Strain Fitness in Sphingobium sp. HT1-2 around GFF1518

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,547,047	+		GFF1516	0.70	-1.5
1,547,075	+		GFF1516	0.74	-0.4
1,547,110	-		GFF1516	0.79	-1.1
1,547,127	+		GFF1516	0.81	-0.3
1,547,127	+		GFF1516	0.81	-0.5
1,547,127	+		GFF1516	0.81	-2.1
1,547,127	+		GFF1516	0.81	-0.3
1,547,127	+		GFF1516	0.81	+0.1
1,547,127	+		GFF1516	0.81	-0.4
1,547,127	+		GFF1516	0.81	-0.9
1,547,127	+		GFF1516	0.81	+0.4
1,547,127	+		GFF1516	0.81	-1.3
1,547,127	+		GFF1516	0.81	-0.5
1,547,127	+		GFF1516	0.81	-0.1
1,547,127	+		GFF1516	0.81	+0.3
1,547,127	+		GFF1516	0.81	-1.5
1,547,127	+		GFF1516	0.81	-0.1
1,547,135	-		GFF1516	0.82	+0.3
1,547,135	-		GFF1516	0.82	-0.6
1,547,135	-		GFF1516	0.82	-2.3
1,547,135	-		GFF1516	0.82	-1.3
1,547,135	-		GFF1516	0.82	-0.2
1,547,135	-		GFF1516	0.82	-0.6
1,547,135	-		GFF1516	0.82	+0.2
1,547,135	-		GFF1516	0.82	-2.0
1,547,135	-		GFF1516	0.82	-1.6
1,547,135	-		GFF1516	0.82	-0.5
1,547,135	-		GFF1516	0.82	+0.1
1,547,135	-		GFF1516	0.82	-0.6
1,547,135	-		GFF1516	0.82	-0.7
1,547,135	-		GFF1516	0.82	-0.5
1,547,135	-		GFF1516	0.82	+0.3
1,547,135	-		GFF1516	0.82	-0.1
1,547,135	-		GFF1516	0.82	-0.6
1,547,135	-		GFF1516	0.82	-1.3
1,547,140	-		GFF1516	0.83	-0.4
1,547,145	-		GFF1516	0.84	-1.2
1,547,160	-		GFF1516	0.86	+0.5
1,547,163	+		GFF1516	0.86	-1.8
1,547,170	-		GFF1516	0.87	-1.4
1,547,171	-		GFF1516	0.87	+0.1
1,547,171	-		GFF1516	0.87	+0.2
1,547,171	-		GFF1516	0.87	+1.7
1,547,197	+				-1.7
1,547,197	+				-1.4
1,547,197	+				-1.5
1,547,197	+				+0.4
1,547,197	+				-0.1
1,547,197	+				-1.8
1,547,205	-				+0.0
1,547,210	-				-1.8
1,547,215	-				-0.3
1,547,219	+				-1.6
1,547,229	+				+0.5
1,547,256	+				-0.1
1,547,272	+				-0.3
1,547,272	+				+0.1
1,547,273	-				-0.5
1,547,273	-				-0.4
1,547,278	-				-0.3
1,547,289	+				-0.9
1,547,302	-				-0.6
1,547,305	+				-0.3
1,547,313	-				-0.3
1,547,313	-				-1.5
1,547,323	+				-2.9
1,547,323	+				-0.8
1,547,331	-				-1.5
1,547,331	-				-0.4
1,547,351	+		GFF1517	0.10	-0.1
1,547,370	-		GFF1517	0.13	-0.3
1,547,401	+		GFF1517	0.17	-1.3
1,547,411	+		GFF1517	0.19	-0.4
1,547,411	+		GFF1517	0.19	-1.0
1,547,417	+		GFF1517	0.19	-0.8
1,547,419	-		GFF1517	0.20	+0.3
1,547,419	-		GFF1517	0.20	-0.7
1,547,436	-		GFF1517	0.22	-0.3
1,547,455	+		GFF1517	0.25	-0.1
1,547,455	+		GFF1517	0.25	-0.2
1,547,469	+		GFF1517	0.26	-1.7
1,547,469	+		GFF1517	0.26	+0.5
1,547,474	+		GFF1517	0.27	-1.1
1,547,477	-		GFF1517	0.28	-0.3
1,547,479	+		GFF1517	0.28	-0.8
1,547,479	+		GFF1517	0.28	-0.7
1,547,479	+		GFF1517	0.28	-0.9
1,547,487	-		GFF1517	0.29	+0.9
1,547,487	-		GFF1517	0.29	+1.0
1,547,487	-		GFF1517	0.29	+0.5
