Strain Fitness in Sphingobium sp. HT1-2 around GFF1670

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,696,564	-		GFF1667	0.28	+0.9
1,696,569	-		GFF1667	0.28	+0.9
1,696,569	-		GFF1667	0.28	-1.0
1,696,574	-		GFF1667	0.29	-1.1
1,696,598	+		GFF1667	0.34	+0.3
1,696,606	-		GFF1667	0.35	-1.7
1,696,606	-		GFF1667	0.35	+0.2
1,696,665	+		GFF1667	0.46	+0.5
1,696,665	+		GFF1667	0.46	-1.6
1,696,673	-		GFF1667	0.48	+0.6
1,696,673	-		GFF1667	0.48	-0.6
1,696,673	-		GFF1667	0.48	-0.3
1,696,675	+		GFF1667	0.48	-1.2
1,696,675	+		GFF1667	0.48	-0.2
1,696,683	-		GFF1667	0.50	+0.3
1,696,683	-		GFF1667	0.50	-0.0
1,696,683	-		GFF1667	0.50	+1.2
1,696,683	-		GFF1667	0.50	-0.6
1,696,683	-		GFF1667	0.50	-1.1
1,696,683	-		GFF1667	0.50	-0.0
1,696,683	-		GFF1667	0.50	-1.2
1,696,685	+		GFF1667	0.50	-0.9
1,696,693	-		GFF1667	0.52	-2.0
1,696,733	-		GFF1667	0.59	+0.4
1,696,753	-		GFF1667	0.63	-0.9
1,696,761	-		GFF1667	0.64	-1.2
1,696,768	-		GFF1667	0.66	+0.2
1,696,772	+		GFF1667	0.66	-2.0
1,696,785	-		GFF1667	0.69	-0.5
1,696,796	+		GFF1667	0.71	+0.0
1,696,798	-		GFF1667	0.71	-0.9
1,696,804	-		GFF1667	0.72	-0.2
1,696,806	+		GFF1667	0.73	+1.2
1,696,829	+		GFF1667	0.77	-1.6
1,696,840	+		GFF1667	0.79	-2.3
1,696,848	-		GFF1667	0.81	-0.6
1,696,848	-		GFF1667	0.81	-0.6
1,696,859	+		GFF1667	0.83	-0.1
1,696,867	-		GFF1667	0.84	-2.3
1,696,867	-		GFF1667	0.84	-0.6
1,696,910	-				+0.2
1,696,912	+				-1.3
1,696,928	+				+1.6
1,696,930	+				-1.2
1,696,943	-				-1.2
1,696,943	-				-0.6
1,696,981	+		GFF1668	0.11	+0.5
1,697,004	+		GFF1668	0.17	-1.6
1,697,021	+		GFF1668	0.22	-1.4
1,697,030	+		GFF1668	0.24	-1.9
1,697,032	-		GFF1668	0.25	-2.8
1,697,066	+		GFF1668	0.33	-1.3
1,697,066	+		GFF1668	0.33	-1.0
1,697,068	+		GFF1668	0.34	-1.4
1,697,068	+		GFF1668	0.34	-1.2
1,697,071	+		GFF1668	0.35	-2.7
1,697,071	+		GFF1668	0.35	-1.0
1,697,071	+		GFF1668	0.35	-0.8
1,697,071	+		GFF1668	0.35	-1.1
1,697,076	+		GFF1668	0.36	-2.2
1,697,079	-		GFF1668	0.37	-1.2
1,697,079	-		GFF1668	0.37	-2.7
1,697,098	+		GFF1668	0.42	-1.9
1,697,098	+		GFF1668	0.42	-1.6
1,697,118	-		GFF1668	0.47	-2.1
1,697,125	-		GFF1668	0.49	-2.3
1,697,170	+		GFF1668	0.60	-0.9
1,697,170	+		GFF1668	0.60	-1.8
1,697,170	+		GFF1668	0.60	-1.1
1,697,173	-		GFF1668	0.61	-1.1
1,697,173	-		GFF1668	0.61	-1.2
1,697,173	-		GFF1668	0.61	-1.6
1,697,174	+		GFF1668	0.61	-0.7
1,697,178	-		GFF1668	0.62	-1.5
1,697,219	+		GFF1668	0.73	+0.0
1,697,227	+		GFF1668	0.75	-2.8
1,697,227	-		GFF1668	0.75	-1.2
1,697,227	-		GFF1668	0.75	-2.3
1,697,245	-		GFF1668	0.80	-1.8
1,697,245	-		GFF1668	0.80	-2.8
1,697,245	-		GFF1668	0.80	-2.6
1,697,252	-		GFF1668	0.81	-1.8
1,697,252	-		GFF1668	0.81	-1.2
