Strain Fitness in Sphingobium sp. HT1-2 around GFF1409

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,436,783	+				-1.5
1,436,783	-				+0.6
1,436,791	-				-0.2
1,436,798	-				-0.5
1,436,804	-				+0.0
1,436,816	-				-0.8
1,436,821	+				-0.2
1,436,829	-				-1.0
1,436,839	+				-1.3
1,436,906	+				-1.4
1,436,906	+				-0.2
1,436,906	+				-1.2
1,436,906	+				+0.9
1,436,906	+				-0.5
1,436,906	+				+0.3
1,436,906	+				-2.7
1,436,906	+				+1.7
1,436,908	+				-0.2
1,436,908	+				-1.8
1,436,914	-				-0.3
1,436,914	-				+0.9
1,436,914	-				-0.7
1,436,914	-				-0.8
1,436,914	-				-0.0
1,436,914	-				-0.1
1,436,914	-				-1.5
1,436,914	-				-1.1
1,436,914	-				-1.3
1,436,914	-				+0.2
1,436,914	-				-2.0
1,436,914	-				+0.1
1,436,916	-				+0.1
1,436,916	-				-1.9
1,436,916	-				-1.0
1,436,916	-				-1.6
1,436,925	+				-1.0
1,436,933	-				-1.3
1,436,933	-				-1.4
1,436,950	-				-0.8
1,436,962	+				-0.9
1,436,965	-				-2.1
1,436,975	-				-2.3
1,436,975	-				-0.5
1,436,979	+				-2.2
1,436,979	+				+0.7
1,436,979	+				+0.9
1,436,979	+				-1.1
1,436,979	+				+0.4
1,436,980	+				-1.2
1,436,980	-				-0.4
1,436,980	-				+0.6
1,436,980	-				-1.8
1,436,986	+				-2.4
1,436,987	-		GFF1408	0.10	-2.6
1,436,987	-		GFF1408	0.10	-0.4
1,436,987	-		GFF1408	0.10	+0.8
1,436,987	-		GFF1408	0.10	+0.6
1,437,015	+		GFF1408	0.14	+0.1
1,437,017	+		GFF1408	0.14	-0.1
1,437,017	+		GFF1408	0.14	-0.4
1,437,025	-		GFF1408	0.15	-1.2
1,437,035	+		GFF1408	0.16	+1.4
1,437,035	+		GFF1408	0.16	-1.4
1,437,035	+		GFF1408	0.16	-0.6
1,437,035	+		GFF1408	0.16	-0.4
1,437,043	+		GFF1408	0.17	-0.4
1,437,043	-		GFF1408	0.17	+0.9
1,437,043	-		GFF1408	0.17	-1.4
1,437,043	-		GFF1408	0.17	-1.3
1,437,043	-		GFF1408	0.17	-0.0
1,437,045	-		GFF1408	0.18	-1.9
1,437,057	+		GFF1408	0.19	-1.3
1,437,057	+		GFF1408	0.19	-0.6
1,437,065	-		GFF1408	0.20	+0.9
1,437,065	-		GFF1408	0.20	+0.3
1,437,070	-		GFF1408	0.21	-0.9
1,437,090	+		GFF1408	0.23	-2.1
1,437,124	+		GFF1408	0.28	-1.9
1,437,124	+		GFF1408	0.28	-1.9
1,437,124	+		GFF1408	0.28	-0.4
1,437,124	+		GFF1408	0.28	+0.3
1,437,124	+		GFF1408	0.28	-0.1
1,437,132	-		GFF1408	0.29	-1.4
1,437,132	-		GFF1408	0.29	-1.9
1,437,155	+		GFF1408	0.32	-0.9
1,437,169	+		GFF1408	0.34	+0.2
1,437,174	+		GFF1408	0.34	-1.4
1,437,179	+		GFF1408	0.35	-1.9
1,437,182	-		GFF1408	0.35	-1.3
1,437,188	-		GFF1408	0.36	+0.1
1,437,188	-		GFF1408	0.36	-0.0
1,437,188	-		GFF1408	0.36	+1.1
1,437,192	-		GFF1408	0.37	-0.7
1,437,193	-		GFF1408	0.37	+0.1
1,437,194	+		GFF1408	0.37	-1.6
1,437,231	+		GFF1408	0.42	+0.2
1,437,238	+		GFF1408	0.43	-1.2
1,437,239	-		GFF1408	0.43	-1.2
1,437,250	+		GFF1408	0.44	-0.9
1,437,264	-		GFF1408	0.46	+0.6
