Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1542 and GFF1543 are separated by 79 nucleotides GFF1543 and GFF1544 are separated by 178 nucleotides GFF1544 and GFF1545 are separated by 120 nucleotides
GFF1542 - Murein endolytic transglycosylase MltG, at 1,574,107 to 1,575,108
GFF1542
GFF1543 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 1,575,188 to 1,576,447
GFF1543
GFF1544 - Acyl carrier protein, at 1,576,626 to 1,576,859
GFF1544
GFF1545 - hypothetical protein, at 1,576,980 to 1,578,290
GFF1545
Position (kb)
1575
1576
1577 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1574.239 kb on + strand, within GFF1542 at 1574.239 kb on + strand, within GFF1542 at 1574.274 kb on - strand, within GFF1542 at 1574.293 kb on - strand, within GFF1542 at 1574.312 kb on + strand, within GFF1542 at 1574.312 kb on - strand, within GFF1542 at 1574.320 kb on - strand, within GFF1542 at 1574.329 kb on - strand, within GFF1542 at 1574.336 kb on + strand, within GFF1542 at 1574.372 kb on + strand, within GFF1542 at 1574.374 kb on - strand, within GFF1542 at 1574.420 kb on - strand, within GFF1542 at 1574.438 kb on - strand, within GFF1542 at 1574.440 kb on - strand, within GFF1542 at 1574.461 kb on - strand, within GFF1542 at 1574.474 kb on - strand, within GFF1542 at 1574.555 kb on + strand, within GFF1542 at 1574.563 kb on - strand, within GFF1542 at 1574.563 kb on - strand, within GFF1542 at 1574.563 kb on - strand, within GFF1542 at 1574.563 kb on - strand, within GFF1542 at 1574.581 kb on - strand, within GFF1542 at 1574.604 kb on + strand, within GFF1542 at 1574.746 kb on - strand, within GFF1542 at 1574.787 kb on - strand, within GFF1542 at 1574.788 kb on + strand, within GFF1542 at 1574.821 kb on - strand, within GFF1542 at 1574.847 kb on + strand, within GFF1542 at 1574.857 kb on + strand, within GFF1542 at 1574.875 kb on + strand, within GFF1542 at 1574.875 kb on + strand, within GFF1542 at 1574.880 kb on + strand, within GFF1542 at 1574.883 kb on - strand, within GFF1542 at 1574.883 kb on - strand, within GFF1542 at 1574.884 kb on + strand, within GFF1542 at 1574.899 kb on - strand, within GFF1542 at 1574.930 kb on + strand, within GFF1542 at 1574.940 kb on + strand, within GFF1542 at 1574.940 kb on + strand, within GFF1542 at 1574.948 kb on - strand, within GFF1542 at 1574.948 kb on - strand, within GFF1542 at 1574.963 kb on + strand, within GFF1542 at 1574.966 kb on + strand, within GFF1542 at 1574.988 kb on - strand, within GFF1542 at 1574.993 kb on - strand, within GFF1542 at 1575.001 kb on + strand, within GFF1542 at 1575.001 kb on + strand, within GFF1542 at 1575.001 kb on + strand, within GFF1542 at 1575.001 kb on + strand, within GFF1542 at 1575.003 kb on - strand, within GFF1542 at 1575.044 kb on - strand at 1575.062 kb on - strand at 1575.067 kb on - strand at 1575.091 kb on + strand at 1575.114 kb on - strand at 1575.114 kb on - strand at 1575.156 kb on + strand at 1575.161 kb on + strand at 1575.164 kb on - strand at 