1,697,254	-		GFF1668	0.82	-0.9
1,697,259	+		GFF1668	0.83	-2.5
1,697,261	+		GFF1668	0.84	-0.5
1,697,266	+		GFF1668	0.85	-1.7
1,697,273	-		GFF1668	0.87	-1.9
1,697,274	-		GFF1668	0.87	-1.4
1,697,274	-		GFF1668	0.87	-1.6
1,697,274	-		GFF1668	0.87	-2.0
1,697,275	-		GFF1668	0.87	-1.9
1,697,287	+				-0.7
1,697,295	-				-0.2
1,697,299	+				-1.2
1,697,299	+				-2.0
1,697,307	-				-1.5
1,697,307	-				-2.9
1,697,307	-				-2.6
1,697,316	+				-0.8
1,697,321	-				-0.5
1,697,333	+				-0.6
1,697,369	-				+0.4
1,697,381	+				-2.0
1,697,382	+				-0.4
1,697,396	+				+0.4
1,697,396	+				+0.9
1,697,404	+				-1.8
1,697,404	+				-0.7
1,697,405	+				-1.3
1,697,412	-				-1.2
1,697,460	+		GFF1669	0.13	-0.1
1,697,460	+		GFF1669	0.13	+0.9
1,697,461	+		GFF1669	0.14	-0.1
1,697,469	-		GFF1669	0.21	-0.5
1,697,470	+		GFF1669	0.21	+0.5
1,697,470	+		GFF1669	0.21	+0.3
1,697,480	-		GFF1669	0.30	-0.1
1,697,482	-		GFF1669	0.32	-0.6
1,697,505	+		GFF1669	0.51	-1.4
1,697,505	+		GFF1669	0.51	-0.1
1,697,513	-		GFF1669	0.58	+0.2
1,697,520	+		GFF1669	0.64	+0.6
1,697,546	-		GFF1669	0.86	+0.8
1,697,555	-				-1.1
1,697,579	+				-0.1
1,697,618	-				+1.9
1,697,633	-				-1.1
1,697,640	+				-1.7
1,697,643	-				-1.5
1,697,646	+				-0.4
1,697,648	-				-1.8
1,697,650	+				+0.1
1,697,650	+				+0.8
1,697,651	+				-1.0
1,697,651	+				+0.2
1,697,654	-				+0.4
1,697,658	-				-0.1
1,697,659	-				-1.6
1,697,692	-				-0.4
1,697,734	+				-0.8
1,697,746	-				+0.3
1,697,780	+				-0.1
1,697,780	+				-0.4
1,697,790	+				+0.5
1,697,796	+		GFF1670	0.10	-2.0
1,697,804	-		GFF1670	0.11	+0.6
1,697,809	+		GFF1670	0.11	+0.1
1,697,817	-		GFF1670	0.11	+0.5
1,697,817	-		GFF1670	0.11	-1.3
1,697,834	-		GFF1670	0.12	-0.3
1,697,847	-		GFF1670	0.12	-1.5
1,697,862	+		GFF1670	0.13	+0.8
1,697,862	-		GFF1670	0.13	-2.2
1,697,872	+		GFF1670	0.14	+0.4
1,697,874	+		GFF1670	0.14	+1.2
1,697,880	+		GFF1670	0.14	-1.0
1,697,968	+		GFF1670	0.18	-0.4
1,697,969	+		GFF1670	0.18	+1.4
1,697,969	+		GFF1670	0.18	+0.6
1,697,976	-		GFF1670	0.18	-0.5
1,697,976	-		GFF1670	0.18	-2.7
1,697,977	-		GFF1670	0.18	-1.6
1,697,985	-		GFF1670	0.18	-1.3
1,697,990	+		GFF1670	0.19	-0.3
1,698,000	+		GFF1670	0.19	+0.1
1,698,000	+		GFF1670	0.19	-1.0
1,698,025	+		GFF1670	0.20	-0.1
1,698,033	-		GFF1670	0.21	+0.1
1,698,062	+		GFF1670	0.22	+0.2
1,698,078	-		GFF1670	0.23	-1.3
1,698,115	+		GFF1670	0.24	+0.3
1,698,125	+		GFF1670	0.25	+1.8
1,698,125	+		GFF1670	0.25	+0.4
1,698,125	+		GFF1670	0.25	+0.2
1,698,125	+		GFF1670	0.25	-0.4
1,698,125	+		GFF1670	0.25	-0.7
1,698,126	+		GFF1670	0.25	+0.4
1,698,127	+		GFF1670	0.25	-1.7
1,698,127	+		GFF1670	0.25	+1.2
1,698,127	+		GFF1670	0.25	-0.5
1,698,127	+		GFF1670	0.25	-0.2
