Strain Fitness in Sphingobium sp. HT1-2 around GFF1696

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,720,307	+		GFF1695	0.70	+0.2
1,720,314	+		GFF1695	0.70	+1.2
1,720,315	+		GFF1695	0.70	-0.2
1,720,330	+		GFF1695	0.71	+0.5
1,720,330	+		GFF1695	0.71	-0.5
1,720,334	+		GFF1695	0.71	-1.1
1,720,335	+		GFF1695	0.71	-1.7
1,720,338	-		GFF1695	0.71	+0.7
1,720,338	-		GFF1695	0.71	-2.1
1,720,338	-		GFF1695	0.71	+0.5
1,720,338	-		GFF1695	0.71	-0.2
1,720,338	-		GFF1695	0.71	+0.2
1,720,338	-		GFF1695	0.71	+0.2
1,720,338	-		GFF1695	0.71	-0.9
1,720,338	-		GFF1695	0.71	+0.8
1,720,348	-		GFF1695	0.71	-0.5
1,720,350	-		GFF1695	0.71	-0.2
1,720,350	-		GFF1695	0.71	-0.1
1,720,355	-		GFF1695	0.71	+1.9
1,720,361	-		GFF1695	0.72	+0.0
1,720,361	-		GFF1695	0.72	-0.4
1,720,361	-		GFF1695	0.72	+0.7
1,720,361	-		GFF1695	0.72	+0.1
1,720,371	-		GFF1695	0.72	-0.2
1,720,371	-		GFF1695	0.72	-2.5
1,720,371	-		GFF1695	0.72	-0.5
1,720,371	-		GFF1695	0.72	+0.4
1,720,371	-		GFF1695	0.72	+0.5
1,720,376	-		GFF1695	0.72	+0.2
1,720,479	+		GFF1695	0.76	-0.5
1,720,479	+		GFF1695	0.76	-1.1
1,720,479	+		GFF1695	0.76	-1.2
1,720,479	+		GFF1695	0.76	-0.7
1,720,495	+		GFF1695	0.77	-1.3
1,720,501	-		GFF1695	0.77	-2.0
1,720,501	-		GFF1695	0.77	+0.2
1,720,512	+		GFF1695	0.78	+0.3
1,720,512	+		GFF1695	0.78	-0.4
1,720,520	-		GFF1695	0.78	-1.6
1,720,520	-		GFF1695	0.78	+0.5
1,720,520	-		GFF1695	0.78	-1.5
1,720,525	+		GFF1695	0.78	-0.1
1,720,528	-		GFF1695	0.78	+0.6
1,720,540	-		GFF1695	0.79	-1.5
1,720,578	+		GFF1695	0.80	-1.7
1,720,584	+		GFF1695	0.80	-0.3
1,720,586	-		GFF1695	0.81	+0.6
1,720,586	-		GFF1695	0.81	-0.9
1,720,592	-		GFF1695	0.81	+0.7
1,720,592	-		GFF1695	0.81	+0.1
1,720,597	-		GFF1695	0.81	-0.6
1,720,597	-		GFF1695	0.81	+0.1
1,720,600	-		GFF1695	0.81	-2.2
1,720,611	+		GFF1695	0.82	-1.1
1,720,611	+		GFF1695	0.82	-0.1
1,720,613	-		GFF1695	0.82	-0.2
1,720,619	-		GFF1695	0.82	+0.9
1,720,619	-		GFF1695	0.82	-0.6
1,720,619	-		GFF1695	0.82	+0.8
1,720,631	-		GFF1695	0.82	-0.2
1,720,658	+		GFF1695	0.83	+0.2
1,720,662	-		GFF1695	0.84	+0.4
1,720,666	-		GFF1695	0.84	-1.2
1,720,668	+		GFF1695	0.84	-0.9
1,720,668	+		GFF1695	0.84	+1.2
1,720,668	+		GFF1695	0.84	-0.1
1,720,668	+		GFF1695	0.84	-0.7
1,720,668	+		GFF1695	0.84	-0.6
1,720,668	+		GFF1695	0.84	+0.0
1,720,668	+		GFF1695	0.84	-1.3
1,720,668	+		GFF1695	0.84	-0.6
1,720,668	+		GFF1695	0.84	+0.7
1,720,668	+		GFF1695	0.84	-0.3
1,720,676	-		GFF1695	0.84	-2.3
1,720,676	-		GFF1695	0.84	-2.3
1,720,681	-		GFF1695	0.84	-1.8
1,720,684	+		GFF1695	0.84	-1.9
1,720,768	+		GFF1695	0.88	-1.5
1,720,775	-		GFF1695	0.88	-0.5
1,720,775	-		GFF1695	0.88	-0.5
