Strain Fitness in Sphingobium sp. HT1-2 around GFF1657

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,682,959	-		GFF1656	0.20	-1.1
1,682,990	-		GFF1656	0.22	+0.7
1,682,997	-		GFF1656	0.23	-1.7
1,683,015	+		GFF1656	0.24	-0.1
1,683,020	+		GFF1656	0.25	-1.5
1,683,020	+		GFF1656	0.25	-1.0
1,683,044	+		GFF1656	0.27	-1.2
1,683,044	+		GFF1656	0.27	-1.1
1,683,046	+		GFF1656	0.27	+0.3
1,683,055	+		GFF1656	0.28	+0.5
1,683,055	+		GFF1656	0.28	-0.5
1,683,060	+		GFF1656	0.28	+0.8
1,683,061	-		GFF1656	0.28	+0.4
1,683,063	-		GFF1656	0.28	-1.8
1,683,063	-		GFF1656	0.28	-1.7
1,683,063	-		GFF1656	0.28	-1.3
1,683,065	+		GFF1656	0.28	+0.5
1,683,066	+		GFF1656	0.28	-0.3
1,683,073	-		GFF1656	0.29	-2.5
1,683,074	-		GFF1656	0.29	-0.6
1,683,074	-		GFF1656	0.29	-1.8
1,683,074	-		GFF1656	0.29	-0.8
1,683,074	-		GFF1656	0.29	-0.7
1,683,074	-		GFF1656	0.29	+0.1
1,683,074	-		GFF1656	0.29	-1.3
1,683,074	-		GFF1656	0.29	+1.2
1,683,082	+		GFF1656	0.30	-1.8
1,683,082	+		GFF1656	0.30	+1.0
1,683,082	+		GFF1656	0.30	-1.2
1,683,082	+		GFF1656	0.30	-0.2
1,683,090	-		GFF1656	0.30	+1.0
1,683,090	-		GFF1656	0.30	-0.6
1,683,094	+		GFF1656	0.31	+0.0
1,683,133	+		GFF1656	0.34	-0.5
1,683,137	+		GFF1656	0.34	+0.6
1,683,137	+		GFF1656	0.34	-0.2
1,683,137	+		GFF1656	0.34	-1.1
1,683,137	+		GFF1656	0.34	-0.0
1,683,141	-		GFF1656	0.34	-0.4
1,683,145	-		GFF1656	0.35	-1.5
1,683,145	-		GFF1656	0.35	-0.6
1,683,145	-		GFF1656	0.35	-0.1
1,683,156	+		GFF1656	0.36	-0.9
1,683,156	+		GFF1656	0.36	+0.4
1,683,187	-		GFF1656	0.38	+0.2
1,683,197	-		GFF1656	0.39	+0.0
1,683,207	-		GFF1656	0.40	-1.1
1,683,207	-		GFF1656	0.40	-2.7
1,683,238	+		GFF1656	0.42	-0.1
1,683,244	+		GFF1656	0.43	+0.2
1,683,252	-		GFF1656	0.43	-0.5
1,683,275	+		GFF1656	0.45	+1.3
1,683,275	+		GFF1656	0.45	+0.0
1,683,282	+		GFF1656	0.46	-1.3
1,683,282	+		GFF1656	0.46	-0.4
1,683,282	+		GFF1656	0.46	-1.2
1,683,284	+		GFF1656	0.46	+0.3
1,683,290	-		GFF1656	0.46	+0.2
1,683,290	-		GFF1656	0.46	-1.2
1,683,290	-		GFF1656	0.46	-1.2
1,683,290	-		GFF1656	0.46	+0.2
1,683,304	+		GFF1656	0.47	+1.5
1,683,304	+		GFF1656	0.47	-0.1
1,683,319	-		GFF1656	0.48	-0.4
1,683,321	+		GFF1656	0.49	-0.3
1,683,321	+		GFF1656	0.49	-0.9
1,683,321	+		GFF1656	0.49	-1.1
1,683,328	+		GFF1656	0.49	+0.5
1,683,338	+		GFF1656	0.50	-0.1
1,683,347	-		GFF1656	0.51	-2.2
1,683,351	-		GFF1656	0.51	-0.3
1,683,375	+		GFF1656	0.53	-2.0
1,683,375	+		GFF1656	0.53	-1.3
1,683,375	-		GFF1656	0.53	-0.4
1,683,381	-		GFF1656	0.53	-0.9
1,683,385	+		GFF1656	0.54	-1.2
1,683,385	+		GFF1656	0.54	+0.3
1,683,402	+		GFF1656	0.55	+1.6
1,683,416	+		GFF1656	0.56	-1.4
1,683,433	-		GFF1656	0.58	-0.9
1,683,436	+		GFF1656	0.58	-0.6
1,683,445	+		GFF1656	0.58	-1.0