1,437,269	-		GFF1408	0.47	+0.6
1,437,294	+		GFF1408	0.50	+0.7
1,437,305	+		GFF1408	0.51	+0.1
1,437,310	+		GFF1408	0.52	-2.9
1,437,313	-		GFF1408	0.52	-0.2
1,437,341	-		GFF1408	0.56	+0.5
1,437,348	+		GFF1408	0.57	+0.2
1,437,350	+		GFF1408	0.57	-0.9
1,437,403	+		GFF1408	0.64	+0.5
1,437,408	+		GFF1408	0.65	-1.2
1,437,408	+		GFF1408	0.65	-1.2
1,437,416	-		GFF1408	0.66	-0.9
1,437,427	+		GFF1408	0.67	-0.3
1,437,427	+		GFF1408	0.67	-1.1
1,437,427	+		GFF1408	0.67	-0.8
1,437,427	+		GFF1408	0.67	-1.0
1,437,430	-		GFF1408	0.68	-1.6
1,437,435	-		GFF1408	0.68	-1.0
1,437,435	-		GFF1408	0.68	-1.3
1,437,435	-		GFF1408	0.68	-1.7
1,437,454	+		GFF1408	0.71	-0.4
1,437,462	-		GFF1408	0.72	-0.2
1,437,485	-		GFF1408	0.75	-0.8
1,437,498	-		GFF1408	0.77	+0.2
1,437,508	-		GFF1408	0.78	+1.9
1,437,508	-		GFF1408	0.78	-2.0
1,437,526	-		GFF1408	0.80	-1.3
1,437,526	-		GFF1408	0.80	+0.2
1,437,526	-		GFF1408	0.80	-1.6
1,437,532	-		GFF1408	0.81	-0.8
1,437,544	-		GFF1408	0.83	+1.8
1,437,556	+		GFF1408	0.84	+1.7
1,437,556	+		GFF1408	0.84	-0.3
1,437,557	-		GFF1408	0.84	-1.1
1,437,564	-		GFF1408	0.85	-0.6
1,437,610	+				+0.1
1,437,612	+				-0.1
1,437,618	-				-1.0
1,437,627	+				-0.6
1,437,635	-				-0.3
1,437,635	-				-2.0
1,437,635	-				-0.9
1,437,644	+				-1.1
1,437,652	-				-0.6
1,437,662	-				+0.5
1,437,667	-				-1.1
1,437,692	+				+0.7
1,437,700	-				-0.3
1,437,700	-				+0.1
1,437,700	-				-1.5
1,437,711	-				+0.8
1,437,722	+				+0.1
1,437,722	+				-0.1
1,437,722	+				+0.2
1,437,723	-				-0.6
1,437,725	-				-0.9
1,437,725	-				-1.5
1,437,725	-				+0.1
1,437,730	-				-2.3
1,437,730	-				+1.0
1,437,730	-				-0.9
1,437,730	-				-0.0
1,437,730	-				-2.1
1,437,733	-				-1.5
1,437,751	+				-1.7
1,437,776	-				-0.5
1,437,794	-				+0.6
1,437,801	-				-1.5
1,437,834	-				+0.8
1,437,834	-				-1.7
1,437,836	+				-0.2
1,437,844	-				-0.1
1,437,849	-				-1.3
1,437,850	+				-1.2
1,437,850	+				-0.7
1,437,858	-				-1.4
1,437,866	-				-1.3
1,437,867	+				+0.4
1,437,875	-				+0.4
1,437,906	+		GFF1409	0.11	-0.1
1,437,907	+		GFF1409	0.11	-0.2
1,437,907	+		GFF1409	0.11	+0.9
1,437,907	+		GFF1409	0.11	-0.6
1,437,914	-		GFF1409	0.11	-1.6
1,437,915	-		GFF1409	0.11	+1.7
1,437,915	-		GFF1409	0.11	-1.7
1,437,922	+		GFF1409	0.12	+1.1
1,437,922	+		GFF1409	0.12	-2.1
1,437,925	-		GFF1409	0.12	-0.7
1,437,930	-		GFF1409	0.13	+1.2
1,437,936	-		GFF1409	0.13	-0.2
1,437,971	-		GFF1409	0.16	+0.7
1,437,987	-		GFF1409	0.17	-0.1
1,437,988	-		GFF1409	0.17	-0.4
1,437,995	+		GFF1409	0.18	+0.2
1,437,997	-		GFF1409	0.18	-0.7
1,437,997	-		GFF1409	0.18	+1.8
1,438,005	-		GFF1409	0.18	+1.1
1,438,017	+		GFF1409	0.19	-1.1
1,438,022	+		GFF1409	0.20	-0.5
