Strain Fitness in Sphingobium sp. HT1-2 around GFF1655

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,678,837	+		GFF1653	0.29	-0.2
1,678,837	+		GFF1653	0.29	+0.2
1,678,841	+		GFF1653	0.29	-1.4
1,678,847	+		GFF1653	0.31	-1.5
1,678,848	+		GFF1653	0.31	-0.8
1,678,855	-		GFF1653	0.32	-1.4
1,678,862	+		GFF1653	0.34	+0.3
1,678,870	-		GFF1653	0.35	-1.7
1,678,896	+		GFF1653	0.40	-0.7
1,678,921	+		GFF1653	0.45	-0.8
1,678,921	+		GFF1653	0.45	+0.4
1,678,921	+		GFF1653	0.45	+0.3
1,678,929	-		GFF1653	0.47	-0.2
1,678,929	-		GFF1653	0.47	-1.1
1,678,929	-		GFF1653	0.47	+0.4
1,678,929	-		GFF1653	0.47	-0.5
1,678,929	-		GFF1653	0.47	+0.3
1,678,929	-		GFF1653	0.47	-1.2
1,678,929	-		GFF1653	0.47	-0.9
1,678,929	-		GFF1653	0.47	-0.2
1,678,929	-		GFF1653	0.47	-0.7
1,678,929	-		GFF1653	0.47	+0.5
1,678,929	-		GFF1653	0.47	+0.0
1,678,931	-		GFF1653	0.47	-1.5
1,678,938	+		GFF1653	0.49	+1.7
1,678,946	-		GFF1653	0.50	-0.5
1,678,946	-		GFF1653	0.50	-1.7
1,678,946	-		GFF1653	0.50	-0.6
1,678,961	+		GFF1653	0.53	+0.5
1,678,989	+		GFF1653	0.59	-0.1
1,678,991	+		GFF1653	0.59	-0.3
1,679,002	+		GFF1653	0.61	+0.1
1,679,057	-		GFF1653	0.72	+0.6
1,679,057	-		GFF1653	0.72	+1.5
1,679,057	-		GFF1653	0.72	-1.2
1,679,069	+		GFF1653	0.74	+0.7
1,679,083	-		GFF1653	0.77	-2.5
1,679,096	+		GFF1653	0.80	-2.4
1,679,104	-		GFF1653	0.81	-0.0
1,679,104	-		GFF1653	0.81	-0.4
1,679,104	-		GFF1653	0.81	-1.1
1,679,104	-		GFF1653	0.81	+0.8
1,679,114	-		GFF1653	0.83	-0.2
1,679,161	+				+0.1
1,679,161	+				-0.3
1,679,161	+				+0.5
1,679,161	+				-1.2
1,679,161	+				-2.2
1,679,161	+				-1.7
1,679,161	+				-1.2
1,679,161	+				+0.3
1,679,161	+				-0.6
1,679,161	+				+0.9
1,679,169	-				-0.4
1,679,169	-				-1.2
1,679,169	-				-1.7
1,679,169	-				+0.0
1,679,169	-				-0.2
1,679,169	-				-0.1
1,679,169	-				-0.6
1,679,169	-				-0.4
1,679,169	-				+0.3
1,679,169	-				-1.6
1,679,169	-				-0.8
1,679,169	-				+0.5
1,679,169	-				-0.0
1,679,193	+				+0.3
1,679,218	+				-0.3
1,679,218	+				-0.4
1,679,239	+				-2.4
1,679,247	-				+0.3
1,679,248	+				-1.1
1,679,248	+				-0.9
1,679,251	-				-1.6
1,679,278	+				+0.2
1,679,293	-				+0.8
1,679,298	+		GFF1654	0.10	-2.6
1,679,298	+		GFF1654	0.10	+0.4
1,679,306	-		GFF1654	0.12	-1.5
1,679,314	+		GFF1654	0.13	-0.1
1,679,329	-		GFF1654	0.16	-0.8
1,679,332	+		GFF1654	0.16	+1.5
1,679,332	-		GFF1654	0.16	+0.0
1,679,332	-		GFF1654	0.16	+0.2
1,679,348	-		GFF1654	0.19	-0.3
1,679,349	+		GFF1654	0.19	+0.2
1,679,356	+		GFF1654	0.21	+0.7
1,679,356	+		GFF1654	0.21	+1.3
1,679,357	-		GFF1654	0.21	+0.5
1,679,364	-		GFF1654	0.22	+0.4
1,679,378	+		GFF1654	0.25	-1.7
1,679,379	+		GFF1654	0.25	+0.1
1,679,399	+		GFF1654	0.28	-0.7
1,679,407	-		GFF1654	0.30	+0.5
1,679,407	-		GFF1654	0.30	-2.8
1,679,428	-		GFF1654	0.34	-1.2
1,679,445	+		GFF1654	0.37	-0.0