1,698,133	-		GFF1670	0.25	-0.2
1,698,133	-		GFF1670	0.25	+0.6
1,698,133	-		GFF1670	0.25	+0.7
1,698,133	-		GFF1670	0.25	+0.0
1,698,133	-		GFF1670	0.25	+0.8
1,698,133	-		GFF1670	0.25	+1.1
1,698,133	-		GFF1670	0.25	+0.2
1,698,133	-		GFF1670	0.25	+0.7
1,698,135	-		GFF1670	0.25	+0.3
1,698,135	-		GFF1670	0.25	-0.2
1,698,149	+		GFF1670	0.26	-0.9
1,698,177	+		GFF1670	0.27	-0.6
1,698,184	-		GFF1670	0.27	+0.2
1,698,185	-		GFF1670	0.27	+0.2
1,698,192	+		GFF1670	0.28	-0.9
1,698,197	+		GFF1670	0.28	-0.6
1,698,200	+		GFF1670	0.28	-1.1
1,698,200	-		GFF1670	0.28	-2.9
1,698,210	-		GFF1670	0.28	+0.6
1,698,234	+		GFF1670	0.29	+0.8
1,698,237	-		GFF1670	0.30	+0.2
1,698,239	+		GFF1670	0.30	-2.3
1,698,270	-		GFF1670	0.31	-0.4
1,698,283	+		GFF1670	0.32	+0.1
1,698,296	-		GFF1670	0.32	-0.8
1,698,296	-		GFF1670	0.32	-0.4
1,698,319	+		GFF1670	0.33	+0.8
1,698,319	+		GFF1670	0.33	-1.5
1,698,319	+		GFF1670	0.33	-1.3
1,698,319	+		GFF1670	0.33	-0.5
1,698,324	+		GFF1670	0.33	+0.1
1,698,327	-		GFF1670	0.34	-2.2
1,698,327	-		GFF1670	0.34	+0.8
1,698,327	-		GFF1670	0.34	-1.6
1,698,327	-		GFF1670	0.34	-0.6
1,698,327	-		GFF1670	0.34	-0.6
1,698,332	-		GFF1670	0.34	+0.2
1,698,337	-		GFF1670	0.34	+1.2
1,698,337	-		GFF1670	0.34	-0.3
1,698,342	-		GFF1670	0.34	-0.6
1,698,353	-		GFF1670	0.35	+0.4
1,698,361	-		GFF1670	0.35	-0.3
1,698,363	+		GFF1670	0.35	-1.7
1,698,387	+		GFF1670	0.36	-0.6
1,698,387	+		GFF1670	0.36	-0.3
1,698,387	-		GFF1670	0.36	-1.5
1,698,395	-		GFF1670	0.36	-2.0
1,698,405	-		GFF1670	0.37	-0.6
1,698,431	+		GFF1670	0.38	+1.3
1,698,439	-		GFF1670	0.38	+0.0
1,698,443	-		GFF1670	0.39	-0.0
1,698,443	-		GFF1670	0.39	-1.0
1,698,448	+		GFF1670	0.39	+0.9
1,698,448	+		GFF1670	0.39	-0.5
1,698,450	+		GFF1670	0.39	+0.4
1,698,457	-		GFF1670	0.39	-0.2
1,698,457	-		GFF1670	0.39	+0.3
1,698,457	-		GFF1670	0.39	+1.2
1,698,490	+		GFF1670	0.41	-0.3
1,698,499	+		GFF1670	0.41	-0.5
1,698,499	+		GFF1670	0.41	+0.7
1,698,499	+		GFF1670	0.41	+0.4
1,698,507	-		GFF1670	0.41	-2.6
1,698,507	-		GFF1670	0.41	-0.6
1,698,507	-		GFF1670	0.41	+0.5
1,698,522	+		GFF1670	0.42	+1.6
1,698,522	-		GFF1670	0.42	-1.6
1,698,530	-		GFF1670	0.42	-1.2
1,698,533	+		GFF1670	0.43	-0.6
1,698,545	+		GFF1670	0.43	+0.3
1,698,550	+		GFF1670	0.43	-0.1
1,698,550	+		GFF1670	0.43	-2.0
1,698,595	+		GFF1670	0.45	+0.3
1,698,595	+		GFF1670	0.45	-1.9
1,698,595	+		GFF1670	0.45	-1.5
1,698,595	+		GFF1670	0.45	+0.5
1,698,595	+		GFF1670	0.45	+0.1
1,698,595	+		GFF1670	0.45	-1.1
1,698,603	-		GFF1670	0.46	-1.8
1,698,603	-		GFF1670	0.46	-0.5
1,698,612	+		GFF1670	0.46	+0.0
1,698,620	-		GFF1670	0.46	+0.6
1,698,622	+		GFF1670	0.46	+1.2
1,698,625	-		GFF1670	0.47	-0.3
1,698,666	+		GFF1670	0.48	-2.1
