Strain Fitness in Sphingobium sp. HT1-2 around GFF1455

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,481,026	+		GFF1453	0.85	+0.7
1,481,030	-		GFF1453	0.86	+1.6
1,481,053	-				+0.8
1,481,055	+				-0.2
1,481,121	+				-1.3
1,481,142	+				-1.9
1,481,190	+				-1.3
1,481,215	-		GFF1454	0.12	-1.5
1,481,215	-		GFF1454	0.12	-2.7
1,481,215	-		GFF1454	0.12	-0.4
1,481,227	-		GFF1454	0.14	-1.1
1,481,273	+		GFF1454	0.20	-2.0
1,481,305	-		GFF1454	0.24	-0.7
1,481,402	+		GFF1454	0.37	-2.2
1,481,415	+		GFF1454	0.38	-1.1
1,481,436	-		GFF1454	0.41	-2.3
1,481,438	+		GFF1454	0.41	-1.4
1,481,446	-		GFF1454	0.42	-1.3
1,481,462	+		GFF1454	0.45	-1.3
1,481,467	+		GFF1454	0.45	+0.9
1,481,470	-		GFF1454	0.46	-0.9
1,481,475	-		GFF1454	0.46	-1.7
1,481,513	+		GFF1454	0.51	-1.1
1,481,626	-		GFF1454	0.66	-1.7
1,481,626	-		GFF1454	0.66	-1.1
1,481,653	-		GFF1454	0.70	-1.3
1,481,653	-		GFF1454	0.70	+0.3
1,481,714	-		GFF1454	0.78	-1.8
1,481,728	+		GFF1454	0.80	-1.7
1,481,736	-		GFF1454	0.81	-1.4
1,481,769	-		GFF1454	0.85	-1.4
1,481,791	+		GFF1454	0.88	-1.4
1,481,838	-				-0.4
1,481,856	-				+0.7
1,481,860	+				-0.7
1,481,868	-				+0.3
1,481,875	+				-0.3
1,481,907	+				-0.9
1,481,953	+				+0.4
1,481,953	+				+1.1
1,481,955	-				-0.4
1,481,961	-				+0.7
1,481,961	-				+0.4
1,481,965	+				+0.4
1,481,975	+				+0.7
1,481,975	+				-2.1
1,481,975	+				-1.4
1,481,977	+				-0.3
1,481,983	-				-1.7
1,481,983	-				-1.0
1,481,983	-				+0.7
1,481,983	-				+0.2
1,481,984	+				-0.5
1,481,985	-				-2.1
1,481,992	-				+0.1
1,481,997	-				+0.0
1,482,012	+				-0.4
1,482,012	-				+0.5
1,482,085	+				+1.2
1,482,098	-				-1.6
1,482,111	+				-1.4
1,482,121	-				-0.5
1,482,132	+				-0.9
1,482,140	-				+1.1
1,482,155	+				+0.6
1,482,155	+				-2.9
1,482,155	+				-0.6
1,482,155	+				+0.7
1,482,186	-				-1.5
1,482,191	+				-0.0
1,482,195	+				-0.2
1,482,222	+		GFF1455	0.11	-0.9
1,482,248	-		GFF1455	0.12	-0.4
1,482,287	-		GFF1455	0.15	-0.6
1,482,294	+		GFF1455	0.15	+0.7
1,482,302	-		GFF1455	0.15	-1.0
1,482,302	-		GFF1455	0.15	+0.2
1,482,302	-		GFF1455	0.15	-3.0
1,482,302	-		GFF1455	0.15	+0.2
1,482,302	-		GFF1455	0.15	-1.2
1,482,302	-		GFF1455	0.15	+1.0
1,482,302	-		GFF1455	0.15	+0.2
1,482,309	-		GFF1455	0.16	+1.2