1,679,453	-		GFF1654	0.38	-2.5
1,679,455	+		GFF1654	0.39	-0.1
1,679,459	+		GFF1654	0.39	+1.0
1,679,464	+		GFF1654	0.40	-0.5
1,679,467	-		GFF1654	0.41	-0.1
1,679,480	+		GFF1654	0.43	-1.8
1,679,485	+		GFF1654	0.44	-0.5
1,679,485	+		GFF1654	0.44	+2.0
1,679,485	+		GFF1654	0.44	+0.6
1,679,490	+		GFF1654	0.45	-1.5
1,679,490	+		GFF1654	0.45	-0.5
1,679,490	+		GFF1654	0.45	-0.3
1,679,490	+		GFF1654	0.45	-0.4
1,679,490	+		GFF1654	0.45	-1.2
1,679,490	+		GFF1654	0.45	+0.3
1,679,490	+		GFF1654	0.45	-0.2
1,679,493	-		GFF1654	0.45	-0.7
1,679,498	-		GFF1654	0.46	-0.4
1,679,498	-		GFF1654	0.46	-0.2
1,679,504	+		GFF1654	0.47	-0.7
1,679,539	-		GFF1654	0.54	-0.5
1,679,550	+		GFF1654	0.56	+0.5
1,679,562	+		GFF1654	0.58	+2.2
1,679,563	+		GFF1654	0.58	-1.7
1,679,568	-		GFF1654	0.59	-0.2
1,679,583	+		GFF1654	0.62	-0.5
1,679,590	-		GFF1654	0.63	-0.1
1,679,597	+		GFF1654	0.64	-1.5
1,679,607	+		GFF1654	0.66	-0.6
1,679,676	-		GFF1654	0.78	+0.1
1,679,706	-		GFF1654	0.84	-0.7
1,679,717	+		GFF1654	0.86	-1.0
1,679,719	+		GFF1654	0.86	+0.4
1,679,742	-				-1.7
1,679,749	+				+0.5
1,679,760	+				-1.2
1,679,774	+				-0.0
1,679,780	+				+0.0
1,679,792	+				+0.2
1,679,800	-				-1.9
1,679,834	+				+0.5
1,679,839	+				-1.1
1,679,847	-				-1.1
1,682,538	-				-0.1
1,682,557	-				+0.0
1,682,557	-				-1.7
1,682,557	-				+0.7
1,682,562	-				-1.0
1,682,589	+				-1.0
1,682,615	+				+0.2
1,682,615	+				+0.1
1,682,623	+				-0.4
1,682,623	+				-0.2
1,682,623	+				-0.5
1,682,623	-				+0.2
1,682,631	-				+0.2
1,682,652	-				+0.1
1,682,661	+				-0.9
1,682,670	+				+0.8
1,682,684	+				+0.2
1,682,705	+				-0.0
1,682,712	-				-0.1
1,682,712	-				+0.4
1,682,713	-				+0.7
1,682,713	-				-1.8
1,682,713	-				-1.6
1,682,730	-				+0.8
1,682,735	-				-2.4
1,682,764	+				-1.7
1,682,773	+				-0.1
1,682,793	+				+0.1
1,682,797	+				-0.4
1,682,797	+				+0.3
1,682,813	-				-1.8
1,682,823	-				+0.1
1,682,840	+		GFF1656	0.10	-2.2
1,682,851	+		GFF1656	0.11	-2.0
1,682,865	-		GFF1656	0.12	-0.9
1,682,874	-		GFF1656	0.13	-0.7
1,682,875	+		GFF1656	0.13	-0.2
1,682,883	-		GFF1656	0.14	-1.1
1,682,888	-		GFF1656	0.14	+0.0
1,682,889	+		GFF1656	0.14	+0.4
1,682,889	+		GFF1656	0.14	-1.8
1,682,890	+		GFF1656	0.14	-0.3
1,682,890	+		GFF1656	0.14	-1.1
1,682,898	-		GFF1656	0.15	-0.1
1,682,898	-		GFF1656	0.15	+1.1
1,682,899	+		GFF1656	0.15	+0.0
1,682,907	-		GFF1656	0.16	+0.0
1,682,919	-		GFF1656	0.17	+0.9
1,682,920	-		GFF1656	0.17	-1.7
1,682,922	+		GFF1656	0.17	-0.8
1,682,925	+		GFF1656	0.17	+0.9
1,682,929	+		GFF1656	0.18	-0.7
1,682,937	-		GFF1656	0.18	-1.3
1,682,952	-		GFF1656	0.19	-0.8
1,682,952	-		GFF1656	0.19	-0.5
1,682,959	-		GFF1656	0.20	-1.1
1,682,990	-		GFF1656	0.22	+0.7
1,682,997	-		GFF1656	0.23	-1.7
1,683,015	+		GFF1656	0.24	-0.1
1,683,020	+		GFF1656	0.25	-1.5