1,698,666	+		GFF1670	0.48	-1.5
1,698,669	-		GFF1670	0.49	-0.0
1,698,674	-		GFF1670	0.49	-0.3
1,698,717	+		GFF1670	0.51	+0.5
1,698,725	-		GFF1670	0.51	+0.4
1,698,804	+		GFF1670	0.54	-0.5
1,698,804	-		GFF1670	0.54	-0.8
1,698,809	+		GFF1670	0.55	-0.1
1,698,862	-		GFF1670	0.57	+0.0
1,698,862	-		GFF1670	0.57	+1.5
1,698,864	+		GFF1670	0.57	-0.6
1,698,873	-		GFF1670	0.57	-2.1
1,698,878	-		GFF1670	0.58	+1.1
1,698,884	-		GFF1670	0.58	-0.1
1,698,971	+		GFF1670	0.62	+0.2
1,698,974	-		GFF1670	0.62	+0.3
1,698,981	+		GFF1670	0.62	-0.8
1,698,984	-		GFF1670	0.62	-1.1
1,698,984	-		GFF1670	0.62	-3.0
1,698,984	-		GFF1670	0.62	+1.1
1,698,989	-		GFF1670	0.63	+0.5
1,698,997	+		GFF1670	0.63	-0.7
1,698,997	+		GFF1670	0.63	+0.2
1,698,997	+		GFF1670	0.63	+0.5
1,698,997	+		GFF1670	0.63	-0.8
1,698,997	+		GFF1670	0.63	-0.5
1,698,997	+		GFF1670	0.63	-0.8
1,698,997	+		GFF1670	0.63	+0.2
1,698,997	-		GFF1670	0.63	+1.9
1,699,005	-		GFF1670	0.63	-1.0
1,699,005	-		GFF1670	0.63	+0.2
1,699,005	-		GFF1670	0.63	-0.9
1,699,005	-		GFF1670	0.63	+1.1
1,699,005	-		GFF1670	0.63	-0.6
1,699,005	-		GFF1670	0.63	-0.9
1,699,005	-		GFF1670	0.63	+0.4
1,699,010	-		GFF1670	0.64	-1.0
1,699,012	+		GFF1670	0.64	+0.1
1,699,015	-		GFF1670	0.64	+0.1
1,699,015	-		GFF1670	0.64	-1.5
1,699,020	-		GFF1670	0.64	+0.5
1,699,020	-		GFF1670	0.64	-1.2
1,699,022	-		GFF1670	0.64	-1.2
1,699,024	+		GFF1670	0.64	-1.5
1,699,024	+		GFF1670	0.64	-0.4
1,699,024	+		GFF1670	0.64	-1.5
1,699,024	+		GFF1670	0.64	+0.0
1,699,026	+		GFF1670	0.64	-0.5
1,699,032	-		GFF1670	0.64	+0.4
1,699,032	-		GFF1670	0.64	-1.9
1,699,032	-		GFF1670	0.64	+0.9
1,699,032	-		GFF1670	0.64	-2.0
1,699,052	-		GFF1670	0.65	-1.2
1,699,056	+		GFF1670	0.66	+0.4
1,699,056	+		GFF1670	0.66	+0.4
1,699,056	+		GFF1670	0.66	+0.0
1,699,056	+		GFF1670	0.66	-2.7
1,699,061	+		GFF1670	0.66	+0.7
1,699,062	+		GFF1670	0.66	-1.4
1,699,062	-		GFF1670	0.66	-0.6
1,699,064	-		GFF1670	0.66	-0.0
1,699,064	-		GFF1670	0.66	-2.7
1,699,072	-		GFF1670	0.66	+0.0
1,699,109	+		GFF1670	0.68	+0.9
1,699,117	-		GFF1670	0.68	+0.4
1,699,118	+		GFF1670	0.68	-2.2
1,699,126	+		GFF1670	0.69	-0.0
1,699,126	-		GFF1670	0.69	+0.2
1,699,161	+		GFF1670	0.70	+1.1
1,699,212	+		GFF1670	0.72	-0.4
1,699,212	+		GFF1670	0.72	-0.8
1,699,226	+		GFF1670	0.73	+0.4
1,699,289	+		GFF1670	0.76	-1.5
1,699,303	+		GFF1670	0.76	-0.0
1,699,311	-		GFF1670	0.77	-1.1
1,699,317	+		GFF1670	0.77	-0.3
1,699,335	+		GFF1670	0.78	-1.5
1,699,359	+		GFF1670	0.79	-0.9
1,699,359	+		GFF1670	0.79	-1.5
1,699,359	+		GFF1670	0.79	+0.8
1,699,365	+		GFF1670	0.79	-0.0
1,699,368	-		GFF1670	0.79	-0.2
1,699,382	+		GFF1670	0.80	+0.5
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