Strain Fitness in Sphingobium sp. HT1-2 around GFF1408

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,435,935	+		GFF1407	0.37	-1.2
1,435,935	+		GFF1407	0.37	-0.2
1,435,942	+		GFF1407	0.37	-1.6
1,435,942	+		GFF1407	0.37	-0.2
1,435,942	+		GFF1407	0.37	-0.2
1,435,947	+		GFF1407	0.37	-0.6
1,435,947	+		GFF1407	0.37	+0.1
1,435,947	+		GFF1407	0.37	-0.4
1,435,947	+		GFF1407	0.37	-0.1
1,435,947	+		GFF1407	0.37	-1.1
1,435,947	+		GFF1407	0.37	-1.7
1,435,950	-		GFF1407	0.37	-0.1
1,435,950	-		GFF1407	0.37	-1.5
1,435,955	-		GFF1407	0.38	+0.5
1,435,955	-		GFF1407	0.38	+1.2
1,435,955	-		GFF1407	0.38	-1.5
1,435,955	-		GFF1407	0.38	+0.2
1,435,960	-		GFF1407	0.38	-1.3
1,436,032	-		GFF1407	0.43	-1.6
1,436,048	-		GFF1407	0.44	-0.6
1,436,058	+		GFF1407	0.44	-1.3
1,436,068	-		GFF1407	0.45	+0.4
1,436,097	-		GFF1407	0.47	-0.3
1,436,097	-		GFF1407	0.47	-1.4
1,436,106	+		GFF1407	0.48	-0.9
1,436,106	+		GFF1407	0.48	-0.5
1,436,106	+		GFF1407	0.48	-1.6
1,436,106	+		GFF1407	0.48	-2.6
1,436,106	+		GFF1407	0.48	+0.9
1,436,106	+		GFF1407	0.48	-1.2
1,436,106	+		GFF1407	0.48	-0.3
1,436,114	-		GFF1407	0.48	+0.9
1,436,114	-		GFF1407	0.48	+0.7
1,436,114	-		GFF1407	0.48	-1.2
1,436,114	-		GFF1407	0.48	-0.2
1,436,114	-		GFF1407	0.48	-0.2
1,436,114	-		GFF1407	0.48	-1.6
1,436,114	-		GFF1407	0.48	-0.8
1,436,127	+		GFF1407	0.49	-0.4
1,436,135	+		GFF1407	0.49	-2.2
1,436,135	-		GFF1407	0.49	+1.0
1,436,135	-		GFF1407	0.49	-1.1
1,436,137	+		GFF1407	0.50	-1.7
1,436,145	-		GFF1407	0.50	-0.6
1,436,146	+		GFF1407	0.50	-0.3
1,436,146	+		GFF1407	0.50	-1.5
1,436,152	+		GFF1407	0.51	-1.0
1,436,153	+		GFF1407	0.51	-0.2
1,436,153	+		GFF1407	0.51	-0.1
1,436,153	+		GFF1407	0.51	+0.8
1,436,153	+		GFF1407	0.51	-0.6
1,436,153	+		GFF1407	0.51	+0.0
1,436,154	-		GFF1407	0.51	-0.1
1,436,158	+		GFF1407	0.51	+1.8
1,436,161	-		GFF1407	0.51	+0.2
1,436,161	-		GFF1407	0.51	-0.1
1,436,161	-		GFF1407	0.51	+0.6
1,436,161	-		GFF1407	0.51	-0.8
1,436,161	-		GFF1407	0.51	+0.2
1,436,161	-		GFF1407	0.51	-0.2
1,436,161	-		GFF1407	0.51	-0.6
1,436,165	+		GFF1407	0.51	+1.0
1,436,203	+		GFF1407	0.54	-1.2
1,436,203	+		GFF1407	0.54	-0.3
1,436,211	-		GFF1407	0.54	-1.0
1,436,213	+		GFF1407	0.55	-2.6
1,436,219	+		GFF1407	0.55	+0.6
1,436,219	+		GFF1407	0.55	-0.6
1,436,221	-		GFF1407	0.55	+0.3
1,436,225	+		GFF1407	0.55	-2.0
1,436,227	-		GFF1407	0.55	+0.2