1,438,022	+		GFF1409	0.20	-0.4
1,438,030	-		GFF1409	0.20	-0.3
1,438,064	+		GFF1409	0.23	-0.9
1,438,069	+		GFF1409	0.23	-1.8
1,438,069	+		GFF1409	0.23	-0.4
1,438,077	-		GFF1409	0.24	-0.5
1,438,077	-		GFF1409	0.24	+0.4
1,438,095	+		GFF1409	0.25	-2.0
1,438,103	-		GFF1409	0.26	-0.9
1,438,106	+		GFF1409	0.26	+0.9
1,438,111	+		GFF1409	0.27	+0.9
1,438,111	+		GFF1409	0.27	+0.3
1,438,121	+		GFF1409	0.27	-0.4
1,438,135	+		GFF1409	0.28	-0.9
1,438,146	-		GFF1409	0.29	-0.7
1,438,165	+		GFF1409	0.31	+1.0
1,438,195	-		GFF1409	0.33	-1.1
1,438,196	-		GFF1409	0.33	-1.9
1,438,197	+		GFF1409	0.33	+0.8
1,438,235	+		GFF1409	0.36	-0.8
1,438,247	-		GFF1409	0.37	-0.5
1,438,263	-		GFF1409	0.38	-0.5
1,438,265	+		GFF1409	0.38	-1.6
1,438,266	+		GFF1409	0.38	-1.3
1,438,272	+		GFF1409	0.39	-0.5
1,438,273	-		GFF1409	0.39	-0.2
1,438,274	-		GFF1409	0.39	-1.9
1,438,274	-		GFF1409	0.39	-0.5
1,438,303	-		GFF1409	0.41	+1.2
1,438,309	-		GFF1409	0.42	-1.3
1,438,310	+		GFF1409	0.42	-0.6
1,438,310	+		GFF1409	0.42	-2.1
1,438,317	+		GFF1409	0.42	-2.0
1,438,329	-		GFF1409	0.43	-0.2
1,438,344	-		GFF1409	0.44	+1.0
1,438,351	-		GFF1409	0.45	-1.6
1,438,351	-		GFF1409	0.45	+0.5
1,438,379	+		GFF1409	0.47	+0.7
1,438,387	+		GFF1409	0.48	-1.3
1,438,407	+		GFF1409	0.49	+0.7
1,438,407	+		GFF1409	0.49	+0.1
1,438,432	+		GFF1409	0.51	-1.2
1,438,496	+		GFF1409	0.56	+0.6
1,438,499	-		GFF1409	0.56	-2.1
1,438,504	-		GFF1409	0.57	-0.8
1,438,523	+		GFF1409	0.58	-0.9
1,438,523	+		GFF1409	0.58	-1.2
1,438,526	-		GFF1409	0.58	+0.1
1,438,531	-		GFF1409	0.59	-0.1
1,438,533	+		GFF1409	0.59	-0.2
1,438,541	-		GFF1409	0.59	+1.1
1,438,546	+		GFF1409	0.60	+0.2
1,438,547	+		GFF1409	0.60	+0.3
1,438,547	+		GFF1409	0.60	+0.3
1,438,547	+		GFF1409	0.60	-0.3
1,438,548	+		GFF1409	0.60	-1.4
1,438,548	+		GFF1409	0.60	-0.7
1,438,548	+		GFF1409	0.60	+0.5
1,438,548	+		GFF1409	0.60	+1.0
1,438,555	-		GFF1409	0.61	-0.0
1,438,555	-		GFF1409	0.61	-0.3
1,438,555	-		GFF1409	0.61	-1.0
1,438,555	-		GFF1409	0.61	+0.3
1,438,555	-		GFF1409	0.61	-0.8
1,438,555	-		GFF1409	0.61	+0.2
1,438,555	-		GFF1409	0.61	+0.6
1,438,555	-		GFF1409	0.61	+0.1
1,438,555	-		GFF1409	0.61	-2.3
1,438,555	-		GFF1409	0.61	+1.1
1,438,555	-		GFF1409	0.61	-1.4
1,438,556	-		GFF1409	0.61	+0.8
1,438,556	-		GFF1409	0.61	-1.4
1,438,556	-		GFF1409	0.61	+0.2
1,438,558	+		GFF1409	0.61	-1.1
1,438,563	+		GFF1409	0.61	-0.4
1,438,570	+		GFF1409	0.62	+0.1
1,438,606	+		GFF1409	0.64	-0.9
1,438,614	+		GFF1409	0.65	+0.4
1,438,616	+		GFF1409	0.65	-0.2
1,438,624	-		GFF1409	0.66	+0.7
1,438,653	-		GFF1409	0.68	-1.6
1,438,656	+		GFF1409	0.68	-2.6
1,438,692	-		GFF1409	0.71	-3.3
1,438,707	+		GFF1409	0.72	-1.5
1,438,707	+		GFF1409	0.72	-0.2