1,482,309	-		GFF1455	0.16	+0.8
1,482,311	+		GFF1455	0.16	+0.1
1,482,317	+		GFF1455	0.16	+0.3
1,482,321	+		GFF1455	0.17	+0.7
1,482,335	+		GFF1455	0.17	+1.0
1,482,342	+		GFF1455	0.18	-2.4
1,482,349	-		GFF1455	0.18	+0.3
1,482,349	-		GFF1455	0.18	-0.4
1,482,367	+		GFF1455	0.19	+0.2
1,482,387	+		GFF1455	0.20	-0.8
1,482,397	+		GFF1455	0.21	-0.6
1,482,415	-		GFF1455	0.22	+0.4
1,482,436	-		GFF1455	0.23	-0.3
1,482,436	-		GFF1455	0.23	+0.0
1,482,466	+		GFF1455	0.25	-0.3
1,482,468	+		GFF1455	0.25	-1.3
1,482,476	-		GFF1455	0.25	-1.8
1,482,478	+		GFF1455	0.25	-0.5
1,482,485	+		GFF1455	0.26	-0.9
1,482,510	+		GFF1455	0.27	-0.6
1,482,510	+		GFF1455	0.27	-0.1
1,482,510	+		GFF1455	0.27	+0.3
1,482,510	+		GFF1455	0.27	+0.2
1,482,523	-		GFF1455	0.28	-1.1
1,482,533	-		GFF1455	0.28	+0.1
1,482,539	+		GFF1455	0.29	-0.1
1,482,539	+		GFF1455	0.29	-0.1
1,482,539	+		GFF1455	0.29	-0.8
1,482,560	-		GFF1455	0.30	+1.3
1,482,573	+		GFF1455	0.30	-1.2
1,482,573	+		GFF1455	0.30	-2.5
1,482,617	+		GFF1455	0.33	-0.1
1,482,617	+		GFF1455	0.33	-0.9
1,482,617	+		GFF1455	0.33	-0.6
1,482,625	-		GFF1455	0.33	-0.9
1,482,625	-		GFF1455	0.33	-0.1
1,482,671	+		GFF1455	0.36	-0.4
1,482,671	+		GFF1455	0.36	-2.0
1,482,671	+		GFF1455	0.36	-1.1
1,482,679	-		GFF1455	0.36	-0.0
1,482,679	-		GFF1455	0.36	-1.0
1,482,693	-		GFF1455	0.37	-0.1
1,482,695	-		GFF1455	0.37	-1.3
1,482,702	+		GFF1455	0.38	-0.6
1,482,702	+		GFF1455	0.38	-1.5
1,482,702	+		GFF1455	0.38	-1.8
1,482,708	+		GFF1455	0.38	-0.8
1,482,710	-		GFF1455	0.38	+0.4
1,482,716	-		GFF1455	0.38	-0.2
1,482,716	-		GFF1455	0.38	-0.6
1,482,716	-		GFF1455	0.38	-1.9
1,482,716	-		GFF1455	0.38	-1.4
1,482,725	+		GFF1455	0.39	+1.0
1,482,725	+		GFF1455	0.39	-0.4
1,482,733	-		GFF1455	0.39	-1.7
1,482,738	-		GFF1455	0.40	-1.3
1,482,807	+		GFF1455	0.43	-1.1
1,482,807	-		GFF1455	0.43	+0.4
1,482,815	-		GFF1455	0.44	-0.0
1,482,816	-		GFF1455	0.44	-0.7
1,482,830	+		GFF1455	0.45	+0.3
1,482,832	+		GFF1455	0.45	-1.9
1,482,834	+		GFF1455	0.45	-0.1
1,482,866	-		GFF1455	0.47	-0.4
1,482,890	+		GFF1455	0.48	-0.7
1,482,890	+		GFF1455	0.48	+0.2
1,482,890	+		GFF1455	0.48	+0.7
1,482,890	+		GFF1455	0.48	-1.4
1,482,890	+		GFF1455	0.48	-0.6
1,482,890	+		GFF1455	0.48	-1.7