1,436,229	+		GFF1407	0.56	-0.1
1,436,229	+		GFF1407	0.56	-0.7
1,436,230	+		GFF1407	0.56	-0.9
1,436,233	-		GFF1407	0.56	+1.5
1,436,237	-		GFF1407	0.56	-1.5
1,436,237	-		GFF1407	0.56	-1.4
1,436,238	-		GFF1407	0.56	-0.5
1,436,238	-		GFF1407	0.56	-0.6
1,436,277	-		GFF1407	0.59	+0.8
1,436,280	+		GFF1407	0.59	-0.9
1,436,299	-		GFF1407	0.60	+0.4
1,436,299	-		GFF1407	0.60	+1.9
1,436,300	+		GFF1407	0.60	-0.3
1,436,300	+		GFF1407	0.60	+0.5
1,436,300	+		GFF1407	0.60	-1.4
1,436,308	-		GFF1407	0.61	-1.4
1,436,310	+		GFF1407	0.61	+0.1
1,436,310	+		GFF1407	0.61	-0.1
1,436,318	-		GFF1407	0.61	+0.3
1,436,318	-		GFF1407	0.61	-0.6
1,436,318	-		GFF1407	0.61	-1.3
1,436,318	-		GFF1407	0.61	-1.0
1,436,318	-		GFF1407	0.61	+0.1
1,436,318	-		GFF1407	0.61	-0.5
1,436,319	+		GFF1407	0.61	-0.2
1,436,319	+		GFF1407	0.61	+1.2
1,436,327	-		GFF1407	0.62	+0.3
1,436,327	-		GFF1407	0.62	+0.6
1,436,338	+		GFF1407	0.63	+0.6
1,436,338	+		GFF1407	0.63	-0.7
1,436,343	+		GFF1407	0.63	-1.6
1,436,346	-		GFF1407	0.63	+1.7
1,436,375	+		GFF1407	0.65	-0.8
1,436,375	+		GFF1407	0.65	-0.5
1,436,390	+		GFF1407	0.66	-2.2
1,436,400	+		GFF1407	0.67	-2.1
1,436,423	+		GFF1407	0.68	-0.9
1,436,431	-		GFF1407	0.69	+1.4
1,436,448	-		GFF1407	0.70	+1.5
1,436,458	-		GFF1407	0.70	-0.6
1,436,458	-		GFF1407	0.70	+0.4
1,436,460	+		GFF1407	0.71	-1.1
1,436,460	+		GFF1407	0.71	+0.5
1,436,460	+		GFF1407	0.71	-0.0
1,436,468	-		GFF1407	0.71	+0.5
1,436,487	+		GFF1407	0.72	-0.0
1,436,491	-		GFF1407	0.73	-1.4
1,436,495	-		GFF1407	0.73	-0.8
1,436,495	-		GFF1407	0.73	+0.2
1,436,496	-		GFF1407	0.73	-0.0
1,436,518	-		GFF1407	0.74	-0.8
1,436,523	+		GFF1407	0.75	-0.2
1,436,523	+		GFF1407	0.75	+0.2
1,436,523	+		GFF1407	0.75	-0.6
1,436,533	-		GFF1407	0.75	-0.6
1,436,533	-		GFF1407	0.75	-0.4
1,436,564	-		GFF1407	0.77	-1.2
1,436,582	-		GFF1407	0.78	-2.0
1,436,588	+		GFF1407	0.79	-3.1
1,436,588	+		GFF1407	0.79	+0.7
1,436,593	+		GFF1407	0.79	-0.0
1,436,593	+		GFF1407	0.79	-0.4
1,436,596	-		GFF1407	0.79	+0.0
1,436,598	+		GFF1407	0.80	+1.3
1,436,601	-		GFF1407	0.80	-1.9
1,436,601	-		GFF1407	0.80	+0.6
1,436,610	+		GFF1407	0.80	-0.8
1,436,611	-		GFF1407	0.80	-1.3
1,436,614	+		GFF1407	0.81	-0.3
1,436,615	+		GFF1407	0.81	-0.4
1,436,622	+		GFF1407	0.81	-0.5
1,436,622	+		GFF1407	0.81	+0.7
1,436,622	+		GFF1407	0.81	+0.5
1,436,622	+		GFF1407	0.81	-0.1
