Strain Fitness in Sphingobium sp. HT1-2 around GFF1548

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,579,052	+				-0.1
1,579,052	+				-0.4
1,579,052	+				+0.5
1,579,052	+				-1.6
1,579,052	+				-0.2
1,579,052	+				-0.1
1,579,052	+				-1.5
1,579,052	+				+0.0
1,579,052	+				-0.5
1,579,052	+				-1.3
1,579,052	+				-1.5
1,579,060	-				-1.1
1,579,060	-				-1.9
1,579,060	-				+0.7
1,579,060	-				+1.3
1,579,060	-				-2.3
1,579,060	-				-1.2
1,579,060	-				+0.3
1,579,060	-				+0.3
1,579,060	-				-1.4
1,579,060	-				+1.5
1,579,060	-				+0.0
1,579,060	-				+0.0
1,579,060	-				-1.1
1,579,060	-				+0.5
1,579,060	-				-0.2
1,579,060	-				+0.0
1,579,060	-				+0.3
1,579,060	-				-0.1
1,579,060	-				-1.4
1,579,060	-				-2.6
1,579,060	-				-0.8
1,579,060	-				-2.0
1,579,060	-				-1.1
1,579,068	-				-1.9
1,579,099	+				+0.8
1,579,128	-		GFF1547	0.10	-0.8
1,579,154	+		GFF1547	0.13	+1.6
1,579,162	-		GFF1547	0.14	-0.3
1,579,179	-		GFF1547	0.16	-0.2
1,579,179	-		GFF1547	0.16	+1.0
1,579,179	-		GFF1547	0.16	-1.3
1,579,189	-		GFF1547	0.18	-1.3
1,579,229	-		GFF1547	0.22	+0.5
1,579,235	+		GFF1547	0.23	+0.2
1,579,243	-		GFF1547	0.24	-0.1
1,579,249	-		GFF1547	0.25	-1.4
1,579,249	-		GFF1547	0.25	+0.5
1,579,259	+		GFF1547	0.26	-0.3
1,579,264	-		GFF1547	0.27	-1.0
1,579,264	-		GFF1547	0.27	+0.1
1,579,264	-		GFF1547	0.27	-0.7
1,579,269	-		GFF1547	0.27	-0.7
1,579,284	-		GFF1547	0.29	-1.1
1,579,284	-		GFF1547	0.29	-0.8
1,579,284	-		GFF1547	0.29	-0.5
1,579,284	-		GFF1547	0.29	-1.1
1,579,284	-		GFF1547	0.29	+0.7
1,579,294	-		GFF1547	0.30	+0.5
1,579,345	-		GFF1547	0.36	-1.8
1,579,358	-		GFF1547	0.38	-1.1
1,579,385	+		GFF1547	0.41	-2.4
1,579,412	+		GFF1547	0.45	-0.6
1,579,413	+		GFF1547	0.45	-1.7
1,579,413	+		GFF1547	0.45	+0.9
1,579,415	-		GFF1547	0.45	-0.1
1,579,421	-		GFF1547	0.46	-0.7
1,579,437	-		GFF1547	0.48	-0.2
1,579,475	+		GFF1547	0.52	-0.1
1,579,482	-		GFF1547	0.53	-1.6
1,579,488	-		GFF1547	0.54	+0.9
1,579,489	-		GFF1547	0.54	+0.9
1,579,491	+		GFF1547	0.54	-0.9
1,579,491	+		GFF1547	0.54	-2.5
1,579,493	-		GFF1547	0.55	-1.1
1,579,493	-		GFF1547	0.55	+0.6
1,579,494	-		GFF1547	0.55	-1.8
1,579,494	-		GFF1547	0.55	+0.0
1,579,494	-		GFF1547	0.55	+0.7
1,579,494	-		GFF1547	0.55	-0.7
1,579,494	-		GFF1547	0.55	-1.7
1,579,494	-		GFF1547	0.55	-1.3
1,579,494	-		GFF1547	0.55	-1.3
1,579,494	-		GFF1547	0.55	-0.5