1,683,450	+		GFF1656	0.59	-0.2
1,683,473	-		GFF1656	0.61	+0.3
1,683,473	-		GFF1656	0.61	+0.0
1,683,473	-		GFF1656	0.61	-0.5
1,683,473	-		GFF1656	0.61	+0.2
1,683,473	-		GFF1656	0.61	+0.5
1,683,473	-		GFF1656	0.61	+1.2
1,683,489	-		GFF1656	0.62	+0.2
1,683,502	+		GFF1656	0.63	+0.8
1,683,502	+		GFF1656	0.63	+0.3
1,683,502	+		GFF1656	0.63	-1.0
1,683,510	-		GFF1656	0.64	+1.2
1,683,523	+		GFF1656	0.65	+0.3
1,683,524	+		GFF1656	0.65	+0.3
1,683,524	+		GFF1656	0.65	+0.1
1,683,524	+		GFF1656	0.65	-0.0
1,683,530	+		GFF1656	0.65	+0.4
1,683,531	-		GFF1656	0.65	-0.4
1,683,532	-		GFF1656	0.65	-0.5
1,683,559	+		GFF1656	0.68	-0.4
1,683,567	-		GFF1656	0.68	-1.1
1,683,572	+		GFF1656	0.69	-0.9
1,683,580	-		GFF1656	0.69	+0.8
1,683,588	+		GFF1656	0.70	-1.5
1,683,588	+		GFF1656	0.70	+0.9
1,683,624	+		GFF1656	0.73	+0.2
1,683,632	-		GFF1656	0.73	+0.9
1,683,653	+		GFF1656	0.75	+0.3
1,683,653	-		GFF1656	0.75	+0.1
1,683,653	-		GFF1656	0.75	-1.1
1,683,661	-		GFF1656	0.76	+1.2
1,683,666	+		GFF1656	0.76	+0.4
1,683,683	-		GFF1656	0.77	+0.6
1,683,688	-		GFF1656	0.78	+0.8
1,683,733	-		GFF1656	0.81	-0.7
1,683,765	+		GFF1656	0.84	+1.1
1,683,773	-		GFF1656	0.85	+0.3
1,683,773	-		GFF1656	0.85	+1.2
1,683,777	+		GFF1656	0.85	-1.2
1,683,835	+		GFF1656	0.89	-0.3
1,683,835	+		GFF1656	0.89	-1.4
1,683,835	+		GFF1656	0.89	-0.7
1,683,843	-				+1.2
1,683,843	-				-1.0
1,683,873	+				+1.1
1,683,881	-				+0.3
1,683,881	-				+0.7
1,683,892	+				-0.6
1,683,892	+				-1.9
1,683,897	+				-0.5
1,683,897	+				+0.3
1,683,897	+				-0.3
1,683,897	+				+0.5
1,683,897	+				+1.0
1,683,897	+				-0.8
1,683,897	+				+0.1
1,683,897	+				+0.8
1,683,900	-				-0.8
1,683,900	-				+0.6
1,683,900	-				-0.5
1,683,902	+				-1.2
1,683,905	-				-1.1
1,683,905	-				+0.1
1,683,905	-				-0.1
1,683,905	-				-0.4
1,683,905	-				-3.0
1,683,905	-				+0.3
1,683,905	-				-1.8
1,683,907	+				+0.5
1,683,907	+				-1.2
1,683,907	+				-1.6
1,683,910	-				-1.2
1,683,910	-				-1.1
1,683,910	-				+0.1
1,683,910	-				-0.2
1,683,915	-				-0.4
1,683,920	-				+1.2
1,683,938	-				-0.7
1,683,957	+				+0.0
1,683,957	+				-1.1
1,683,960	-				-0.7
1,683,965	-				+0.8
1,683,965	-				+0.7
1,683,971	+				-2.0
1,683,984	-				+0.1
1,683,989	-				-1.9
1,683,989	-				-0.7
1,684,001	-				+0.1
1,684,010	+				-0.7
1,684,010	+				+0.2
1,684,015	+				+0.9
1,684,023	-		GFF1657	0.11	-1.7
1,684,026	-		GFF1657	0.11	+1.9
1,684,027	+		GFF1657	0.12	-0.2
1,684,086	-		GFF1657	0.21	+0.4
1,684,100	-		GFF1657	0.23	-1.5
1,684,111	+		GFF1657	0.25	+0.3
1,684,127	-		GFF1657	0.28	+1.0
1,684,164	-		GFF1657	0.33	-1.4
1,684,167	+		GFF1657	0.34	-1.8
1,684,167	+		GFF1657	0.34	+0.1
1,684,175	-		GFF1657	0.35	+0.8
1,684,179	+		GFF1657	0.36	-0.4