1,438,718	-		GFF1409	0.73	-0.5
1,438,764	-		GFF1409	0.77	-1.5
1,438,779	+		GFF1409	0.78	-1.7
1,438,785	+		GFF1409	0.78	-0.4
1,438,785	+		GFF1409	0.78	+0.7
1,438,787	-		GFF1409	0.78	-0.7
1,438,795	+		GFF1409	0.79	+0.4
1,438,795	+		GFF1409	0.79	-0.2
1,438,803	-		GFF1409	0.80	-0.6
1,438,803	-		GFF1409	0.80	-1.1
1,438,809	-		GFF1409	0.80	-0.4
1,438,840	+		GFF1409	0.82	+0.1
1,438,840	+		GFF1409	0.82	-0.6
1,438,840	+		GFF1409	0.82	-0.2
1,438,841	-		GFF1409	0.82	-0.5
1,438,897	-		GFF1409	0.87	+0.3
1,438,903	+		GFF1409	0.87	-0.4
1,438,911	-		GFF1409	0.88	+0.7
1,438,911	-		GFF1409	0.88	+0.1
1,438,914	+		GFF1409	0.88	-0.3
1,438,916	-		GFF1409	0.88	+1.0
1,438,925	+		GFF1409	0.89	+0.8
1,438,925	+		GFF1409	0.89	-0.9
1,438,930	-		GFF1409	0.89	-0.8
1,438,933	-		GFF1409	0.90	-1.5
1,438,933	-		GFF1409	0.90	-2.9
1,438,942	+				-2.1
1,438,965	-				-0.9
1,438,993	-				+0.1
1,438,993	-				+0.2
1,439,004	-				-0.1
1,439,019	-				+2.0
1,439,041	+				+0.4
1,439,049	-				+1.0
1,439,049	-				-0.4
1,439,058	+				-0.9
1,439,063	+				-0.9
1,439,063	+				+0.3
1,439,063	+				-0.4
1,439,071	-				-1.3
1,439,071	-				-0.4
1,439,071	-				+0.2
1,439,078	+				+1.0
1,439,078	+				-0.8
1,439,086	-				-2.0
1,439,094	-				-0.9
1,439,095	+				-1.3
1,439,103	-				-0.9
1,439,103	-				-2.2
1,439,123	-				-1.3
1,439,126	-				+0.6
1,439,164	-				+0.9
1,439,167	+		GFF1410	0.10	-1.5
1,439,183	+		GFF1410	0.12	-2.5
1,439,197	+		GFF1410	0.13	-0.7
1,439,207	+		GFF1410	0.14	+0.0
1,439,306	-		GFF1410	0.24	+0.4
1,439,306	-		GFF1410	0.24	+0.7
1,439,342	+		GFF1410	0.27	-0.8
1,439,352	+		GFF1410	0.28	-3.3
1,439,354	+		GFF1410	0.28	-1.6
1,439,365	+		GFF1410	0.30	+1.2
1,439,369	+		GFF1410	0.30	-0.8
1,439,398	-		GFF1410	0.33	+1.5
1,439,405	+		GFF1410	0.34	+0.3
1,439,405	+		GFF1410	0.34	+0.6
1,439,405	+		GFF1410	0.34	+0.1
1,439,405	+		GFF1410	0.34	+0.8
1,439,405	+		GFF1410	0.34	-2.1
1,439,408	-		GFF1410	0.34	-0.3
1,439,415	+		GFF1410	0.35	-0.4
1,439,475	+		GFF1410	0.40	+0.4
1,439,512	-		GFF1410	0.44	-1.6
1,439,524	-		GFF1410	0.45	+0.4
1,439,527	+		GFF1410	0.46	-0.2
1,439,546	+		GFF1410	0.47	-0.3
1,439,548	+		GFF1410	0.48	-0.2
1,439,556	-		GFF1410	0.48	-1.0
1,439,556	-		GFF1410	0.48	-2.2
1,439,558	+		GFF1410	0.49	+0.6
1,439,558	+		GFF1410	0.49	-1.1
1,439,560	+		GFF1410	0.49	+1.4
1,439,561	-		GFF1410	0.49	-0.5
1,439,566	-		GFF1410	0.49	-0.1
1,439,566	-		GFF1410	0.49	-0.0
1,439,566	-		GFF1410	0.49	-2.2
1,439,566	-		GFF1410	0.49	-1.2
1,439,640	-		GFF1410	0.57	+1.1
1,439,646	+		GFF1410	0.57	-0.9
1,439,646	+		GFF1410	0.57	-2.5
1,439,654	-		GFF1410	0.58	-0.5
1,439,654	-		GFF1410	0.58	+0.8
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