1,720,775	-		GFF1695	0.88	+0.1
1,720,776	-		GFF1695	0.88	+0.7
1,720,782	+		GFF1695	0.88	-1.6
1,720,782	+		GFF1695	0.88	-1.1
1,720,782	+		GFF1695	0.88	-1.7
1,720,782	+		GFF1695	0.88	-1.1
1,720,782	+		GFF1695	0.88	+0.4
1,720,782	+		GFF1695	0.88	-0.5
1,720,790	-		GFF1695	0.89	-0.9
1,720,790	-		GFF1695	0.89	+1.4
1,720,790	-		GFF1695	0.89	-2.2
1,720,813	+		GFF1695	0.89	+1.7
1,720,823	+		GFF1695	0.90	-1.3
1,720,828	+				+0.6
1,720,831	-				-0.2
1,720,833	+				-1.1
1,720,836	-				+0.5
1,720,846	-				+1.2
1,720,846	-				-0.4
1,720,848	+				-1.1
1,720,850	+				-0.4
1,720,856	-				-1.2
1,720,856	-				-1.5
1,720,858	+				-0.1
1,720,869	+				-0.1
1,720,869	+				-0.4
1,720,897	-				-0.1
1,720,905	+				-2.1
1,720,910	+				-0.5
1,720,918	+				-0.5
1,720,918	-				-0.3
1,720,924	+				-0.3
1,720,928	+				+0.8
1,720,928	-				-1.5
1,720,933	+				-0.3
1,720,933	-				-1.5
1,720,941	-				+0.5
1,720,954	-				-2.5
1,720,954	-				+0.4
1,720,954	-				+0.5
1,720,984	+				+0.7
1,720,992	-				-2.0
1,720,992	-				-0.3
1,721,004	-				+0.6
1,721,014	+				-0.8
1,721,027	+				+0.9
1,721,038	-				-0.0
1,721,044	+				+1.1
1,721,048	-				-0.5
1,721,068	-				-1.5
1,721,086	-				+0.7
1,721,129	+				-1.0
1,721,129	+				-2.8
1,721,129	+				+0.4
1,721,129	+				-1.1
1,721,129	+				-1.2
1,721,129	+				+0.9
1,721,129	+				-1.8
1,721,129	+				+0.1
1,721,129	+				-0.6
1,721,129	+				-1.1
1,721,129	+				-0.1
1,721,129	+				-0.2
1,721,129	+				-0.2
1,721,129	+				+0.1
1,721,129	+				-0.3
1,721,129	+				-1.5
1,721,129	+				-1.9
1,721,137	-				+0.6
1,721,137	-				-0.1
1,721,137	-				+0.3
1,721,137	-				+0.5
1,721,137	-				-0.3
1,721,137	-				+0.0
1,721,137	-				+0.2
1,721,137	-				+0.4
1,721,137	-				-1.3
1,721,137	-				-0.4
1,721,137	-				+0.2
1,721,137	-				-1.3
1,721,137	-				+1.0
1,721,139	+				-0.2
1,721,147	-				+1.2
1,721,147	-				-2.0
1,721,186	-				-0.9
1,721,196	-				+1.6
1,721,198	+				-1.5
1,721,198	+				-1.2
1,721,206	-				+0.7
1,721,206	-				+0.8
1,721,220	-				-0.5
1,721,220	-				-0.6
1,721,220	-				+1.0
1,721,287	-				-0.1
1,721,340	+				-1.9
1,721,347	+				-0.1
1,721,347	+				-0.2
1,721,355	-				+1.1
1,721,355	-				+1.6
1,721,360	-				-1.9
1,721,372	+				+0.9
1,721,374	-				+0.4
1,721,390	-				+1.3
1,721,412	-				-1.3
1,721,418	+				+0.3
1,721,422	-				+0.4
1,721,427	-				-2.6
1,721,427	-				-1.7
1,721,430	+				+0.8
1,721,437	-				+0.4
1,721,438	-				-2.0
1,721,440	+				-0.5
1,721,448	-				-0.1
1,721,453	+				-0.4
1,721,461	-				+0.3
1,721,461	-				-1.0
1,721,466	+				-0.6
1,721,466	+				+0.5
1,721,466	+				+0.4
1,721,468	+				-1.0
1,721,471	-				-0.1
1,721,481	+				+0.4
1,721,485	-				+0.4
1,721,504	-				-0.1
