Strain Fitness in Sphingobium sp. HT1-2 around GFF1441

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,467,132	-		GFF1438	0.77	+0.5
1,467,142	-		GFF1438	0.78	-1.8
1,467,170	-		GFF1438	0.80	+0.2
1,467,179	-		GFF1438	0.81	-0.2
1,467,192	+		GFF1438	0.82	+0.6
1,467,199	+		GFF1438	0.83	-1.6
1,467,207	+		GFF1438	0.84	-1.2
1,467,209	-		GFF1438	0.84	-2.0
1,467,237	+		GFF1438	0.86	+0.8
1,467,241	+		GFF1438	0.87	-0.8
1,467,245	-		GFF1438	0.87	-2.0
1,467,251	+		GFF1438	0.88	-1.1
1,467,251	+		GFF1438	0.88	-2.0
1,467,259	-		GFF1438	0.88	+0.5
1,467,259	-		GFF1438	0.88	-0.6
1,467,259	-		GFF1438	0.88	-0.1
1,467,260	+		GFF1438	0.88	-1.0
1,467,265	+		GFF1438	0.89	-0.3
1,467,288	+				+0.3
1,467,308	-				+1.3
1,467,310	+				-1.2
1,467,311	+				+0.1
1,467,311	+				+1.1
1,467,311	+				-0.1
1,467,311	+				-0.7
1,467,311	+				+0.0
1,467,311	+				+1.3
1,467,311	+				-0.7
1,467,311	+				-0.3
1,467,311	+				+0.2
1,467,319	-				-0.1
1,467,319	-				-0.2
1,467,319	-				-0.8
1,467,319	-				+0.1
1,467,319	-				+0.3
1,467,319	-				-1.5
1,467,319	-				-2.2
1,467,319	-				+1.1
1,467,320	-				-1.7
1,467,359	+				-2.3
1,467,366	+				+1.0
1,467,381	+				-1.2
1,467,389	-				+0.5
1,467,398	+				-1.0
1,467,401	+				-0.6
1,467,401	+				-1.8
1,467,401	-				+0.5
1,467,409	-				+1.2
1,467,409	-				+0.1
1,467,410	+				+1.3
1,467,424	+				+0.6
1,467,439	+				+0.6
1,467,439	+				-0.3
1,467,439	+				-0.4
1,467,447	-				+1.6
1,467,447	-				-1.0
1,467,506	-				-0.7
1,467,506	-				-0.2
1,467,523	-				-1.5
1,467,582	-				+0.5
1,467,599	+				-0.7
1,467,599	+				+1.1
1,467,599	+				-2.0
1,467,599	+				-1.3
1,467,599	+				-2.2
1,467,607	-				-0.1
1,467,607	-				-0.0
1,467,607	-				+0.6
1,467,618	+		GFF1439	0.19	+0.9
1,467,657	-		GFF1439	0.62	-0.4
1,467,666	-		GFF1439	0.72	-1.0
1,467,666	-		GFF1439	0.72	-0.1
1,467,688	+				+0.5
1,467,699	+				+0.4
1,467,779	+				-0.8
1,467,924	-				-1.5
1,467,924	-				-1.4
1,467,946	-		GFF1440	0.18	-0.9
1,468,013	+		GFF1440	0.49	-0.2
1,468,033	-		GFF1440	0.58	-0.6
1,468,035	+		GFF1440	0.59	+0.2
1,468,043	-		GFF1440	0.62	-0.2
1,468,051	+		GFF1440	0.66	-0.1
1,468,051	+		GFF1440	0.66	-2.6
1,468,051	+		GFF1440	0.66	-0.4
1,468,059	-		GFF1440	0.70	-1.2