1575.176 kb on + strand at 1575.196 kb on + strand at 1576.530 kb on - strand at 1576.579 kb on - strand at 1576.611 kb on - strand at 1576.631 kb on - strand at 1576.910 kb on - strand at 1576.946 kb on - strand at 1576.951 kb on - strand at 1576.954 kb on - strand at 1576.961 kb on + strand at 1577.071 kb on + strand at 1577.078 kb on + strand at 1577.078 kb on + strand at 1577.078 kb on + strand at 1577.078 kb on + strand at 1577.078 kb on + strand at 1577.078 kb on + strand at 1577.083 kb on + strand at 1577.083 kb on + strand at 1577.083 kb on + strand at 1577.083 kb on + strand at 1577.086 kb on - strand at 1577.093 kb on + strand at 1577.101 kb on + strand at 1577.101 kb on + strand at 1577.101 kb on + strand at 1577.101 kb on + strand at 1577.101 kb on + strand at 1577.101 kb on - strand at 1577.101 kb on - strand at 1577.109 kb on - strand at 1577.111 kb on + strand, within GFF1545 at 1577.119 kb on - strand, within GFF1545 at 1577.119 kb on - strand, within GFF1545 at 1577.128 kb on + strand, within GFF1545 at 1577.136 kb on - strand, within GFF1545 at 1577.160 kb on + strand, within GFF1545 at 1577.168 kb on + strand, within GFF1545 at 1577.168 kb on + strand, within GFF1545 at 1577.178 kb on + strand, within GFF1545 at 1577.191 kb on - strand, within GFF1545 at 1577.196 kb on - strand, within GFF1545 at 1577.220 kb on + strand, within GFF1545 at 1577.228 kb on - strand, within GFF1545 at 1577.231 kb on + strand, within GFF1545 at 1577.231 kb on + strand, within GFF1545 at 1577.231 kb on + strand, within GFF1545 at 1577.239 kb on - strand, within GFF1545 at 1577.239 kb on - strand, within GFF1545 at 1577.261 kb on + strand, within GFF1545 at 1577.261 kb on + strand, within GFF1545 at 1577.261 kb on + strand, within GFF1545 at 1577.261 kb on + strand, within GFF1545 at 1577.261 kb on + strand, within GFF1545 at 1577.261 kb on + strand, within GFF1545 at 1577.261 kb on + strand, within GFF1545 at 1577.261 kb on + strand, within GFF1545 at 1577.261 kb on + strand, within GFF1545 at 1577.266 kb on + strand, within GFF1545 at 1577.269 kb on - strand, within GFF1545 at 1577.269 kb on - strand, within GFF1545 at 1577.269 kb on - strand, within GFF1545 at 1577.269 kb on - strand, within GFF1545 at 1577.269 kb on - strand, within GFF1545 at 1577.269 kb on - strand, within GFF1545 at 1577.269 kb on - strand, within GFF1545 at 1577.269 kb on - strand, within GFF1545 at 1577.269 kb on - strand, within GFF1545 at 1577.270 kb on - strand, within GFF1545 at 1577.282 kb on + strand, within GFF1545 at 1577.282 kb on + strand, within GFF1545 at 1577.282 kb on + strand, within GFF1545 at 1577.285 kb on - strand, within GFF1545 at 1577.285 kb on - strand, within GFF1545 at 1577.290 kb on - strand, within GFF1545 at 1577.290 kb on - strand, within GFF1545 at 1577.290 kb on - strand, within GFF1545 at 1577.290 kb on - strand, within GFF1545 at 1577.290 kb on - strand, within GFF1545 at 1577.295 kb on - strand, within GFF1545 at 1577.296 kb on + strand, within