Strain Fitness in Sphingobium sp. HT1-2 around GFF1732

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,757,584	-				-0.9
1,757,589	-				-0.9
1,757,589	-				+0.6
1,757,589	-				+0.4
1,757,637	+				+1.3
1,757,639	+				-1.1
1,757,658	-				+0.3
1,757,661	+				+1.7
1,757,661	+				+1.7
1,757,661	+				-0.4
1,757,661	+				-1.0
1,757,661	+				-2.4
1,757,661	+				-0.2
1,757,664	-				+0.9
1,757,666	+				-0.2
1,757,669	-				-1.5
1,757,669	-				+0.9
1,757,669	-				-0.7
1,757,669	-				-1.1
1,757,669	-				+1.4
1,757,669	-				-1.0
1,757,669	-				+0.1
1,757,678	+				+0.6
1,757,678	+				-1.7
1,757,679	-				+0.3
1,757,686	-				+0.0
1,757,686	-				-0.8
1,757,695	-				+0.4
1,757,705	-				-1.5
1,757,759	-				+1.4
1,757,776	+				-2.1
1,757,786	-		GFF1731	0.10	-0.1
1,757,787	-		GFF1731	0.11	-0.3
1,757,944	+		GFF1731	0.31	-0.5
1,757,966	-		GFF1731	0.34	+1.0
1,757,993	+		GFF1731	0.38	+0.5
1,757,993	+		GFF1731	0.38	-0.3
1,757,993	+		GFF1731	0.38	+0.3
1,757,993	+		GFF1731	0.38	-3.0
1,757,993	+		GFF1731	0.38	+0.2
1,757,993	+		GFF1731	0.38	+0.5
1,757,993	+		GFF1731	0.38	-0.9
1,757,993	+		GFF1731	0.38	-0.0
1,757,999	-		GFF1731	0.39	-0.7
1,758,001	-		GFF1731	0.39	+1.8
1,758,001	-		GFF1731	0.39	-1.5
1,758,001	-		GFF1731	0.39	-0.6
1,758,001	-		GFF1731	0.39	+1.0
1,758,014	-		GFF1731	0.41	+0.8
1,758,018	+		GFF1731	0.41	-0.9
1,758,033	-		GFF1731	0.43	-1.7
1,758,038	-		GFF1731	0.44	-1.2
1,758,041	+		GFF1731	0.44	+0.0
1,758,049	-		GFF1731	0.45	-0.6
1,758,064	-		GFF1731	0.47	+0.2
1,758,069	-		GFF1731	0.48	+0.1
1,758,095	+		GFF1731	0.51	+0.3
1,758,108	-		GFF1731	0.53	-1.8
1,758,140	-		GFF1731	0.57	-1.7
1,758,227	-		GFF1731	0.69	+2.1
1,758,244	+		GFF1731	0.71	-1.1
1,758,244	+		GFF1731	0.71	-0.2
1,758,260	+		GFF1731	0.73	+0.4
1,758,315	+		GFF1731	0.80	+1.0
1,758,327	+		GFF1731	0.82	+0.7
1,758,336	+		GFF1731	0.83	+1.0
1,758,497	+				-1.5
1,758,497	+				+0.3
1,758,497	+				+0.2
1,758,497	+				-0.1
1,758,497	+				-1.6
1,758,505	-				+2.8
1,758,505	-				+0.3
1,758,505	-				+0.5
1,758,505	-				+0.1
1,758,507	+				+0.4
1,758,509	+				+0.1
1,758,530	+				+0.3
1,758,538	-				-0.2
1,758,540	+				+1.0
1,758,540	+				-1.3
1,758,540	+				+0.3
1,758,540	+				-0.9
1,758,540	+				+0.3
1,758,548	-				+0.4
1,758,548	-				+0.4
1,758,552	+				-1.6