1,547,492	-		GFF1517	0.30	-0.8
1,547,493	+		GFF1517	0.30	-1.0
1,547,493	+		GFF1517	0.30	-0.1
1,547,498	+		GFF1517	0.30	-1.8
1,547,501	-		GFF1517	0.31	+0.4
1,547,501	-		GFF1517	0.31	+0.2
1,547,513	+		GFF1517	0.32	+0.0
1,547,513	+		GFF1517	0.32	-0.6
1,547,521	-		GFF1517	0.33	+0.5
1,547,564	+		GFF1517	0.39	-0.6
1,547,569	+		GFF1517	0.40	-1.1
1,547,605	+		GFF1517	0.45	+0.7
1,547,617	-		GFF1517	0.46	-1.3
1,547,622	-		GFF1517	0.47	-1.1
1,547,635	+		GFF1517	0.49	-1.5
1,547,635	+		GFF1517	0.49	-0.4
1,547,635	+		GFF1517	0.49	-1.4
1,547,643	-		GFF1517	0.50	-0.5
1,547,643	-		GFF1517	0.50	-0.0
1,547,694	+		GFF1517	0.57	-2.3
1,547,697	-		GFF1517	0.57	-0.2
1,547,709	+		GFF1517	0.59	-0.0
1,547,709	+		GFF1517	0.59	-1.2
1,547,709	+		GFF1517	0.59	-0.6
1,547,709	+		GFF1517	0.59	+0.1
1,547,709	+		GFF1517	0.59	+0.0
1,547,717	-		GFF1517	0.60	-1.6
1,547,717	-		GFF1517	0.60	+1.3
1,547,717	-		GFF1517	0.60	-0.4
1,547,717	-		GFF1517	0.60	-0.5
1,547,717	-		GFF1517	0.60	-0.2
1,547,717	-		GFF1517	0.60	+0.5
1,547,717	-		GFF1517	0.60	+1.4
1,547,719	-		GFF1517	0.60	-0.7
1,547,719	-		GFF1517	0.60	-0.3
1,547,719	-		GFF1517	0.60	+0.1
1,547,719	-		GFF1517	0.60	+0.9
1,547,747	-		GFF1517	0.64	-0.4
1,547,754	+		GFF1517	0.65	+0.3
1,547,779	+		GFF1517	0.68	+0.5
1,547,779	+		GFF1517	0.68	+0.2
1,547,787	-		GFF1517	0.70	+0.7
1,547,787	-		GFF1517	0.70	-1.8
1,547,794	-		GFF1517	0.70	-0.4
1,547,794	-		GFF1517	0.70	-0.1
1,547,796	+		GFF1517	0.71	-0.7
1,547,833	+		GFF1517	0.76	+0.3
1,547,845	-		GFF1517	0.77	+0.4
1,547,850	+		GFF1517	0.78	+0.3
1,547,868	+		GFF1517	0.80	-1.3
1,547,868	+		GFF1517	0.80	-0.5
1,547,868	+		GFF1517	0.80	-0.8
1,547,875	+		GFF1517	0.81	-2.4
1,547,876	-		GFF1517	0.82	-0.2
1,547,876	-		GFF1517	0.82	-0.3
1,547,876	-		GFF1517	0.82	-0.8
1,547,883	-		GFF1517	0.83	-1.4
1,547,888	-		GFF1517	0.83	+1.1
1,547,890	+		GFF1517	0.83	-0.1
1,547,891	-		GFF1517	0.84	-0.6
1,547,898	-		GFF1517	0.85	-1.8
1,547,898	-		GFF1517	0.85	+0.5
1,547,904	+		GFF1517	0.85	-0.1
1,547,911	-		GFF1517	0.86	-1.4
1,547,924	+		GFF1517	0.88	+0.3
1,547,929	+		GFF1517	0.89	-2.1
1,547,932	-		GFF1517	0.89	-0.7
1,547,937	-		GFF1517	0.90	+0.6
1,547,942	-				+0.1
1,547,978	-				-2.8
1,547,981	+				-1.3
1,547,981	+				+1.5
1,547,983	-				-0.6
1,547,984	-				-0.1
1,547,984	-				-0.4
1,547,989	-				+0.3
1,547,993	+				-0.9
1,548,001	+				-0.6
1,548,001	+				-1.7
1,548,001	+				-0.0
1,548,009	-				-1.7
1,548,009	-				+0.6
1,548,013	+				-1.6
1,548,021	+				-0.7
1,548,029	-				-1.6
1,548,039	-				-2.8
1,548,039	-				-0.0
1,548,055	+				-0.5
1,548,068	-				-1.0
1,548,068	-				+0.5
1,548,073	-				-0.7
1,548,073	-				+0.5
1,548,111	-				+0.1
1,548,155	+		GFF1518	0.13	-0.0