GFF1545 at 1577.334 kb on + strand, within GFF1545 at 1577.339 kb on + strand, within GFF1545 at 1577.346 kb on + strand, within GFF1545 at 1577.346 kb on + strand, within GFF1545 at 1577.346 kb on + strand, within GFF1545 at 1577.346 kb on + strand, within GFF1545 at 1577.351 kb on + strand, within GFF1545 at 1577.357 kb on + strand, within GFF1545 at 1577.358 kb on + strand, within GFF1545 at 1577.358 kb on + strand, within GFF1545 at 1577.358 kb on + strand, within GFF1545 at 1577.358 kb on + strand, within GFF1545 at 1577.358 kb on + strand, within GFF1545 at 1577.364 kb on - strand, within GFF1545 at 1577.366 kb on - strand, within GFF1545 at 1577.368 kb on + strand, within GFF1545 at 1577.376 kb on - strand, within GFF1545 at 1577.376 kb on - strand, within GFF1545 at 1577.376 kb on - strand, within GFF1545 at 1577.398 kb on + strand, within GFF1545 at 1577.407 kb on + strand, within GFF1545 at 1577.412 kb on + strand, within GFF1545 at 1577.413 kb on + strand, within GFF1545 at 1577.413 kb on + strand, within GFF1545 at 1577.413 kb on + strand, within GFF1545 at 1577.413 kb on + strand, within GFF1545 at 1577.421 kb on - strand, within GFF1545 at 1577.421 kb on - strand, within GFF1545 at 1577.430 kb on + strand, within GFF1545 at 1577.431 kb on + strand, within GFF1545
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 1,574,239 + GFF1542 0.13 +2.1 1,574,239 + GFF1542 0.13 +0.4 1,574,274 - GFF1542 0.17 +1.7 1,574,293 - GFF1542 0.19 +1.7 1,574,312 + GFF1542 0.20 -0.6 1,574,312 - GFF1542 0.20 +1.6 1,574,320 - GFF1542 0.21 +0.9 1,574,329 - GFF1542 0.22 +0.1 1,574,336 + GFF1542 0.23 +0.2 1,574,372 + GFF1542 0.26 +0.0 1,574,374 - GFF1542 0.27 -1.1 1,574,420 - GFF1542 0.31 +0.4 1,574,438 - GFF1542 0.33 +0.8 1,574,440 - GFF1542 0.33 -0.9 1,574,461 - GFF1542 0.35 -0.0 1,574,474 - GFF1542 0.37 +0.5 1,574,555 + GFF1542 0.45 -0.8 1,574,563 - GFF1542 0.46 -0.5 1,574,563 - GFF1542 0.46 -0.4 1,574,563 - GFF1542 0.46 +0.6 1,574,563 - GFF1542 0.46 +1.0 1,574,581 - GFF1542 0.47 -0.1 1,574,604 + GFF1542 0.50 +0.1 1,574,746 - GFF1542 0.64 -1.2 1,574,787 - GFF1542 0.68 +0.1 1,574,788 + GFF1542 0.68 -0.2 1,574,821 - GFF1542 0.71 +1.4 1,574,847 + GFF1542 0.74 -0.5 1,574,857 + GFF1542 0.75 -0.2 1,574,875 + GFF1542 0.77 +1.2 1,574,875 + GFF1542 0.77 +0.5 1,574,880 + GFF1542 0.77 -0.1 1,574,883 - GFF1542 0.77 -0.3 1,574,883 - GFF1542 0.77 +0.2 1,574,884 + GFF1542 0.78 +2.5 1,574,899 - GFF1542 0.79 -0.3 1,574,930 + GFF1542 0.82 -1.4 1,574,940 + GFF1542 0.83 +0.3 1,574,940 + GFF1542 0.83 +2.0 1,574,948 - GFF1542 0.84 +0.8 1,574,948 - GFF1542 0.84 +2.4 1,574,963 + GFF1542 0.85 -0.1 1,574,966 + GFF1542 0.86 +1.7 1,574,988 - GFF1542 0.88 -0.8 1,574,993 - GFF1542 0.88 +0.1 1,575,001 + GFF1542 0.89 -1.3 1,575,001 + GFF1542 0.89 -0.7 1,575,001 + GFF1542 0.89 -2.1 1,575,001 + GFF1542 0.89 +0.7 1,575,003 - GFF1542 0.89 -1.9 1,575,044 - -0.3 1,575,062 - +1.0 1,575,067 - +0.6 1,575,091 + +0.3 1,575,114 - +1.8 1,575,114 - -0.9 1,575,156 + +0.1 1,575,161 + -0.4 