1,684,187	-		GFF1657	0.37	-1.5
1,684,188	+		GFF1657	0.37	-0.3
1,684,188	+		GFF1657	0.37	-0.5
1,684,188	+		GFF1657	0.37	+0.6
1,684,188	+		GFF1657	0.37	-1.6
1,684,188	+		GFF1657	0.37	-1.5
1,684,188	+		GFF1657	0.37	-0.3
1,684,188	+		GFF1657	0.37	-0.6
1,684,188	+		GFF1657	0.37	+1.1
1,684,188	+		GFF1657	0.37	-0.3
1,684,188	+		GFF1657	0.37	+1.4
1,684,188	+		GFF1657	0.37	-1.3
1,684,188	+		GFF1657	0.37	+0.5
1,684,188	+		GFF1657	0.37	-1.9
1,684,188	+		GFF1657	0.37	-0.3
1,684,188	+		GFF1657	0.37	+0.9
1,684,196	-		GFF1657	0.39	-0.1
1,684,196	-		GFF1657	0.39	+0.9
1,684,196	-		GFF1657	0.39	-2.7
1,684,196	-		GFF1657	0.39	-2.4
1,684,196	-		GFF1657	0.39	-0.3
1,684,196	-		GFF1657	0.39	-0.4
1,684,196	-		GFF1657	0.39	+0.6
1,684,196	-		GFF1657	0.39	+0.5
1,684,196	-		GFF1657	0.39	-0.3
1,684,196	-		GFF1657	0.39	-0.8
1,684,196	-		GFF1657	0.39	+0.7
1,684,223	+		GFF1657	0.43	-1.1
1,684,223	+		GFF1657	0.43	+1.3
1,684,231	-		GFF1657	0.44	+0.6
1,684,231	-		GFF1657	0.44	-1.1
1,684,279	+		GFF1657	0.52	-0.1
1,684,287	-		GFF1657	0.53	+0.0
1,684,287	-		GFF1657	0.53	-0.2
1,684,287	-		GFF1657	0.53	-0.4
1,684,313	-		GFF1657	0.57	-0.6
1,684,338	+		GFF1657	0.61	-0.0
1,684,357	+		GFF1657	0.64	-0.5
1,684,376	+		GFF1657	0.67	-0.2
1,684,381	+		GFF1657	0.68	+0.8
1,684,391	+		GFF1657	0.70	-0.0
1,684,391	+		GFF1657	0.70	-2.6
1,684,391	+		GFF1657	0.70	-1.5
1,684,399	-		GFF1657	0.71	-0.0
1,684,399	-		GFF1657	0.71	-1.2
1,684,413	-		GFF1657	0.73	-1.2
1,684,413	-		GFF1657	0.73	+1.4
1,684,433	+		GFF1657	0.76	-0.1
1,684,441	-		GFF1657	0.78	+1.2
1,684,443	+		GFF1657	0.78	+0.5
1,684,443	+		GFF1657	0.78	+0.5
1,684,443	+		GFF1657	0.78	+0.4
1,684,443	+		GFF1657	0.78	-1.3
1,684,448	+		GFF1657	0.79	-1.2
1,684,448	+		GFF1657	0.79	+0.3
1,684,448	+		GFF1657	0.79	-1.5
1,684,451	-		GFF1657	0.79	+0.9
1,684,451	-		GFF1657	0.79	-0.0
1,684,451	-		GFF1657	0.79	-1.0
1,684,456	-		GFF1657	0.80	-2.7
1,684,476	+		GFF1657	0.83	-0.0
1,684,476	+		GFF1657	0.83	+0.0
1,684,476	+		GFF1657	0.83	+0.8
1,684,481	+		GFF1657	0.84	-0.2
1,684,496	+		GFF1657	0.86	+1.1
1,684,498	+		GFF1657	0.87	+0.2
1,684,498	+		GFF1657	0.87	-1.9
1,684,498	+		GFF1657	0.87	-1.8
1,684,498	+		GFF1657	0.87	+0.6
1,684,504	-		GFF1657	0.88	-1.2
1,684,504	-		GFF1657	0.88	+0.3
1,684,506	-		GFF1657	0.88	+0.2
1,684,506	-		GFF1657	0.88	-1.5
1,684,506	-		GFF1657	0.88	-1.4
1,684,534	-				+0.1
1,684,539	-				-1.8
1,684,549	+				+0.2
1,684,562	-				+0.3
1,684,567	-				+1.3
1,684,576	-				-0.3
1,684,587	+				-2.3
1,684,588	+				-0.2
1,684,590	+				+0.3
1,684,596	-				-1.5
1,684,596	-				+1.3
1,684,596	-				+0.6
1,684,596	-				-0.4
1,684,598	-				+0.1
1,684,598	-				-0.8
1,684,600	+				+1.7
1,684,605	+				-0.2