1,548,155	-		GFF1518	0.13	-0.1
1,548,160	+		GFF1518	0.14	-2.0
1,548,163	-		GFF1518	0.14	-0.8
1,548,168	-		GFF1518	0.15	-0.1
1,548,176	+		GFF1518	0.16	+0.0
1,548,176	+		GFF1518	0.16	+1.3
1,548,179	-		GFF1518	0.16	-2.0
1,548,181	+		GFF1518	0.16	+0.1
1,548,192	+		GFF1518	0.18	-0.7
1,548,192	+		GFF1518	0.18	-1.1
1,548,200	-		GFF1518	0.19	-1.4
1,548,200	-		GFF1518	0.19	-0.6
1,548,209	+		GFF1518	0.20	-1.3
1,548,209	+		GFF1518	0.20	+0.1
1,548,219	+		GFF1518	0.21	+0.1
1,548,227	-		GFF1518	0.22	+0.4
1,548,227	-		GFF1518	0.22	-0.7
1,548,227	-		GFF1518	0.22	+0.6
1,548,232	-		GFF1518	0.22	-0.7
1,548,246	-		GFF1518	0.24	-0.1
1,548,256	-		GFF1518	0.25	-0.8
1,548,256	-		GFF1518	0.25	-2.0
1,548,256	-		GFF1518	0.25	+0.9
1,548,256	-		GFF1518	0.25	-0.5
1,548,257	-		GFF1518	0.25	+0.4
1,548,259	+		GFF1518	0.25	+0.6
1,548,259	+		GFF1518	0.25	+1.2
1,548,259	+		GFF1518	0.25	+0.2
1,548,264	+		GFF1518	0.26	+1.1
1,548,267	-		GFF1518	0.26	-0.1
1,548,267	-		GFF1518	0.26	+1.2
1,548,267	-		GFF1518	0.26	-0.2
1,548,272	-		GFF1518	0.27	-1.3
1,548,279	-		GFF1518	0.28	-1.7
1,548,283	+		GFF1518	0.28	-2.1
1,548,288	+		GFF1518	0.29	+0.2
1,548,289	+		GFF1518	0.29	-0.9
1,548,294	+		GFF1518	0.29	-1.0
1,548,301	+		GFF1518	0.30	-0.8
1,548,302	-		GFF1518	0.30	+0.5
1,548,302	-		GFF1518	0.30	+1.5
1,548,302	-		GFF1518	0.30	-1.0
1,548,302	-		GFF1518	0.30	+0.7
1,548,302	-		GFF1518	0.30	-0.4
1,548,302	-		GFF1518	0.30	-1.5
1,548,309	-		GFF1518	0.31	+0.8
1,548,344	+		GFF1518	0.35	-0.2
1,548,347	-		GFF1518	0.36	+0.0
1,548,363	+		GFF1518	0.37	+0.4
1,548,379	-		GFF1518	0.39	-0.1
1,548,385	+		GFF1518	0.40	-0.6
1,548,413	+		GFF1518	0.43	-0.3
1,548,413	+		GFF1518	0.43	-0.3
1,548,413	+		GFF1518	0.43	+0.4
1,548,413	+		GFF1518	0.43	+0.8
1,548,413	+		GFF1518	0.43	-1.1
1,548,413	+		GFF1518	0.43	+0.7
1,548,413	+		GFF1518	0.43	-0.1
1,548,415	+		GFF1518	0.43	+0.7
1,548,421	-		GFF1518	0.44	-0.1
1,548,421	-		GFF1518	0.44	-1.4
1,548,421	-		GFF1518	0.44	+1.0
1,548,421	-		GFF1518	0.44	+0.6
1,548,423	-		GFF1518	0.44	-0.5
1,548,423	-		GFF1518	0.44	+0.1
1,548,423	-		GFF1518	0.44	-1.1
1,548,423	-		GFF1518	0.44	-1.1
1,548,427	+		GFF1518	0.45	-2.2
1,548,432	+		GFF1518	0.45	+1.0
1,548,432	+		GFF1518	0.45	-0.8
1,548,433	-		GFF1518	0.45	+0.1
1,548,433	-		GFF1518	0.45	+1.4
1,548,440	-		GFF1518	0.46	-0.4
1,548,440	-		GFF1518	0.46	+0.3
1,548,440	-		GFF1518	0.46	-0.0
1,548,440	-		GFF1518	0.46	-1.4
1,548,440	-		GFF1518	0.46	-1.5
1,548,440	-		GFF1518	0.46	-1.0
1,548,440	-		GFF1518	0.46	+0.3
1,548,440	-		GFF1518	0.46	+1.6
1,548,448	-		GFF1518	0.47	+0.6
1,548,449	+		GFF1518	0.47	-2.1
1,548,453	-		GFF1518	0.48	+1.0
1,548,459	+		GFF1518	0.48	-1.8
1,548,464	+		GFF1518	0.49	-0.1