1,482,890	+		GFF1455	0.48	-0.6
1,482,890	+		GFF1455	0.48	-0.9
1,482,890	+		GFF1455	0.48	-1.0
1,482,890	+		GFF1455	0.48	-0.1
1,482,890	+		GFF1455	0.48	+0.9
1,482,897	+		GFF1455	0.48	+0.2
1,482,897	+		GFF1455	0.48	-1.1
1,482,897	+		GFF1455	0.48	+0.6
1,482,897	+		GFF1455	0.48	-0.4
1,482,897	+		GFF1455	0.48	-0.4
1,482,897	+		GFF1455	0.48	-1.1
1,482,897	+		GFF1455	0.48	+0.6
1,482,897	+		GFF1455	0.48	-0.7
1,482,897	+		GFF1455	0.48	+1.7
1,482,897	+		GFF1455	0.48	+0.3
1,482,897	+		GFF1455	0.48	-0.2
1,482,897	+		GFF1455	0.48	-0.3
1,482,897	+		GFF1455	0.48	-0.4
1,482,897	+		GFF1455	0.48	-1.8
1,482,897	+		GFF1455	0.48	-0.0
1,482,898	-		GFF1455	0.48	-0.1
1,482,898	-		GFF1455	0.48	+0.2
1,482,898	-		GFF1455	0.48	-1.1
1,482,898	-		GFF1455	0.48	+0.1
1,482,898	-		GFF1455	0.48	-0.7
1,482,898	-		GFF1455	0.48	-0.8
1,482,898	-		GFF1455	0.48	-0.4
1,482,898	-		GFF1455	0.48	+0.5
1,482,898	-		GFF1455	0.48	-1.1
1,482,898	-		GFF1455	0.48	+1.0
1,482,898	-		GFF1455	0.48	-0.5
1,482,902	+		GFF1455	0.49	-1.8
1,482,905	-		GFF1455	0.49	+0.8
1,482,905	-		GFF1455	0.49	-0.0
1,482,905	-		GFF1455	0.49	-1.3
1,482,905	-		GFF1455	0.49	-0.1
1,482,905	-		GFF1455	0.49	-1.3
1,482,905	-		GFF1455	0.49	+0.3
1,482,905	-		GFF1455	0.49	-2.4
1,482,905	-		GFF1455	0.49	+1.3
1,482,912	+		GFF1455	0.49	+1.6
1,482,920	+		GFF1455	0.50	+1.1
1,482,926	+		GFF1455	0.50	+0.2
1,482,933	-		GFF1455	0.50	+0.3
1,482,950	+		GFF1455	0.51	-1.3
1,482,953	-		GFF1455	0.51	+0.9
1,482,955	+		GFF1455	0.51	+1.5
1,482,964	-		GFF1455	0.52	-2.1
1,482,969	-		GFF1455	0.52	-0.1
1,482,975	-		GFF1455	0.53	-1.5
1,482,982	+		GFF1455	0.53	-0.4
1,482,988	+		GFF1455	0.53	+0.3
1,482,988	+		GFF1455	0.53	-1.1
1,482,993	+		GFF1455	0.54	+0.4
1,482,993	+		GFF1455	0.54	+0.1
1,482,996	-		GFF1455	0.54	-1.6
1,483,001	-		GFF1455	0.54	-0.8
1,483,028	-		GFF1455	0.56	+0.2
1,483,036	+		GFF1455	0.56	+0.4
1,483,041	+		GFF1455	0.56	-1.1
1,483,041	+		GFF1455	0.56	-0.9
1,483,049	-		GFF1455	0.57	-0.5
1,483,049	-		GFF1455	0.57	-0.3
1,483,049	-		GFF1455	0.57	-1.3
1,483,049	-		GFF1455	0.57	-0.3
1,483,072	+		GFF1455	0.58	+0.7
1,483,086	+		GFF1455	0.59	-0.1
1,483,112	+		GFF1455	0.60	-1.3
1,483,112	+		GFF1455	0.60	+1.3
1,483,113	+		GFF1455	0.60	-1.9
1,483,130	-		GFF1455	0.61	-1.1