1,579,494	-		GFF1547	0.55	-1.3
1,579,494	-		GFF1547	0.55	+0.3
1,579,494	-		GFF1547	0.55	-0.4
1,579,544	+		GFF1547	0.61	+1.2
1,579,552	-		GFF1547	0.62	-0.5
1,579,620	-		GFF1547	0.70	+0.5
1,579,664	+		GFF1547	0.75	-1.1
1,579,670	+		GFF1547	0.76	+0.0
1,579,671	-		GFF1547	0.76	-0.2
1,579,692	-		GFF1547	0.79	+0.6
1,579,741	-		GFF1547	0.85	-1.4
1,579,743	-		GFF1547	0.85	+0.1
1,579,753	-		GFF1547	0.86	-0.9
1,579,772	+		GFF1547	0.88	+1.2
1,579,772	+		GFF1547	0.88	+1.0
1,579,772	+		GFF1547	0.88	-0.4
1,579,772	+		GFF1547	0.88	-0.1
1,579,772	+		GFF1547	0.88	-0.3
1,579,780	-		GFF1547	0.89	+0.6
1,579,780	-		GFF1547	0.89	-1.2
1,579,780	-		GFF1547	0.89	-0.9
1,579,780	-		GFF1547	0.89	-1.4
1,579,791	+				-1.8
1,579,795	-				+0.9
1,579,797	+				-0.9
1,579,799	-				+0.9
1,579,799	-				-0.1
1,579,799	-				-0.7
1,579,799	-				-0.7
1,579,800	-				-1.7
1,579,812	-				-1.0
1,579,836	-				-0.5
1,579,856	-				-1.1
1,579,857	-				-2.2
1,579,880	-				-0.6
1,579,891	-				+0.3
1,579,901	+				-1.2
1,579,909	-				+0.4
1,580,814	-				+0.5
1,580,814	-				-0.4
1,580,819	-				-0.8
1,580,862	-				-0.8
1,580,878	+				-0.1
1,580,886	-				-0.7
1,580,888	+				-1.1
1,580,932	-				-0.7
1,580,937	-				-0.1
1,580,969	-				+0.9
1,580,969	-				-0.7
1,581,008	-				-0.4
1,581,008	-				+0.3
1,581,018	-				+0.5
1,581,018	-				-0.5
1,581,018	-				+0.8
1,581,023	+				-0.2
1,581,031	-				-1.3
1,581,032	+				-2.7
1,581,032	-				+0.6
1,581,032	-				+0.1
1,581,034	+				-0.6
1,581,034	+				-0.3
1,581,040	-				-0.7
1,581,045	+				-0.3
1,581,058	-				-1.8
1,581,075	+				+0.1
1,581,083	-				+0.5
1,581,093	-				-0.8
1,581,099	+				-0.3
1,581,099	+				-0.6
1,581,104	+		GFF1549	0.10	-0.3
1,581,104	+		GFF1549	0.10	-1.8
1,581,104	+		GFF1549	0.10	-1.1
1,581,106	-		GFF1549	0.10	-0.5
1,581,107	-		GFF1549	0.10	+0.2
1,581,112	+		GFF1549	0.11	-0.7
1,581,112	-		GFF1549	0.11	+0.5
1,581,112	-		GFF1549	0.11	+0.7
1,581,112	-		GFF1549	0.11	-0.8
1,581,112	-		GFF1549	0.11	+0.5
1,581,112	-		GFF1549	0.11	-0.1
1,581,112	-		GFF1549	0.11	+1.3
1,581,112	-		GFF1549	0.11	+0.1
1,581,117	-		GFF1549	0.11	+0.9
1,581,122	+		GFF1549	0.11	-1.4
1,581,130	-		GFF1549	0.12	-0.6
1,581,135	-		GFF1549	0.12	-0.1
1,581,135	-		GFF1549	0.12	-1.7
1,581,135	-		GFF1549	0.12	-0.9
1,581,140	-		GFF1549	0.13	+0.6
1,581,148	-		GFF1549	0.13	-0.5
1,581,148	-		GFF1549	0.13	+0.6