1,548,467	-		GFF1518	0.49	-1.0
1,548,482	-		GFF1518	0.51	-0.8
1,548,508	+		GFF1518	0.54	+0.7
1,548,515	-		GFF1518	0.55	-0.1
1,548,518	-		GFF1518	0.55	-0.3
1,548,537	+		GFF1518	0.57	-0.4
1,548,546	+		GFF1518	0.58	+0.7
1,548,547	+		GFF1518	0.59	-1.3
1,548,582	+		GFF1518	0.63	-1.4
1,548,582	+		GFF1518	0.63	-1.6
1,548,582	+		GFF1518	0.63	-1.6
1,548,582	+		GFF1518	0.63	+0.0
1,548,585	-		GFF1518	0.63	+0.1
1,548,587	+		GFF1518	0.63	+0.9
1,548,590	-		GFF1518	0.64	-0.5
1,548,590	-		GFF1518	0.64	+0.2
1,548,590	-		GFF1518	0.64	+0.7
1,548,590	-		GFF1518	0.64	+0.8
1,548,590	-		GFF1518	0.64	-0.6
1,548,590	-		GFF1518	0.64	+0.4
1,548,590	-		GFF1518	0.64	+0.2
1,548,590	-		GFF1518	0.64	+1.2
1,548,590	-		GFF1518	0.64	-0.1
1,548,590	-		GFF1518	0.64	-1.9
1,548,590	-		GFF1518	0.64	-1.8
1,548,590	-		GFF1518	0.64	-1.5
1,548,653	-		GFF1518	0.71	+0.2
1,548,656	+		GFF1518	0.71	-0.3
1,548,668	-		GFF1518	0.73	-0.4
1,548,679	-		GFF1518	0.74	-1.1
1,548,680	-		GFF1518	0.74	+0.5
1,548,682	-		GFF1518	0.74	-1.6
1,548,687	-		GFF1518	0.75	-1.2
1,548,703	-		GFF1518	0.77	-0.3
1,548,703	-		GFF1518	0.77	-0.1
1,548,705	+		GFF1518	0.77	-0.1
1,548,705	+		GFF1518	0.77	-1.0
1,548,709	+		GFF1518	0.77	-1.8
1,548,713	-		GFF1518	0.78	+0.6
1,548,713	-		GFF1518	0.78	-0.3
1,548,713	-		GFF1518	0.78	-1.8
1,548,713	-		GFF1518	0.78	-2.3
1,548,722	-		GFF1518	0.79	-0.4
1,548,724	+		GFF1518	0.79	-0.0
1,548,748	+		GFF1518	0.82	+1.2
1,548,762	-		GFF1518	0.83	+1.3
1,548,769	+		GFF1518	0.84	-1.4
1,548,772	+		GFF1518	0.85	-2.3
1,548,778	+		GFF1518	0.85	-0.5
1,548,778	+		GFF1518	0.85	-0.6
1,548,786	-		GFF1518	0.86	-1.0
1,548,786	-		GFF1518	0.86	+1.4
1,548,792	+		GFF1518	0.87	-0.8
1,548,792	+		GFF1518	0.87	+1.2
1,548,800	-		GFF1518	0.88	-1.8
1,548,800	-		GFF1518	0.88	-1.3
1,548,800	-		GFF1518	0.88	-1.4
1,548,802	+		GFF1518	0.88	-0.8
1,548,828	-				-0.5
1,548,837	-				+0.1
1,548,870	+				-0.2
1,548,870	+				+0.5
1,548,870	+				+1.3
1,548,870	+				+0.6
1,548,870	+				-0.9
1,548,870	+				-0.4
1,548,870	+				-0.0
1,548,870	+				-0.2
1,548,878	-				-0.5
1,548,878	-				-2.3
1,548,878	-				+0.9
1,548,878	-				+0.3
1,548,878	-				-1.5
1,548,878	-				+0.0
1,548,878	-				-0.3
1,548,884	+				+0.3
1,548,892	-				+0.2
1,548,892	-				-1.6
1,548,915	+				+0.4
1,548,922	+				-0.3
1,548,924	-				+0.3
1,548,950	-				-0.8
1,548,981	+				+0.2
1,548,984	-				-0.9
1,548,984	-				-0.3
1,548,986	+				-1.6
1,548,986	+				-1.7
1,548,986	+				-0.7
1,548,986	+				+0.6
1,548,986	+				-2.1
1,548,986	+				-0.8
1,548,986	+				+1.0
1,548,986	+				-3.3
1,548,986	+				+0.6
1,548,986	+				-0.9
1,548,986	+				-0.4
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