Strain Fitness in Sphingobium sp. HT1-2 around GFF1684

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,710,489	+				-1.1
1,710,489	+				-2.4
1,710,489	+				-1.5
1,710,489	+				+0.5
1,710,492	-				-0.5
1,710,492	-				+0.0
1,710,497	-				-2.8
1,710,497	-				+0.5
1,710,510	+				+2.1
1,710,510	+				-0.5
1,710,512	-				+0.2
1,710,571	+		GFF1682	0.50	-0.5
1,710,571	+		GFF1682	0.50	-0.3
1,710,579	-		GFF1682	0.57	+0.2
1,710,579	-		GFF1682	0.57	+1.2
1,710,579	-		GFF1682	0.57	-0.3
1,710,579	-		GFF1682	0.57	+0.5
1,710,579	-		GFF1682	0.57	-1.1
1,710,579	-		GFF1682	0.57	-1.0
1,710,589	-		GFF1682	0.65	-0.6
1,710,593	+		GFF1682	0.68	-1.5
1,710,593	+		GFF1682	0.68	+0.4
1,710,606	-		GFF1682	0.79	+0.5
1,710,606	-		GFF1682	0.79	-0.7
1,710,610	-		GFF1682	0.82	+0.2
1,710,615	-		GFF1682	0.86	-2.0
1,710,625	+				-1.8
1,710,632	+				+0.7
1,710,633	-				+0.8
1,710,633	-				-0.3
1,710,633	-				-0.1
1,710,633	-				-0.0
1,710,634	-				-0.7
1,710,654	+				-1.8
1,710,662	-				-0.0
1,710,672	+				-0.1
1,710,678	+				-1.8
1,710,684	+				-1.3
1,710,685	+				-0.5
1,710,690	-				+0.0
1,710,692	-				+0.8
1,710,692	-				+0.1
1,710,699	+				-0.2
1,710,727	+				-1.4
1,710,727	+				-0.7
1,710,728	-				-0.9
1,710,736	-				-0.8
1,710,747	-				-0.3
1,710,749	+				-0.1
1,710,762	+				+0.9
1,710,762	+				-0.3
1,710,803	+				-0.3
1,710,803	+				-0.3
1,710,803	+				+0.5
1,710,811	-				+0.5
1,710,817	+				+0.5
1,710,817	+				+0.5
1,710,817	+				-1.6
1,710,817	+				-0.6
1,710,825	-				+1.1
1,710,825	-				+0.2
1,710,835	-				-1.1
1,710,835	-				+0.4
1,710,838	+				+0.8
1,710,838	+				-1.2
1,710,838	+				-1.2
1,710,846	-				-0.9
1,710,887	-				-0.3
1,710,898	-				-0.5
1,710,898	-				+0.9
1,710,898	-				+0.0
1,710,898	-				-0.5
1,710,898	-				+1.1
1,710,898	-				-1.2
1,710,898	-				-1.1
1,710,908	-				+1.2
1,710,908	-				+0.4
1,710,908	-				+0.8
1,710,925	+				+0.4
1,710,926	+				+0.2
1,710,936	+				-2.0
1,710,936	+				+0.2
1,710,936	+				+0.1
1,710,936	+				-0.2
1,710,963	+				+0.9
1,710,971	-				-1.6
1,710,971	-				+0.4
1,710,976	-				-1.5
1,710,976	-				-2.4
1,710,978	-				+0.7
1,710,978	-				+1.4
1,711,007	+				-0.5
1,711,041	+		GFF1683	0.17	-0.9
1,711,049	-		GFF1683	0.21	-0.9
1,711,068	-		GFF1683	0.31	+0.9
1,711,073	-		GFF1683	0.34	+0.2
1,711,073	-		GFF1683	0.34	-1.5
1,711,078	-		GFF1683	0.37	+1.0
1,711,099	-		GFF1683	0.48	-0.4
1,711,099	-		GFF1683	0.48	-0.6
1,711,099	-		GFF1683	0.48	-0.8
1,711,101	+		GFF1683	0.49	-0.5
1,711,106	+		GFF1683	0.51	-1.1
1,711,133	+		GFF1683	0.66	+0.4
1,711,133	+		GFF1683	0.66	-1.5
1,711,133	+		GFF1683	0.66	-0.3
1,711,141	-		GFF1683	0.70	-1.7
1,711,225	+				-0.3
1,711,235	+		GFF1684	0.18	-0.5
1,711,245	+		GFF1684	0.29	+0.5
1,711,282	-		GFF1684	0.69	-1.2
1,711,320	+				-0.4
1,711,328	-				+0.7
1,711,328	-				-0.6
1,711,328	-				-2.1
1,711,328	-				-2.9
1,711,328	-				-1.7
1,711,328	-				-0.4
1,711,335	+				-1.8
1,711,335	+				-0.1
1,711,343	-				-1.6