1,684,608	-				-0.2
1,684,611	+				+0.6
1,684,619	-				-0.2
1,684,619	-				-0.0
1,684,619	-				-0.5
1,684,619	-				+0.5
1,684,621	+				-0.7
1,684,623	+				+0.6
1,684,625	+				+0.1
1,684,629	-				-0.6
1,684,644	+				+0.0
1,684,653	+				+1.3
1,684,653	+				-0.1
1,684,655	+				-0.1
1,684,661	-				-2.0
1,684,661	-				-0.3
1,684,663	-				-1.1
1,684,663	-				-0.1
1,684,665	+				-1.3
1,684,673	-				-0.2
1,684,673	-				+0.0
1,684,692	+				+0.0
1,684,710	+				-1.1
1,684,716	+				+0.6
1,684,716	+				+0.0
1,684,717	-				-0.6
1,684,718	-				+0.6
1,684,724	-				+1.2
1,684,724	-				-0.4
1,684,724	-				-0.2
1,684,724	-				+1.0
1,684,726	+				-0.8
1,684,734	+				-0.2
1,684,734	-				-1.3
1,684,742	-				-0.2
1,684,771	+				+0.2
1,684,772	+				-0.2
1,684,772	+				+0.3
1,684,780	-				+1.6
1,684,780	-				-0.2
1,684,791	-				-0.9
1,684,799	-				-0.2
1,684,801	-				-0.2
1,684,820	+				-0.1
1,684,823	-				+0.9
1,684,823	-				-1.5
1,684,823	-				-2.4
1,684,823	-				-0.3
1,684,823	-				-1.4
1,684,828	-				+0.5
1,684,833	+				-1.1
1,684,833	+				+1.2
1,684,843	+				-0.7
1,684,845	+				+0.9
1,684,850	+				-0.7
1,684,850	+				-1.5
1,684,860	+		GFF1658	0.10	+0.2
1,684,860	+		GFF1658	0.10	-2.9
1,684,867	-		GFF1658	0.10	-0.4
1,684,868	-		GFF1658	0.10	+0.9
1,684,868	-		GFF1658	0.10	-1.1
1,684,868	-		GFF1658	0.10	-0.3
1,684,870	+		GFF1658	0.11	-0.3
1,684,870	+		GFF1658	0.11	-2.0
1,684,870	+		GFF1658	0.11	-0.4
1,684,870	+		GFF1658	0.11	+0.6
1,684,878	+		GFF1658	0.11	-3.1
1,684,878	+		GFF1658	0.11	-0.4
1,684,878	+		GFF1658	0.11	+0.7
1,684,878	-		GFF1658	0.11	-1.2
1,684,878	-		GFF1658	0.11	-0.1
1,684,878	-		GFF1658	0.11	-1.7
1,684,878	-		GFF1658	0.11	-1.6
1,684,878	-		GFF1658	0.11	-1.5
1,684,886	-		GFF1658	0.11	+0.6
1,684,886	-		GFF1658	0.11	-0.7
1,684,888	-		GFF1658	0.11	-0.7
1,684,897	-		GFF1658	0.12	-1.2
1,684,905	+		GFF1658	0.12	-0.5
1,684,905	+		GFF1658	0.12	-0.7
1,684,905	+		GFF1658	0.12	+0.7
1,684,905	+		GFF1658	0.12	-0.6
1,684,913	-		GFF1658	0.13	+0.4
1,684,913	-		GFF1658	0.13	-0.1
1,684,913	-		GFF1658	0.13	+0.3
1,684,913	-		GFF1658	0.13	-1.4
1,684,932	+		GFF1658	0.14	+0.0
1,684,938	-		GFF1658	0.14	+0.1
1,684,940	-		GFF1658	0.14	-1.0
1,684,959	-		GFF1658	0.15	-0.0
1,684,967	+		GFF1658	0.15	+0.3
1,684,967	+		GFF1658	0.15	+1.7
1,684,967	+		GFF1658	0.15	-1.4
1,684,975	+		GFF1658	0.16	-0.6
1,684,975	+		GFF1658	0.16	-2.2
1,684,975	+		GFF1658	0.16	-0.2
1,684,975	+		GFF1658	0.16	-1.1
1,684,975	+		GFF1658	0.16	-2.0
1,684,975	+		GFF1658	0.16	-1.1
1,684,975	+		GFF1658	0.16	-1.0
1,684,983	-		GFF1658	0.16	-0.7
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1,685,496	+		GFF1658	0.40	-2.1
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