1,483,130	-		GFF1455	0.61	+0.9
1,483,130	-		GFF1455	0.61	-0.4
1,483,131	+		GFF1455	0.61	-2.1
1,483,138	+		GFF1455	0.62	-2.7
1,483,139	-		GFF1455	0.62	-1.8
1,483,143	+		GFF1455	0.62	+0.1
1,483,145	+		GFF1455	0.62	-0.7
1,483,151	-		GFF1455	0.62	-0.8
1,483,153	-		GFF1455	0.62	-0.6
1,483,153	-		GFF1455	0.62	+0.4
1,483,171	+		GFF1455	0.63	-0.7
1,483,191	-		GFF1455	0.65	-0.3
1,483,215	-		GFF1455	0.66	+0.7
1,483,230	-		GFF1455	0.67	+0.6
1,483,232	+		GFF1455	0.67	-2.1
1,483,260	+		GFF1455	0.68	-0.4
1,483,260	+		GFF1455	0.68	+0.7
1,483,267	-		GFF1455	0.69	-0.8
1,483,268	-		GFF1455	0.69	+0.6
1,483,303	-		GFF1455	0.71	+0.5
1,483,305	+		GFF1455	0.71	+0.1
1,483,318	-		GFF1455	0.72	+0.2
1,483,328	+		GFF1455	0.72	+0.1
1,483,328	+		GFF1455	0.72	-0.6
1,483,335	+		GFF1455	0.72	-3.6
1,483,341	+		GFF1455	0.73	-0.3
1,483,341	+		GFF1455	0.73	-3.1
1,483,343	-		GFF1455	0.73	+0.1
1,483,349	-		GFF1455	0.73	+0.2
1,483,349	-		GFF1455	0.73	+0.6
1,483,351	+		GFF1455	0.73	-0.0
1,483,359	-		GFF1455	0.74	-1.6
1,483,380	+		GFF1455	0.75	-0.7
1,483,380	+		GFF1455	0.75	-2.0
1,483,388	-		GFF1455	0.75	+0.1
1,483,388	-		GFF1455	0.75	-0.4
1,483,398	-		GFF1455	0.76	-0.4
1,483,408	+		GFF1455	0.76	+0.9
1,483,408	+		GFF1455	0.76	+0.3
1,483,408	+		GFF1455	0.76	+0.1
1,483,408	+		GFF1455	0.76	+0.7
1,483,408	+		GFF1455	0.76	+0.2
1,483,414	-		GFF1455	0.77	+0.5
1,483,416	-		GFF1455	0.77	-0.0
1,483,416	-		GFF1455	0.77	+0.2
1,483,418	+		GFF1455	0.77	+0.1
1,483,422	+		GFF1455	0.77	-0.2
1,483,422	+		GFF1455	0.77	-0.3
1,483,423	-		GFF1455	0.77	-1.7
1,483,435	-		GFF1455	0.78	-1.9
1,483,460	-		GFF1455	0.79	-1.7
1,483,484	+		GFF1455	0.81	-0.1
1,483,489	+		GFF1455	0.81	-0.1
1,483,492	-		GFF1455	0.81	-0.9
1,483,497	-		GFF1455	0.81	-0.7
1,483,503	+		GFF1455	0.82	-0.7
1,483,532	+		GFF1455	0.83	-1.7
1,483,541	+		GFF1455	0.84	-1.3
1,483,541	+		GFF1455	0.84	-0.7
1,483,546	+		GFF1455	0.84	-0.6
1,483,549	-		GFF1455	0.84	+0.4
1,483,551	+		GFF1455	0.84	+0.9
1,483,554	-		GFF1455	0.85	-0.4
1,483,554	-		GFF1455	0.85	-0.6
1,483,556	+		GFF1455	0.85	+0.2
1,483,559	-		GFF1455	0.85	-1.6
1,483,580	+		GFF1455	0.86	+0.3
1,483,582	+		GFF1455	0.86	+0.2
1,483,582	+		GFF1455	0.86	+0.2
1,483,590	-		GFF1455	0.87	-0.6