1,575,164 - +0.8 1,575,176 + -0.2 1,575,196 + +0.4 1,576,530 - -1.5 1,576,579 - -1.5 1,576,611 - -0.5 1,576,631 - -0.1 1,576,910 - -0.3 1,576,946 - +1.0 1,576,951 - -1.4 1,576,954 - -1.5 1,576,961 + +1.4 1,577,071 + -0.6 1,577,078 + -0.5 1,577,078 + +0.4 1,577,078 + +0.9 1,577,078 + +0.6 1,577,078 + -0.9 1,577,078 + -1.2 1,577,083 + -0.9 1,577,083 + -1.7 1,577,083 + +0.9 1,577,083 + -1.5 1,577,086 - +0.0 1,577,093 + +0.5 1,577,101 + +0.0 1,577,101 + -0.5 1,577,101 + +0.5 1,577,101 + -0.5 1,577,101 + -0.2 1,577,101 - -2.1 1,577,101 - -1.7 1,577,109 - -0.5 1,577,111 + GFF1545 0.10 +0.5 1,577,119 - GFF1545 0.11 +0.3 1,577,119 - GFF1545 0.11 -1.3 1,577,128 + GFF1545 0.11 -0.0 1,577,136 - GFF1545 0.12 -0.9 1,577,160 + GFF1545 0.14 +1.2 1,577,168 + GFF1545 0.14 +0.1 1,577,168 + GFF1545 0.14 -1.3 1,577,178 + GFF1545 0.15 -0.2 1,577,191 - GFF1545 0.16 +0.7 1,577,196 - GFF1545 0.16 -0.5 1,577,220 + GFF1545 0.18 -1.0 1,577,228 - GFF1545 0.19 -0.5 1,577,231 + GFF1545 0.19 -0.9 1,577,231 + GFF1545 0.19 -0.9 1,577,231 + GFF1545 0.19 -0.8 1,577,239 - GFF1545 0.20 -0.9 1,577,239 - GFF1545 0.20 +0.9 1,577,261 + GFF1545 0.21 -0.9 1,577,261 + GFF1545 0.21 -0.2 1,577,261 + GFF1545 0.21 -0.8 1,577,261 + GFF1545 0.21 -0.3 1,577,261 + GFF1545 0.21 +0.1 1,577,261 + GFF1545 0.21 +0.6 1,577,261 + GFF1545 0.21 -1.0 1,577,261 + GFF1545 0.21 -1.4 1,577,261 + GFF1545 0.21 -0.5 1,577,266 + GFF1545 0.22 -0.3 1,577,269 - GFF1545 0.22 +0.7 1,577,269 - GFF1545 0.22 -1.3 1,577,269 - GFF1545 0.22 +0.4 1,577,269 - GFF1545 0.22 +1.0 1,577,269 - GFF1545 0.22 -0.6 1,577,269 - GFF1545 0.22 -0.2 1,577,269 - GFF1545 0.22 -0.8 1,577,269 - GFF1545 0.22 +0.8 1,577,269 - GFF1545 0.22 -1.9 1,577,270 - GFF1545 0.22 -1.4 1,577,282 + GFF1545 0.23 +0.3 1,577,282 + GFF1545 0.23 -0.1 1,577,282 + GFF1545 0.23 -0.8 1,577,285 - GFF1545 0.23 +0.9 1,577,285 - GFF1545 0.23 -0.2 1,577,290 - GFF1545 0.24 +1.8 1,577,290 - GFF1545 0.24 +0.4 1,577,290 - GFF1545 0.24 +0.2 1,577,290 - GFF1545 0.24 +0.6 1,577,290 - GFF1545 0.24 -0.4 1,577,295 - GFF1545 0.24 -0.8 1,577,296 + GFF1545 0.24 +0.5 1,577,334 + GFF1545 0.27 -2.4 1,577,339 + GFF1545 0.27 -0.1 1,577,346 + GFF1545 0.28 +0.4 1,577,346 + GFF1545 0.28 +1.1 1,577,346 + GFF1545 0.28 +0.2 1,577,346 + GFF1545 0.28 +0.7 1,577,351 + GFF1545 0.28 +0.1 1,577,357 + GFF1545 0.29 -0.2 1,577,358 + GFF1545 0.29 -1.3 1,577,358 + GFF1545 0.29 +0.0 1,577,358 + GFF1545 0.29 +0.5 1,577,358 + GFF1545 0.29 +1.7 1,577,358 + GFF1545 0.29 -1.2 1,577,364 - GFF1545 0.29 +0.9 1,577,366 - GFF1545 0.29 -0.9 1,577,368 + GFF1545 0.30 -1.7 1,577,376 - GFF1545 0.30 +0.7 1,577,376 - GFF1545 0.30 -1.4 1,577,376 - GFF1545 0.30 -1.7 1,577,398 + GFF1545 0.32 -0.3 1,577,407 + GFF1545 0.33 +2.2 1,577,412 + GFF1545 0.33 +0.6 1,577,413 + GFF1545 0.33 +0.1 1,577,413 + GFF1545 0.33 +1.2 1,577,413 + GFF1545 0.33 -0.1 1,577,413 + GFF1545 0.33 -1.3 1,577,421 - GFF1545 0.34 -1.6 1,577,421 - GFF1545 0.34 +0.1 1,577,430 + GFF1545 0.34 -0.7 1,577,431 + GFF1545 0.34 -1.4
Or see this region's nucleotide sequence