1,721,518	+				-1.2
1,721,523	+				+0.9
1,721,540	+				-0.6
1,721,545	+				-0.3
1,721,553	-				+1.0
1,721,566	+				+0.0
1,721,569	+				-1.0
1,721,580	+				-0.1
1,721,580	+				+0.3
1,721,588	-				-1.1
1,721,595	+		GFF1696	0.10	+0.9
1,721,596	-		GFF1696	0.10	-0.5
1,721,598	-		GFF1696	0.10	-1.5
1,721,601	-		GFF1696	0.10	-0.2
1,721,638	+		GFF1696	0.11	-1.6
1,721,638	+		GFF1696	0.11	+0.4
1,721,646	-		GFF1696	0.12	+0.3
1,721,659	+		GFF1696	0.12	-0.4
1,721,681	+		GFF1696	0.13	-1.2
1,721,711	+		GFF1696	0.14	-0.5
1,721,719	-		GFF1696	0.14	-1.2
1,721,729	-		GFF1696	0.15	-0.1
1,721,748	+		GFF1696	0.15	+0.6
1,721,748	+		GFF1696	0.15	+0.8
1,721,756	-		GFF1696	0.16	+0.2
1,721,768	+		GFF1696	0.16	-0.8
1,721,786	+		GFF1696	0.17	-1.4
1,721,794	-		GFF1696	0.17	-2.3
1,721,794	-		GFF1696	0.17	-1.4
1,721,809	-		GFF1696	0.17	-0.2
1,721,825	+		GFF1696	0.18	-0.6
1,721,825	+		GFF1696	0.18	-0.7
1,721,825	+		GFF1696	0.18	-0.9
1,721,825	+		GFF1696	0.18	-1.0
1,721,825	+		GFF1696	0.18	+0.5
1,721,825	+		GFF1696	0.18	-1.6
1,721,829	+		GFF1696	0.18	+1.4
1,721,833	-		GFF1696	0.18	-0.3
1,721,833	-		GFF1696	0.18	-0.9
1,721,833	-		GFF1696	0.18	+0.5
1,721,833	-		GFF1696	0.18	-0.3
1,721,833	-		GFF1696	0.18	+0.4
1,721,833	-		GFF1696	0.18	+1.2
1,721,849	+		GFF1696	0.19	+0.5
1,721,874	+		GFF1696	0.20	-0.6
1,721,879	+		GFF1696	0.20	+0.8
1,721,901	-		GFF1696	0.21	-0.2
1,721,933	-		GFF1696	0.22	-0.1
1,721,967	+		GFF1696	0.23	+1.1
1,721,975	-		GFF1696	0.23	-1.9
1,722,003	+		GFF1696	0.24	-0.1
1,722,016	+		GFF1696	0.24	+0.1
1,722,043	+		GFF1696	0.25	+0.5
1,722,051	-		GFF1696	0.26	-0.7
1,722,051	-		GFF1696	0.26	-0.2
1,722,122	+		GFF1696	0.28	-0.1
1,722,171	-		GFF1696	0.30	+0.2
1,722,190	-		GFF1696	0.30	-1.1
1,722,194	+		GFF1696	0.31	-0.5
1,722,202	-		GFF1696	0.31	-1.5
1,722,204	+		GFF1696	0.31	-0.3
1,722,212	-		GFF1696	0.31	+0.8
1,722,218	-		GFF1696	0.31	-0.8
1,722,222	-		GFF1696	0.32	-0.6
1,722,242	-		GFF1696	0.32	-0.1
1,722,268	-		GFF1696	0.33	-2.0
1,722,268	-		GFF1696	0.33	-1.7
1,722,277	-		GFF1696	0.33	+0.6
1,722,284	+		GFF1696	0.34	-2.3
1,722,284	+		GFF1696	0.34	+0.7
1,722,292	-		GFF1696	0.34	+1.1
1,722,295	+		GFF1696	0.34	-0.0
1,722,300	+		GFF1696	0.34	-2.8
1,722,302	-		GFF1696	0.34	+0.0
1,722,303	-		GFF1696	0.34	-1.1
1,722,303	-		GFF1696	0.34	+1.8
1,722,321	+		GFF1696	0.35	-1.1
1,722,331	+		GFF1696	0.35	+0.4
1,722,332	+		GFF1696	0.35	-0.4
1,722,332	+		GFF1696	0.35	+0.6
1,722,334	-		GFF1696	0.35	-2.1
1,722,340	-		GFF1696	0.36	+1.4
1,722,342	+		GFF1696	0.36	-1.3
1,722,366	+		GFF1696	0.36	+0.1
1,722,375	+		GFF1696	0.37	-1.3
1,722,376	+		GFF1696	0.37	-0.0
1,722,381	+		GFF1696	0.37	+0.2
