Strain Fitness in Sphingobium sp. HT1-2 around GFF1458

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,485,273	-		GFF1456	0.72	-0.9
1,485,273	-		GFF1456	0.72	-0.1
1,485,273	-		GFF1456	0.72	+0.4
1,485,289	+		GFF1456	0.73	+1.4
1,485,297	-		GFF1456	0.73	-0.9
1,485,303	-		GFF1456	0.74	-1.8
1,485,326	+		GFF1456	0.75	+0.1
1,485,326	+		GFF1456	0.75	+0.1
1,485,326	+		GFF1456	0.75	+0.6
1,485,326	+		GFF1456	0.75	+0.5
1,485,326	+		GFF1456	0.75	-0.7
1,485,334	-		GFF1456	0.75	+0.2
1,485,334	-		GFF1456	0.75	-1.4
1,485,334	-		GFF1456	0.75	-0.5
1,485,334	-		GFF1456	0.75	+0.5
1,485,334	-		GFF1456	0.75	-0.7
1,485,334	-		GFF1456	0.75	+1.4
1,485,339	-		GFF1456	0.76	+0.1
1,485,347	+		GFF1456	0.76	-2.0
1,485,352	+		GFF1456	0.76	-2.2
1,485,352	+		GFF1456	0.76	-0.3
1,485,355	-		GFF1456	0.76	+1.4
1,485,355	-		GFF1456	0.76	-0.2
1,485,360	-		GFF1456	0.77	-0.6
1,485,360	-		GFF1456	0.77	-1.7
1,485,360	-		GFF1456	0.77	-1.7
1,485,379	+		GFF1456	0.78	-1.9
1,485,399	+		GFF1456	0.79	+0.8
1,485,404	+		GFF1456	0.79	-0.0
1,485,413	-		GFF1456	0.80	-0.3
1,485,455	+		GFF1456	0.82	-0.0
1,485,455	+		GFF1456	0.82	+0.2
1,485,463	-		GFF1456	0.82	-1.1
1,485,486	+		GFF1456	0.83	-1.3
1,485,494	-		GFF1456	0.84	-0.3
1,485,494	-		GFF1456	0.84	-0.9
1,485,494	-		GFF1456	0.84	+0.7
1,485,555	+		GFF1456	0.87	+0.8
1,485,560	+		GFF1456	0.87	+1.4
1,485,561	-		GFF1456	0.87	+0.2
1,485,595	+		GFF1456	0.89	-1.7
1,485,595	+		GFF1456	0.89	-0.5
1,485,595	+		GFF1456	0.89	-0.1
1,485,603	-		GFF1456	0.90	-1.5
1,485,608	+		GFF1456	0.90	+0.2
1,485,613	+				+0.1
1,485,616	-				+0.9
1,485,621	-				+1.1
1,485,633	+				-0.4
1,485,638	+				-0.3
1,485,643	+				+0.8
1,485,646	-				-0.9
1,485,648	+				-3.2
1,485,649	+				+0.8
1,485,651	-				+0.1
1,485,657	-				-1.6
1,485,661	-				-0.9
1,485,663	-				+1.2
1,485,680	+				-1.1
1,485,680	+				+1.8
1,485,680	+				+0.3
1,485,680	+				-1.8
1,485,687	-				+0.4
1,485,688	-				+1.4
1,485,688	-				+0.8
1,485,688	-				+0.7
1,485,688	-				+0.4
1,485,688	-				-1.2
1,485,688	-				+0.3
1,485,695	-				-0.3
1,485,697	-				-1.0
1,485,708	+				+0.5
1,485,724	+				-0.3
1,485,724	+				+0.3
1,485,724	+				-2.8
1,485,724	+				+0.5
1,485,732	-				-0.3
1,485,732	-				-1.6
1,485,732	-				+0.6
1,485,736	+				+0.2
1,485,769	-				-0.7
1,485,778	+				-0.3
1,485,784	-				-2.4
1,485,822	+				-0.3
1,485,830	-				+0.3
1,485,830	-				+0.4
1,485,832	+				+0.6
1,485,840	-				-1.0
1,485,862	+				+0.5
1,485,865	-				+1.0
1,485,865	-				+0.1
1,485,865	-				-0.1
1,485,865	-				+1.1
1,485,894	-		GFF1457	0.14	-1.6
1,485,895	-		GFF1457	0.14	-0.4
1,485,895	-		GFF1457	0.14	+0.1
1,485,895	-		GFF1457	0.14	-0.1
1,485,895	-		GFF1457	0.14	-1.3
1,485,895	-		GFF1457	0.14	+0.4
1,485,895	-		GFF1457	0.14	+1.3
1,485,910	+		GFF1457	0.18	-0.0
1,485,910	+		GFF1457	0.18	-0.6
1,485,910	+		GFF1457	0.18	+0.5
1,485,910	+		GFF1457	0.18	-1.5
1,485,910	+		GFF1457	0.18	+0.4
1,485,910	+		GFF1457	0.18	-0.1
1,485,918	-		GFF1457	0.20	+0.8
1,485,924	+		GFF1457	0.21	-0.3
1,485,957	+		GFF1457	0.30	+0.1
1,485,997	+		GFF1457	0.40	+0.1
1,486,004	+		GFF1457	0.42	-0.3
1,486,005	-		GFF1457	0.42	+0.8
1,486,026	+		GFF1457	0.47	-1.3
1,486,051	+		GFF1457	0.54	-0.7
