175,951 - GFF173 0.90 -0.2
175,951 - GFF173 0.90 -1.6
175,958 + -1.4
175,960 - -0.4
175,960 - -0.3
175,962 - -0.8
175,973 + -1.4
175,973 + -1.6
175,974 + -0.7
175,981 - -1.1
175,981 - -1.0
175,981 - -3.0
175,981 - +0.5
175,986 - -0.3
176,001 - +1.5
176,043 - -0.4
176,071 - -0.9
176,073 - +0.3
176,073 - -0.9
176,161 + +0.2
176,161 + -0.5
176,161 + -3.1
176,161 + +0.0
176,174 + +1.5
176,174 + -2.2
176,176 + -1.8
176,181 + -2.3
176,181 + +1.1
176,181 + +0.4
176,186 + -0.4
176,238 - -1.3
176,286 - +1.2
176,745 + -2.1
176,753 - -2.1
176,776 + -0.7
176,781 + +0.5
176,781 + -0.8
176,781 + -0.6
176,784 - -0.6
176,786 - +0.6
176,786 - +0.1
176,786 - -1.0
176,789 - -1.7
176,796 - +0.1
176,799 - -1.5
176,832 - +0.1
176,841 - -1.2
176,859 - -0.6
176,865 + GFF175 0.11 +0.7

Or see this region's nucleotide sequence