1,722,381	+		GFF1696	0.37	+0.3
1,722,399	+		GFF1696	0.38	+0.7
1,722,399	+		GFF1696	0.38	+0.8
1,722,407	-		GFF1696	0.38	+1.3
1,722,426	-		GFF1696	0.39	-1.3
1,722,430	+		GFF1696	0.39	+0.5
1,722,438	+		GFF1696	0.39	-0.3
1,722,438	+		GFF1696	0.39	-1.2
1,722,443	+		GFF1696	0.39	-0.1
1,722,444	-		GFF1696	0.39	+0.2
1,722,444	-		GFF1696	0.39	+0.2
1,722,444	-		GFF1696	0.39	-2.3
1,722,446	-		GFF1696	0.39	-1.2
1,722,446	-		GFF1696	0.39	-1.7
1,722,446	-		GFF1696	0.39	+1.6
1,722,446	-		GFF1696	0.39	-0.1
1,722,446	-		GFF1696	0.39	+1.6
1,722,488	-		GFF1696	0.41	+0.2
1,722,527	+		GFF1696	0.42	-0.8
1,722,527	+		GFF1696	0.42	-2.3
1,722,535	-		GFF1696	0.42	-1.7
1,722,552	+		GFF1696	0.43	+0.9
1,722,576	+		GFF1696	0.44	-0.1
1,722,576	-		GFF1696	0.44	-0.9
1,722,578	+		GFF1696	0.44	+0.7
1,722,578	+		GFF1696	0.44	+1.5
1,722,578	+		GFF1696	0.44	-0.9
1,722,578	+		GFF1696	0.44	-0.4
1,722,578	+		GFF1696	0.44	-0.8
1,722,586	-		GFF1696	0.44	-0.5
1,722,586	-		GFF1696	0.44	-0.2
1,722,586	-		GFF1696	0.44	+0.3
1,722,586	-		GFF1696	0.44	-0.1
1,722,586	-		GFF1696	0.44	-0.5
1,722,586	-		GFF1696	0.44	-1.7
1,722,586	-		GFF1696	0.44	-0.3
1,722,586	-		GFF1696	0.44	-0.4
1,722,586	-		GFF1696	0.44	+0.5
1,722,610	+		GFF1696	0.45	+0.3
1,722,610	+		GFF1696	0.45	-1.9
1,722,610	+		GFF1696	0.45	-2.6
1,722,610	+		GFF1696	0.45	-1.3
1,722,610	+		GFF1696	0.45	-0.9
1,722,610	+		GFF1696	0.45	+0.8
1,722,610	+		GFF1696	0.45	+0.6
1,722,618	-		GFF1696	0.45	-0.4
1,722,618	-		GFF1696	0.45	-0.2
1,722,618	-		GFF1696	0.45	-0.1
1,722,618	-		GFF1696	0.45	-0.8
1,722,639	-		GFF1696	0.46	+1.3
1,722,644	+		GFF1696	0.46	+1.4
1,722,645	-		GFF1696	0.46	+0.6
1,722,672	+		GFF1696	0.47	-1.5
1,722,721	+		GFF1696	0.49	+0.2
1,722,747	+		GFF1696	0.50	+1.4
1,722,754	+		GFF1696	0.50	-0.1
1,722,755	-		GFF1696	0.50	-0.9
1,722,792	-		GFF1696	0.51	-2.0
1,722,795	-		GFF1696	0.51	-1.5
1,722,798	+		GFF1696	0.51	-0.5
1,722,807	+		GFF1696	0.52	+1.0
1,722,815	-		GFF1696	0.52	-1.4
1,722,838	+		GFF1696	0.53	+0.4
1,722,842	+		GFF1696	0.53	-1.2
1,722,872	+		GFF1696	0.54	+0.8
1,722,877	+		GFF1696	0.54	-1.9
1,722,882	+		GFF1696	0.54	-1.4
1,722,882	+		GFF1696	0.54	+1.2
1,722,890	-		GFF1696	0.54	-2.4
1,722,890	-		GFF1696	0.54	+1.1
1,722,890	-		GFF1696	0.54	-0.3
1,722,890	-		GFF1696	0.54	-0.9
1,722,892	+		GFF1696	0.54	+0.1
1,722,895	-		GFF1696	0.55	+0.4
1,722,895	-		GFF1696	0.55	-0.3
1,722,908	-		GFF1696	0.55	-0.1
1,722,920	+		GFF1696	0.55	+0.6
1,722,928	-		GFF1696	0.56	-0.9
1,722,928	-		GFF1696	0.56	-0.7
1,722,928	-		GFF1696	0.56	-2.6
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1,723,945	+				+0.9
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