1,486,056	+		GFF1457	0.55	-1.3
1,486,064	-		GFF1457	0.57	-0.4
1,486,068	-		GFF1457	0.58	+0.2
1,486,086	+		GFF1457	0.62	-0.8
1,486,139	+		GFF1457	0.76	-1.5
1,486,148	-		GFF1457	0.78	+0.6
1,486,191	+		GFF1457	0.89	+0.7
1,486,191	+		GFF1457	0.89	-1.9
1,486,199	-				-0.8
1,486,233	+				-0.4
1,486,233	+				-0.7
1,487,786	-				+0.3
1,487,795	+				-0.0
1,487,795	+				-2.3
1,487,795	+				-0.1
1,487,801	+				+2.1
1,487,801	+				+0.1
1,487,803	-				-0.3
1,487,803	-				-0.5
1,487,809	-				-0.6
1,487,856	+				+0.8
1,487,863	+				-0.0
1,487,868	+				-0.4
1,487,868	+				-0.3
1,487,871	-				-0.3
1,487,876	-				-1.4
1,487,876	-				-0.1
1,487,876	-				-2.3
1,487,904	+				-1.1
1,487,905	-				-2.4
1,487,909	+				-0.1
1,487,924	+				-0.0
1,487,926	+				-2.3
1,487,934	+		GFF1459	0.11	+0.8
1,487,939	+		GFF1459	0.12	+2.1
1,487,982	+		GFF1459	0.21	-2.0
1,488,020	-		GFF1459	0.29	-0.1
1,488,039	+		GFF1459	0.33	-0.4
1,488,039	+		GFF1459	0.33	+2.5
1,488,039	+		GFF1459	0.33	+0.0
1,488,039	+		GFF1459	0.33	+1.2
1,488,041	+		GFF1459	0.33	-0.0
1,488,041	+		GFF1459	0.33	+0.6
1,488,042	-		GFF1459	0.33	+0.4
1,488,046	-		GFF1459	0.34	-0.5
1,488,047	-		GFF1459	0.34	+1.2
1,488,047	-		GFF1459	0.34	-1.1
1,488,047	-		GFF1459	0.34	+1.2
1,488,047	-		GFF1459	0.34	+0.9
1,488,121	+		GFF1459	0.50	+0.3
1,488,122	+		GFF1459	0.50	-1.6
1,488,122	+		GFF1459	0.50	-0.8
1,488,122	+		GFF1459	0.50	-0.4
1,488,122	+		GFF1459	0.50	+1.3
1,488,127	+		GFF1459	0.51	-0.5
1,488,179	+		GFF1459	0.62	-0.7
1,488,185	-		GFF1459	0.63	-1.9
1,488,197	+		GFF1459	0.65	-0.4
1,488,197	+		GFF1459	0.65	-0.1
1,488,201	+		GFF1459	0.66	+0.4
1,488,209	-		GFF1459	0.68	-0.3
1,488,216	+		GFF1459	0.69	-0.8
1,488,224	+		GFF1459	0.71	-0.6
1,488,224	-		GFF1459	0.71	+0.2
1,488,224	-		GFF1459	0.71	+0.5
1,488,224	-		GFF1459	0.71	-0.1
1,488,233	+		GFF1459	0.73	+0.2
1,488,235	+		GFF1459	0.73	-0.3
1,488,252	+		GFF1459	0.77	+0.6
1,488,269	+		GFF1459	0.80	+0.1
1,488,277	-		GFF1459	0.82	-0.4
1,488,304	+		GFF1459	0.88	+0.6
1,488,309	-		GFF1459	0.89	-0.4
1,488,327	+				-1.3
1,488,327	+				-0.5
1,488,335	-				-1.7
1,488,335	-				-1.1
1,488,367	+				+0.6
1,488,402	+				-1.3
1,488,431	+				+0.3
1,488,438	+				-0.2
1,488,438	+				+0.2
1,488,444	-				-1.7
1,488,444	-				-1.5
1,488,446	-				-0.8
1,488,446	-				+0.1
1,488,454	-				-1.1
1,488,494	+		GFF1460	0.10	-0.5
1,488,508	+		GFF1460	0.13	-2.2
1,488,514	+		GFF1460	0.14	-0.6
1,488,522	-		GFF1460	0.15	-1.9
1,488,592	-		GFF1460	0.26	-1.1
1,488,650	-		GFF1460	0.35	-0.8
1,488,665	+		GFF1460	0.37	+0.3
1,488,665	+		GFF1460	0.37	-0.6
1,488,665	+		GFF1460	0.37	-1.3
1,488,665	+		GFF1460	0.37	-1.4
1,488,670	+		GFF1460	0.38	-0.3
1,488,670	+		GFF1460	0.38	-1.8
1,488,670	+		GFF1460	0.38	-1.1
1,488,672	+		GFF1460	0.39	-2.7
1,488,672	+		GFF1460	0.39	-1.8
1,488,673	-		GFF1460	0.39	+0.7
1,488,678	-		GFF1460	0.39	-1.3
1,488,678	-		GFF1460	0.39	-0.4
1,488,680	-		GFF1460	0.40	+0.2
1,488,680	-		GFF1460	0.40	-1.4
1,488,707	+		GFF1460	0.44	-1.3
1,488,712	+		GFF1460	0.45	-0.4
1,488,748	+		GFF1460	0.51	+0.3
1,488,748	+		GFF1460	0.51	-0.1
1,488,748	+		GFF1460	0.51	-1.8
1,488,748	+		GFF1460	0.51	-1.3
1,488,753	+		GFF1460	0.51	-2.1
1,488,756	-		GFF1460	0.52	+0.3