1,711,343	-				+0.4
1,711,343	-				+1.2
1,711,343	-				-0.9
1,711,343	-				-0.6
1,711,343	-				-0.0
1,711,350	+				-1.7
1,711,404	-				+0.9
1,711,427	+				-1.6
1,711,427	+				-1.1
1,711,427	+				-2.2
1,711,429	+				+0.9
1,711,429	+				+1.2
1,711,435	-				-2.0
1,711,435	-				+0.8
1,711,437	-				+0.2
1,711,437	-				-1.0
1,711,446	+				-1.1
1,711,446	+				+1.6
1,711,454	-				-0.4
1,711,455	-				+0.9
1,711,460	+				-1.9
1,711,466	+				+0.0
1,711,466	+				-0.1
1,711,466	+				-2.1
1,711,466	+				+1.2
1,711,466	+				-1.2
1,711,466	+				-0.5
1,711,466	+				-1.2
1,711,466	+				+1.3
1,711,466	+				-1.5
1,711,466	+				-0.7
1,711,466	+				+1.0
1,711,466	+				-1.0
1,711,466	+				+0.4
1,711,466	+				-0.2
1,711,466	+				-1.1
1,711,471	+				-0.2
1,711,471	+				-0.5
1,711,474	-				-0.0
1,711,474	-				+0.1
1,711,474	-				-0.2
1,711,474	-				-2.3
1,711,474	-				-0.3
1,711,474	-				-1.2
1,711,474	-				-0.2
1,711,474	-				+0.2
1,711,474	-				-2.9
1,711,474	-				-0.6
1,711,474	-				-0.1
1,711,474	-				-1.5
1,711,474	-				-1.7
1,711,474	-				-1.2
1,711,474	-				-0.1
1,711,474	-				-0.6
1,711,474	-				-0.9
1,711,474	-				+0.4
1,711,476	+				-1.1
1,711,476	+				-0.3
1,711,479	-				-1.2
1,711,484	-				+1.0
1,711,499	+				-1.9
1,711,507	-				+0.5
1,711,525	-		GFF1685	0.12	-1.1
1,711,526	-		GFF1685	0.12	+1.2
1,711,569	-		GFF1685	0.20	-0.6
1,711,594	-		GFF1685	0.25	+0.2
1,711,608	+		GFF1685	0.27	+1.0
1,711,631	+		GFF1685	0.31	+0.3
1,711,636	+		GFF1685	0.32	+0.4
1,711,638	+		GFF1685	0.33	-1.1
1,711,639	-		GFF1685	0.33	-1.0
1,711,649	+		GFF1685	0.35	+1.2
1,711,657	-		GFF1685	0.36	-2.0
1,711,657	-		GFF1685	0.36	+0.7
1,711,682	+		GFF1685	0.41	-1.2
1,711,707	+		GFF1685	0.45	-0.5
1,711,713	+		GFF1685	0.46	-1.6
1,711,736	-		GFF1685	0.50	-2.2
1,711,750	-		GFF1685	0.53	-0.6
1,711,752	+		GFF1685	0.53	-1.3
1,711,757	+		GFF1685	0.54	-1.1
1,711,760	-		GFF1685	0.55	+0.9
1,711,765	-		GFF1685	0.56	-0.8
1,711,769	-		GFF1685	0.56	-2.1
1,711,769	-		GFF1685	0.56	+0.8
1,711,769	-		GFF1685	0.56	+0.9
1,711,785	+		GFF1685	0.59	+0.5
1,711,791	-		GFF1685	0.60	-1.2
1,711,795	+		GFF1685	0.61	+0.3
1,711,798	-		GFF1685	0.62	-0.9
1,711,814	-		GFF1685	0.65	-0.4
1,711,821	+		GFF1685	0.66	-0.8
1,711,863	+		GFF1685	0.74	-0.6
1,711,870	-		GFF1685	0.75	+0.8
1,711,871	-		GFF1685	0.75	-1.3
1,711,892	+		GFF1685	0.79	-0.3
1,711,900	-		GFF1685	0.80	-1.5
1,711,901	-		GFF1685	0.81	-2.3
1,711,908	-		GFF1685	0.82	-1.7
1,711,922	-		GFF1685	0.84	-1.0
1,711,968	+				-1.1
1,711,969	+				-2.0
1,711,970	+				-0.6
1,711,989	+				+0.2
1,711,997	-				-2.3
1,711,997	-				+0.7
1,711,997	-				+0.2
1,712,017	+				+0.2
1,712,017	-				+0.5
1,712,068	+				-0.4
1,712,076	-				-0.4
1,712,093	+				-0.7
1,712,108	-				+0.4
1,712,162	+				+0.7
1,712,162	-				-0.6
1,712,181	-				-0.6
1,712,245	-		GFF1686	0.22	-1.0
1,712,245	-		GFF1686	0.22	+0.4
1,712,250	-		GFF1686	0.23	+1.1
1,712,295	-		GFF1686	0.35	-0.5
1,712,301	-		GFF1686	0.37	-1.6