1,483,590	-		GFF1455	0.87	-1.2
1,483,595	+		GFF1455	0.87	+0.9
1,483,595	+		GFF1455	0.87	-1.4
1,483,598	-		GFF1455	0.87	-0.1
1,483,598	-		GFF1455	0.87	+0.6
1,483,624	+		GFF1455	0.88	-1.2
1,483,634	+		GFF1455	0.89	-0.0
1,483,637	+		GFF1455	0.89	-1.3
1,483,642	-		GFF1455	0.89	+1.8
1,483,651	-		GFF1455	0.90	+0.1
1,483,661	-				-1.0
1,483,662	+				-1.1
1,483,685	+				+0.6
1,483,693	-				+0.3
1,483,728	+				+0.5
1,483,743	+				-1.8
1,483,743	+				-2.7
1,483,751	-				+0.3
1,483,751	-				+0.1
1,483,751	-				-0.5
1,483,751	-				+0.6
1,483,751	-				+0.5
1,483,835	-				-0.1
1,483,839	-				-0.8
1,483,846	-				-1.2
1,483,846	-				-0.0
1,483,846	-				-1.8
1,483,847	+				-0.6
1,483,847	+				-0.8
1,483,860	-				-2.0
1,483,865	+				+0.6
1,483,865	+				-0.0
1,483,867	-				-0.1
1,483,900	-				-0.6
1,483,912	+				+0.5
1,483,913	-				-0.5
1,483,920	-				-1.8
1,483,927	+				-0.1
1,483,927	+				-0.1
1,483,935	-				-0.7
1,483,935	-				-1.3
1,483,945	+				-0.1
1,483,976	+				+0.2
1,483,976	+				+0.2
1,483,976	+				-1.1
1,483,976	+				-1.5
1,483,984	-				-0.6
1,483,985	+				-1.6
1,483,988	-				-1.4
1,483,995	+				-1.5
1,484,003	-				-0.7
1,484,003	-				-0.4
1,484,003	-				-0.8
1,484,021	-				-1.1
1,484,035	+				-2.2
1,484,055	-				-0.5
1,484,079	+				+0.5
1,484,084	+				-0.3
1,484,086	+				-0.2
1,484,087	-				+0.4
1,484,087	-				-2.1
1,484,087	-				-0.2
1,484,087	-				-0.5
1,484,089	+				-0.5
1,484,089	-				-2.6
1,484,094	-				-1.1
1,484,121	+		GFF1456	0.11	-0.7
1,484,121	+		GFF1456	0.11	-0.5
1,484,121	+		GFF1456	0.11	+0.2
1,484,121	+		GFF1456	0.11	-0.5
1,484,121	+		GFF1456	0.11	-1.3
1,484,121	+		GFF1456	0.11	-1.3
1,484,121	+		GFF1456	0.11	+0.5
1,484,121	+		GFF1456	0.11	-0.0
1,484,121	+		GFF1456	0.11	-2.1
1,484,129	-		GFF1456	0.12	+0.4
1,484,129	-		GFF1456	0.12	-0.7
1,484,129	-		GFF1456	0.12	-0.3
1,484,129	-		GFF1456	0.12	+0.6
1,484,129	-		GFF1456	0.12	+0.8
1,484,135	+		GFF1456	0.12	-0.5
1,484,143	-		GFF1456	0.12	-0.4
1,484,148	-		GFF1456	0.13	+0.5
1,484,151	+		GFF1456	0.13	-0.4
1,484,151	+		GFF1456	0.13	-0.5
1,484,164	-		GFF1456	0.13	-0.0
1,484,170	-		GFF1456	0.14	+0.2
1,484,176	+		GFF1456	0.14	+0.7
1,484,215	+		GFF1456	0.16	-0.0
1,484,220	-		GFF1456	0.16	-0.1