1,468,065	-		GFF1440	0.73	-0.3
1,468,080	+		GFF1440	0.80	-1.6
1,468,083	+		GFF1440	0.81	-0.8
1,468,086	-		GFF1440	0.82	+0.4
1,468,088	-		GFF1440	0.83	-0.4
1,468,104	-				+0.0
1,469,558	-				-1.2
1,469,563	-				-1.0
1,469,563	-				+1.7
1,469,577	+				-2.3
1,469,585	-				-0.6
1,469,616	-				+0.4
1,469,641	+				-2.6
1,469,641	+				-0.5
1,469,641	+				-0.3
1,469,641	+				-0.5
1,469,641	+				+0.9
1,469,641	+				+0.6
1,469,641	+				-1.3
1,469,641	+				-1.2
1,469,641	+				-1.3
1,469,641	+				+0.3
1,469,641	+				-0.2
1,469,641	+				-0.1
1,469,649	-				+0.5
1,469,649	-				-0.7
1,469,649	-				+1.4
1,469,649	-				-0.2
1,469,649	-				-0.3
1,469,649	-				-1.2
1,469,649	-				+1.3
1,469,661	-				-2.3
1,469,671	+				-0.0
1,469,678	+				-2.2
1,469,679	-				+0.1
1,469,679	-				-1.2
1,469,679	-				-0.7
1,469,680	-				-1.3
1,469,696	+				-1.2
1,469,728	+				+0.0
1,469,728	+				-0.7
1,469,740	+		GFF1442	0.10	-1.4
1,469,748	-		GFF1442	0.11	+0.4
1,469,752	-		GFF1442	0.11	-0.4
1,469,764	+		GFF1442	0.12	+1.2
1,469,765	+		GFF1442	0.13	-0.4
1,469,773	-		GFF1442	0.13	-0.0
1,469,784	+		GFF1442	0.14	+0.6
1,469,787	-		GFF1442	0.14	-0.6
1,469,792	-		GFF1442	0.15	-0.6
1,469,813	+		GFF1442	0.17	+0.8
1,469,821	-		GFF1442	0.17	-1.9
1,469,841	-		GFF1442	0.19	+1.3
1,469,861	+		GFF1442	0.21	+0.2
1,469,885	+		GFF1442	0.23	-0.4
1,469,885	+		GFF1442	0.23	-1.5
1,469,893	-		GFF1442	0.24	-0.7
1,469,900	+		GFF1442	0.24	+1.2
1,469,908	-		GFF1442	0.25	-0.3
1,469,908	-		GFF1442	0.25	-0.3
1,469,908	-		GFF1442	0.25	-1.0
1,469,954	-		GFF1442	0.29	+0.1
1,469,954	-		GFF1442	0.29	-0.5
1,469,962	+		GFF1442	0.30	+1.0
1,469,977	-		GFF1442	0.31	+1.4
1,469,977	-		GFF1442	0.31	+0.2
1,470,003	-		GFF1442	0.33	-0.1
1,470,003	-		GFF1442	0.33	-1.6
1,470,024	+		GFF1442	0.35	-2.7
1,470,027	-		GFF1442	0.35	-0.7
1,470,032	-		GFF1442	0.36	+0.2
1,470,037	+		GFF1442	0.36	-1.2
1,470,062	+		GFF1442	0.38	-2.3
1,470,062	+		GFF1442	0.38	+0.4
1,470,092	+		GFF1442	0.41	+1.0
1,470,112	+		GFF1442	0.43	-0.4
1,470,112	+		GFF1442	0.43	+0.1
1,470,120	-		GFF1442	0.43	+0.4
1,470,138	-		GFF1442	0.45	+1.0
1,470,140	+		GFF1442	0.45	-0.6
1,470,152	+		GFF1442	0.46	-1.4
1,470,164	+		GFF1442	0.47	+2.1
1,470,164	+		GFF1442	0.47	-0.9
1,470,164	+		GFF1442	0.47	-1.9