1,683,020	+		GFF1656	0.25	-1.0
1,683,044	+		GFF1656	0.27	-1.2
1,683,044	+		GFF1656	0.27	-1.1
1,683,046	+		GFF1656	0.27	+0.3
1,683,055	+		GFF1656	0.28	+0.5
1,683,055	+		GFF1656	0.28	-0.5
1,683,060	+		GFF1656	0.28	+0.8
1,683,061	-		GFF1656	0.28	+0.4
1,683,063	-		GFF1656	0.28	-1.8
1,683,063	-		GFF1656	0.28	-1.7
1,683,063	-		GFF1656	0.28	-1.3
1,683,065	+		GFF1656	0.28	+0.5
1,683,066	+		GFF1656	0.28	-0.3
1,683,073	-		GFF1656	0.29	-2.5
1,683,074	-		GFF1656	0.29	-0.6
1,683,074	-		GFF1656	0.29	-1.8
1,683,074	-		GFF1656	0.29	-0.8
1,683,074	-		GFF1656	0.29	-0.7
1,683,074	-		GFF1656	0.29	+0.1
1,683,074	-		GFF1656	0.29	-1.3
1,683,074	-		GFF1656	0.29	+1.2
1,683,082	+		GFF1656	0.30	-1.8
1,683,082	+		GFF1656	0.30	+1.0
1,683,082	+		GFF1656	0.30	-1.2
1,683,082	+		GFF1656	0.30	-0.2
1,683,090	-		GFF1656	0.30	+1.0
1,683,090	-		GFF1656	0.30	-0.6
1,683,094	+		GFF1656	0.31	+0.0
1,683,133	+		GFF1656	0.34	-0.5
1,683,137	+		GFF1656	0.34	+0.6
1,683,137	+		GFF1656	0.34	-0.2
1,683,137	+		GFF1656	0.34	-1.1
1,683,137	+		GFF1656	0.34	-0.0
1,683,141	-		GFF1656	0.34	-0.4
1,683,145	-		GFF1656	0.35	-1.5
1,683,145	-		GFF1656	0.35	-0.6
1,683,145	-		GFF1656	0.35	-0.1
1,683,156	+		GFF1656	0.36	-0.9
1,683,156	+		GFF1656	0.36	+0.4
1,683,187	-		GFF1656	0.38	+0.2
1,683,197	-		GFF1656	0.39	+0.0
1,683,207	-		GFF1656	0.40	-1.1
1,683,207	-		GFF1656	0.40	-2.7
1,683,238	+		GFF1656	0.42	-0.1
1,683,244	+		GFF1656	0.43	+0.2
1,683,252	-		GFF1656	0.43	-0.5
1,683,275	+		GFF1656	0.45	+1.3
1,683,275	+		GFF1656	0.45	+0.0
1,683,282	+		GFF1656	0.46	-1.3
1,683,282	+		GFF1656	0.46	-0.4
1,683,282	+		GFF1656	0.46	-1.2
1,683,284	+		GFF1656	0.46	+0.3
1,683,290	-		GFF1656	0.46	+0.2
1,683,290	-		GFF1656	0.46	-1.2
1,683,290	-		GFF1656	0.46	-1.2
1,683,290	-		GFF1656	0.46	+0.2
1,683,304	+		GFF1656	0.47	+1.5
1,683,304	+		GFF1656	0.47	-0.1
1,683,319	-		GFF1656	0.48	-0.4
1,683,321	+		GFF1656	0.49	-0.3
1,683,321	+		GFF1656	0.49	-0.9
1,683,321	+		GFF1656	0.49	-1.1
1,683,328	+		GFF1656	0.49	+0.5
1,683,338	+		GFF1656	0.50	-0.1
1,683,347	-		GFF1656	0.51	-2.2
1,683,351	-		GFF1656	0.51	-0.3
1,683,375	+		GFF1656	0.53	-2.0
1,683,375	+		GFF1656	0.53	-1.3
1,683,375	-		GFF1656	0.53	-0.4
1,683,381	-		GFF1656	0.53	-0.9
1,683,385	+		GFF1656	0.54	-1.2
1,683,385	+		GFF1656	0.54	+0.3
1,683,402	+		GFF1656	0.55	+1.6
1,683,416	+		GFF1656	0.56	-1.4
1,683,433	-		GFF1656	0.58	-0.9
1,683,436	+		GFF1656	0.58	-0.6
1,683,445	+		GFF1656	0.58	-1.0
1,683,450	+		GFF1656	0.59	-0.2
1,683,473	-		GFF1656	0.61	+0.3
1,683,473	-		GFF1656	0.61	+0.0
1,683,473	-		GFF1656	0.61	-0.5
1,683,473	-		GFF1656	0.61	+0.2
1,683,473	-		GFF1656	0.61	+0.5
1,683,473	-		GFF1656	0.61	+1.2
1,683,489	-		GFF1656	0.62	+0.2
1,683,502	+		GFF1656	0.63	+0.8
1,683,502	+		GFF1656	0.63	+0.3
1,683,502	+		GFF1656	0.63	-1.0