1,484,247	-		GFF1456	0.18	-0.0
1,484,256	+		GFF1456	0.18	-2.3
1,484,256	+		GFF1456	0.18	+0.4
1,484,264	-		GFF1456	0.19	-1.1
1,484,264	-		GFF1456	0.19	+0.3
1,484,270	+		GFF1456	0.19	+0.2
1,484,271	+		GFF1456	0.19	-0.3
1,484,275	+		GFF1456	0.19	-1.4
1,484,280	+		GFF1456	0.20	-2.0
1,484,297	+		GFF1456	0.20	+0.6
1,484,297	+		GFF1456	0.20	-0.9
1,484,297	+		GFF1456	0.20	-2.4
1,484,297	+		GFF1456	0.20	-0.4
1,484,297	+		GFF1456	0.20	+0.7
1,484,297	+		GFF1456	0.20	-0.4
1,484,297	+		GFF1456	0.20	-0.3
1,484,297	+		GFF1456	0.20	+0.3
1,484,299	+		GFF1456	0.21	+0.6
1,484,305	-		GFF1456	0.21	+0.8
1,484,305	-		GFF1456	0.21	+0.1
1,484,305	-		GFF1456	0.21	+1.1
1,484,305	-		GFF1456	0.21	+0.2
1,484,305	-		GFF1456	0.21	+2.0
1,484,305	-		GFF1456	0.21	-1.0
1,484,305	-		GFF1456	0.21	-2.3
1,484,305	-		GFF1456	0.21	-0.3
1,484,305	-		GFF1456	0.21	+0.1
1,484,314	+		GFF1456	0.21	-0.1
1,484,339	+		GFF1456	0.23	-0.0
1,484,339	+		GFF1456	0.23	-0.6
1,484,339	+		GFF1456	0.23	-0.9
1,484,344	-		GFF1456	0.23	-1.6
1,484,347	-		GFF1456	0.23	-0.4
1,484,349	+		GFF1456	0.23	-0.3
1,484,366	-		GFF1456	0.24	-0.5
1,484,373	+		GFF1456	0.24	-1.3
1,484,380	+		GFF1456	0.25	+0.2
1,484,392	+		GFF1456	0.26	-0.4
1,484,456	-		GFF1456	0.29	-1.4
1,484,475	-		GFF1456	0.30	-0.9
1,484,485	-		GFF1456	0.30	-0.6
1,484,485	-		GFF1456	0.30	-1.6
1,484,487	+		GFF1456	0.31	+0.6
1,484,492	+		GFF1456	0.31	-1.1
1,484,533	-		GFF1456	0.33	-0.1
1,484,579	-		GFF1456	0.35	-1.0
1,484,585	-		GFF1456	0.36	+0.3
1,484,589	+		GFF1456	0.36	-0.1
1,484,599	-		GFF1456	0.36	-0.4
1,484,612	+		GFF1456	0.37	+0.5
1,484,615	-		GFF1456	0.37	+0.0
1,484,620	+		GFF1456	0.38	+0.4
1,484,620	+		GFF1456	0.38	-1.1
1,484,620	-		GFF1456	0.38	-2.1
1,484,620	-		GFF1456	0.38	-1.6
1,484,628	-		GFF1456	0.38	+0.6
1,484,640	+		GFF1456	0.39	-1.5
1,484,682	+		GFF1456	0.41	+1.2
1,484,690	-		GFF1456	0.41	-0.2
1,484,690	-		GFF1456	0.41	+0.6
1,484,710	+		GFF1456	0.42	-1.9
1,484,726	+		GFF1456	0.43	+0.4
1,484,748	+		GFF1456	0.44	-0.2
1,484,748	+		GFF1456	0.44	-0.4
1,484,778	-		GFF1456	0.46	-1.3
1,484,784	-		GFF1456	0.46	+0.3
1,484,785	+		GFF1456	0.46	-0.7
1,484,787	+		GFF1456	0.46	+1.5
1,484,787	+		GFF1456	0.46	-0.1
1,484,789	-		GFF1456	0.47	+1.1
1,484,830	+		GFF1456	0.49	+1.0