1,758,561	-				+0.1
1,758,564	-				-2.5
1,758,569	-				-0.4
1,758,579	+				-0.2
1,758,621	-				-0.1
1,758,621	-				+0.4
1,758,640	+				-0.9
1,758,640	+				-0.0
1,758,640	+				+1.2
1,758,647	+				+0.1
1,758,653	+				+0.1
1,758,666	+		GFF1732	0.11	+0.3
1,758,678	-		GFF1732	0.13	+1.1
1,758,683	-		GFF1732	0.13	+0.1
1,758,688	-		GFF1732	0.14	+0.9
1,758,712	+		GFF1732	0.17	-0.5
1,758,727	+		GFF1732	0.19	-1.6
1,758,734	+		GFF1732	0.19	-0.2
1,758,739	+		GFF1732	0.20	-0.9
1,758,740	+		GFF1732	0.20	+0.7
1,758,752	-		GFF1732	0.22	-0.3
1,758,752	-		GFF1732	0.22	-0.6
1,758,839	-		GFF1732	0.32	+0.8
1,758,864	-		GFF1732	0.35	-1.2
1,758,875	+		GFF1732	0.36	+0.6
1,758,933	+		GFF1732	0.43	-0.1
1,758,942	+		GFF1732	0.44	-0.3
1,758,952	+		GFF1732	0.45	-0.1
1,758,977	+		GFF1732	0.48	+0.4
1,758,985	-		GFF1732	0.49	+0.3
1,758,985	-		GFF1732	0.49	-0.5
1,758,987	+		GFF1732	0.50	-1.0
1,758,990	-		GFF1732	0.50	-0.4
1,758,995	-		GFF1732	0.50	+1.4
1,759,005	-		GFF1732	0.52	-1.3
1,759,005	-		GFF1732	0.52	+0.4
1,759,006	+		GFF1732	0.52	+0.4
1,759,101	+		GFF1732	0.63	+0.8
1,759,101	+		GFF1732	0.63	+0.2
1,759,108	+		GFF1732	0.64	-0.7
1,759,108	+		GFF1732	0.64	-1.9
1,759,108	+		GFF1732	0.64	-1.0
1,759,108	+		GFF1732	0.64	+0.5
1,759,108	+		GFF1732	0.64	-1.8
1,759,128	+		GFF1732	0.66	-0.6
1,759,146	-		GFF1732	0.68	+1.0
1,759,146	-		GFF1732	0.68	-1.4
1,759,189	+		GFF1732	0.74	+0.9
1,759,189	+		GFF1732	0.74	+0.1
1,759,211	+		GFF1732	0.76	+0.6
1,759,224	-		GFF1732	0.78	+0.5
1,759,386	+				-0.4
1,759,388	+				+0.0
1,759,408	+				-1.7
1,759,487	+				-2.2
1,759,495	-				-0.3
1,759,495	-				+0.5
1,759,495	-				-0.9
1,759,495	-				-1.8
1,759,501	+				-1.3
1,759,501	+				+0.2
1,759,501	+				+0.1
1,759,501	+				+0.4
1,759,501	+				-0.2
1,759,509	-				-0.3
1,759,509	-				-1.3
1,759,509	-				-1.3
1,759,511	+				-1.3
1,759,512	+				+0.3
1,759,522	+				-1.0
1,759,522	+				+1.2
1,759,527	+				+0.8
1,759,553	-				-0.4
1,759,563	-				-0.9
1,759,602	-		GFF1733	0.11	-1.0
1,759,612	-		GFF1733	0.12	-0.4
1,759,614	-		GFF1733	0.12	-1.9
1,759,633	-		GFF1733	0.14	-0.1
1,759,634	+		GFF1733	0.14	-1.1
1,759,638	-		GFF1733	0.15	+1.0
1,759,642	-		GFF1733	0.15	-0.4
1,759,642	-		GFF1733	0.15	-0.4
1,759,705	+		GFF1733	0.21	-0.7
1,759,705	+		GFF1733	0.21	-1.3
1,759,705	+		GFF1733	0.21	+0.6