1,581,153	+		GFF1549	0.14	-1.5
1,581,158	-		GFF1549	0.14	-0.3
1,581,160	+		GFF1549	0.14	-0.1
1,581,166	-		GFF1549	0.14	-0.1
1,581,168	+		GFF1549	0.15	-2.0
1,581,176	-		GFF1549	0.15	+0.2
1,581,199	-		GFF1549	0.17	-0.2
1,581,240	-		GFF1549	0.19	-0.6
1,581,244	-		GFF1549	0.20	-1.4
1,581,266	-		GFF1549	0.21	-0.1
1,581,268	+		GFF1549	0.21	-0.2
1,581,292	+		GFF1549	0.23	-1.1
1,581,304	+		GFF1549	0.24	-1.6
1,581,324	+		GFF1549	0.25	-0.9
1,581,334	+		GFF1549	0.26	+0.1
1,581,350	+		GFF1549	0.27	+0.9
1,581,366	-		GFF1549	0.28	-0.4
1,581,375	+		GFF1549	0.28	+0.8
1,581,400	-		GFF1549	0.30	+0.4
1,581,472	-		GFF1549	0.35	-0.2
1,581,497	+		GFF1549	0.37	-1.5
1,581,497	+		GFF1549	0.37	+1.6
1,581,506	-		GFF1549	0.37	+1.0
1,581,506	-		GFF1549	0.37	+0.4
1,581,506	-		GFF1549	0.37	+1.1
1,581,515	+		GFF1549	0.38	+0.4
1,581,515	-		GFF1549	0.38	+1.3
1,581,552	+		GFF1549	0.40	-0.8
1,581,554	+		GFF1549	0.40	-1.0
1,581,560	-		GFF1549	0.41	-0.1
1,581,562	-		GFF1549	0.41	-1.8
1,581,575	-		GFF1549	0.42	-0.1
1,581,578	-		GFF1549	0.42	-1.1
1,581,580	+		GFF1549	0.42	-0.7
1,581,581	-		GFF1549	0.42	+0.9
1,581,586	-		GFF1549	0.43	-1.4
1,581,608	+		GFF1549	0.44	-0.6
1,581,608	+		GFF1549	0.44	+0.0
1,581,614	-		GFF1549	0.44	+1.0
1,581,614	-		GFF1549	0.44	+1.1
1,581,620	+		GFF1549	0.45	-1.3
1,581,653	+		GFF1549	0.47	-1.8
1,581,661	-		GFF1549	0.48	-0.2
1,581,677	+		GFF1549	0.49	-1.6
1,581,682	+		GFF1549	0.49	+0.4
1,581,682	+		GFF1549	0.49	-0.0
1,581,682	+		GFF1549	0.49	+0.3
1,581,684	+		GFF1549	0.49	+0.8
1,581,687	+		GFF1549	0.49	+0.7
1,581,690	-		GFF1549	0.50	-2.1
1,581,690	-		GFF1549	0.50	-0.5
1,581,690	-		GFF1549	0.50	+0.7
1,581,690	-		GFF1549	0.50	-0.3
1,581,692	-		GFF1549	0.50	-0.3
1,581,695	-		GFF1549	0.50	+0.8
1,581,703	+		GFF1549	0.50	+1.1
1,581,703	+		GFF1549	0.50	-1.7
1,581,706	-		GFF1549	0.51	+0.1
1,581,706	-		GFF1549	0.51	-1.1
1,581,706	-		GFF1549	0.51	-0.4
1,581,706	-		GFF1549	0.51	-0.1
1,581,706	-		GFF1549	0.51	+0.6
1,581,711	-		GFF1549	0.51	-0.5
1,581,724	+		GFF1549	0.52	+0.4
1,581,732	-		GFF1549	0.52	-1.8
1,581,732	-		GFF1549	0.52	-0.3
1,581,742	+		GFF1549	0.53	+0.4
1,581,742	-		GFF1549	0.53	-2.3
1,581,743	-		GFF1549	0.53	+0.0
1,581,755	-		GFF1549	0.54	+0.8
1,581,755	-		GFF1549	0.54	-0.1
1,581,772	-		GFF1549	0.55	-0.5
1,581,782	-		GFF1549	0.56	-1.3
1,581,792	+		GFF1549	0.56	+0.3