1,470,164	-		GFF1442	0.47	-0.3
1,470,164	-		GFF1442	0.47	-2.3
1,470,172	-		GFF1442	0.48	+0.7
1,470,172	-		GFF1442	0.48	-0.5
1,470,172	-		GFF1442	0.48	-0.8
1,470,192	-		GFF1442	0.50	+0.6
1,470,207	-		GFF1442	0.51	-1.3
1,470,227	-		GFF1442	0.53	-1.8
1,470,228	-		GFF1442	0.53	-0.1
1,470,243	-		GFF1442	0.54	+0.6
1,470,270	+		GFF1442	0.56	-1.4
1,470,285	+		GFF1442	0.58	-0.1
1,470,293	-		GFF1442	0.58	-1.6
1,470,293	-		GFF1442	0.58	+0.1
1,470,301	+		GFF1442	0.59	-0.0
1,470,301	+		GFF1442	0.59	-0.6
1,470,302	+		GFF1442	0.59	+0.4
1,470,308	+		GFF1442	0.60	-0.2
1,470,309	-		GFF1442	0.60	-0.2
1,470,310	-		GFF1442	0.60	+0.6
1,470,310	-		GFF1442	0.60	+0.6
1,470,310	-		GFF1442	0.60	+0.3
1,470,318	+		GFF1442	0.60	-0.4
1,470,325	+		GFF1442	0.61	-0.2
1,470,325	+		GFF1442	0.61	-0.3
1,470,325	+		GFF1442	0.61	+0.7
1,470,333	-		GFF1442	0.62	-0.9
1,470,333	-		GFF1442	0.62	+0.2
1,470,333	-		GFF1442	0.62	-1.6
1,470,333	-		GFF1442	0.62	+0.8
1,470,340	-		GFF1442	0.62	-0.7
1,470,340	-		GFF1442	0.62	+0.7
1,470,342	+		GFF1442	0.63	-0.6
1,470,347	+		GFF1442	0.63	+0.6
1,470,347	+		GFF1442	0.63	+0.3
1,470,347	+		GFF1442	0.63	+0.2
1,470,355	-		GFF1442	0.64	+0.8
1,470,383	+		GFF1442	0.66	-0.8
1,470,383	+		GFF1442	0.66	-1.9
1,470,409	-		GFF1442	0.68	+1.5
1,470,422	+		GFF1442	0.69	-0.2
1,470,439	+		GFF1442	0.71	+0.3
1,470,450	+		GFF1442	0.72	+1.1
1,470,455	+		GFF1442	0.72	-1.0
1,470,458	-		GFF1442	0.73	-0.7
1,470,468	-		GFF1442	0.73	-0.3
1,470,484	-		GFF1442	0.75	-1.1
1,470,484	-		GFF1442	0.75	+0.6
1,470,489	-		GFF1442	0.75	+1.2
1,470,489	-		GFF1442	0.75	-1.0
1,470,492	+		GFF1442	0.75	-0.6
1,470,492	+		GFF1442	0.75	-0.6
1,470,494	-		GFF1442	0.76	+1.2
1,470,494	-		GFF1442	0.76	+0.1
1,470,500	-		GFF1442	0.76	+0.8
1,470,500	-		GFF1442	0.76	-0.1
1,470,500	-		GFF1442	0.76	-1.7
1,470,500	-		GFF1442	0.76	-0.8
1,470,500	-		GFF1442	0.76	-0.5
1,470,503	+		GFF1442	0.76	-0.5
1,470,503	+		GFF1442	0.76	+0.3
1,470,511	-		GFF1442	0.77	+0.1
1,470,511	-		GFF1442	0.77	+2.0
1,470,511	-		GFF1442	0.77	-1.1
1,470,511	-		GFF1442	0.77	-1.6
1,470,511	-		GFF1442	0.77	-0.2
1,470,511	-		GFF1442	0.77	-2.2
1,470,521	+		GFF1442	0.78	+0.1
1,470,526	+		GFF1442	0.78	-1.6
1,470,526	+		GFF1442	0.78	+0.7