1,759,718	+		GFF1733	0.22	+0.4
1,759,728	+		GFF1733	0.23	-1.6
1,759,728	+		GFF1733	0.23	+0.1
1,759,728	+		GFF1733	0.23	-0.5
1,759,728	+		GFF1733	0.23	-2.6
1,759,728	+		GFF1733	0.23	-1.0
1,759,731	-		GFF1733	0.24	+0.4
1,759,736	-		GFF1733	0.24	-1.2
1,759,736	-		GFF1733	0.24	+0.0
1,759,736	-		GFF1733	0.24	+0.5
1,759,736	-		GFF1733	0.24	+0.2
1,759,743	+		GFF1733	0.25	-1.7
1,759,761	-		GFF1733	0.26	-0.1
1,759,801	+		GFF1733	0.30	-2.8
1,759,801	+		GFF1733	0.30	-0.8
1,759,809	-		GFF1733	0.31	-1.0
1,759,833	+		GFF1733	0.33	+0.3
1,759,835	+		GFF1733	0.33	-0.4
1,759,845	+		GFF1733	0.34	-1.4
1,759,857	-		GFF1733	0.36	+0.2
1,759,867	+		GFF1733	0.36	-0.4
1,759,871	+		GFF1733	0.37	+0.4
1,759,902	+		GFF1733	0.40	-1.6
1,759,921	-		GFF1733	0.42	-1.9
1,759,946	+		GFF1733	0.44	-1.0
1,759,968	-		GFF1733	0.46	-1.0
1,760,000	-		GFF1733	0.49	-0.8
1,760,002	-		GFF1733	0.49	+0.2
1,760,014	+		GFF1733	0.50	+0.1
1,760,022	-		GFF1733	0.51	+1.5
1,760,040	-		GFF1733	0.53	-1.3
1,760,051	+		GFF1733	0.54	+1.5
1,760,051	+		GFF1733	0.54	-0.6
1,760,052	+		GFF1733	0.54	+0.3
1,760,059	-		GFF1733	0.55	-0.3
1,760,085	+		GFF1733	0.57	+0.0
1,760,137	-		GFF1733	0.62	-1.4
1,760,199	+		GFF1733	0.68	+0.6
1,760,199	+		GFF1733	0.68	-1.8
1,760,199	+		GFF1733	0.68	-0.1
1,760,199	+		GFF1733	0.68	-1.4
1,760,201	+		GFF1733	0.68	-0.8
1,760,201	+		GFF1733	0.68	-1.3
1,760,201	+		GFF1733	0.68	+0.6
1,760,201	+		GFF1733	0.68	-0.5
1,760,201	+		GFF1733	0.68	+0.8
1,760,201	+		GFF1733	0.68	-1.0
1,760,207	-		GFF1733	0.69	-0.3
1,760,207	-		GFF1733	0.69	+0.1
1,760,209	-		GFF1733	0.69	-1.2
1,760,209	-		GFF1733	0.69	+0.1
1,760,231	-		GFF1733	0.71	-0.5
1,760,235	+		GFF1733	0.72	+0.6
1,760,235	+		GFF1733	0.72	-1.5
1,760,243	-		GFF1733	0.72	-0.9
1,760,248	-		GFF1733	0.73	+1.1
1,760,256	+		GFF1733	0.74	-0.5
1,760,259	+		GFF1733	0.74	-0.3
1,760,270	+		GFF1733	0.75	-1.8
1,760,270	+		GFF1733	0.75	-1.8
1,760,278	-		GFF1733	0.76	+0.5
1,760,278	-		GFF1733	0.76	-1.8
1,760,278	-		GFF1733	0.76	-0.4
1,760,279	+		GFF1733	0.76	-0.8
1,760,287	-		GFF1733	0.76	-1.7
1,760,287	-		GFF1733	0.76	+0.4
1,760,297	+		GFF1733	0.77	+0.4
1,760,311	-		GFF1733	0.79	+0.2
1,760,338	+		GFF1733	0.81	-2.3
1,760,346	-		GFF1733	0.82	-2.8
1,760,362	-		GFF1733	0.84	-0.7
1,760,366	+		GFF1733	0.84	-0.2