1,436,623	-		GFF1407	0.81	+0.4
1,436,623	-		GFF1407	0.81	-2.7
1,436,623	-		GFF1407	0.81	-1.3
1,436,630	-		GFF1407	0.82	-0.2
1,436,630	-		GFF1407	0.82	-0.9
1,436,630	-		GFF1407	0.82	+0.3
1,436,630	-		GFF1407	0.82	-1.2
1,436,640	+		GFF1407	0.82	-0.4
1,436,640	+		GFF1407	0.82	-0.9
1,436,640	+		GFF1407	0.82	-0.2
1,436,645	+		GFF1407	0.83	-2.0
1,436,645	+		GFF1407	0.83	-1.6
1,436,648	-		GFF1407	0.83	+1.4
1,436,648	-		GFF1407	0.83	+0.2
1,436,648	-		GFF1407	0.83	+0.8
1,436,653	-		GFF1407	0.83	-0.8
1,436,658	-		GFF1407	0.83	+0.7
1,436,659	+		GFF1407	0.83	-1.1
1,436,686	+		GFF1407	0.85	-0.2
1,436,688	+		GFF1407	0.85	-0.2
1,436,688	+		GFF1407	0.85	-0.3
1,436,688	+		GFF1407	0.85	-1.9
1,436,688	+		GFF1407	0.85	-1.4
1,436,689	+		GFF1407	0.85	-0.7
1,436,693	+		GFF1407	0.86	-0.3
1,436,694	-		GFF1407	0.86	-0.4
1,436,696	-		GFF1407	0.86	-0.4
1,436,696	-		GFF1407	0.86	-1.3
1,436,696	-		GFF1407	0.86	-0.6
1,436,699	+		GFF1407	0.86	-0.2
1,436,717	+		GFF1407	0.87	-2.2
1,436,720	-		GFF1407	0.87	-1.5
1,436,722	-		GFF1407	0.88	-0.1
1,436,724	+		GFF1407	0.88	-0.2
1,436,727	-		GFF1407	0.88	-1.5
1,436,737	-		GFF1407	0.89	-0.2
1,436,752	-		GFF1407	0.89	+0.3
1,436,783	+				-1.5
1,436,783	-				+0.6
1,436,791	-				-0.2
1,436,798	-				-0.5
1,436,804	-				+0.0
1,436,816	-				-0.8
1,436,821	+				-0.2
1,436,829	-				-1.0
1,436,839	+				-1.3
1,436,906	+				-1.4
1,436,906	+				-0.2
1,436,906	+				-1.2
1,436,906	+				+0.9
1,436,906	+				-0.5
1,436,906	+				+0.3
1,436,906	+				-2.7
1,436,906	+				+1.7
1,436,908	+				-0.2
1,436,908	+				-1.8
1,436,914	-				-0.3
1,436,914	-				+0.9
1,436,914	-				-0.7
1,436,914	-				-0.8
1,436,914	-				-0.0
1,436,914	-				-0.1
1,436,914	-				-1.5
1,436,914	-				-1.1
1,436,914	-				-1.3
1,436,914	-				+0.2
1,436,914	-				-2.0
1,436,914	-				+0.1
1,436,916	-				+0.1
1,436,916	-				-1.9
1,436,916	-				-1.0
1,436,916	-				-1.6
1,436,925	+				-1.0
1,436,933	-				-1.3
1,436,933	-				-1.4
1,436,950	-				-0.8
1,436,962	+				-0.9
1,436,965	-				-2.1
1,436,975	-				-2.3
1,436,975	-				-0.5
1,436,979	+				-2.2
1,436,979	+				+0.7
1,436,979	+				+0.9
1,436,979	+				-1.1
1,436,979	+				+0.4
1,436,980	+				-1.2
1,436,980	-				-0.4
1,436,980	-				+0.6
1,436,980	-				-1.8
1,436,986	+				-2.4
1,436,987	-		GFF1408	0.10	-2.6
1,436,987	-		GFF1408	0.10	-0.4
1,436,987	-		GFF1408	0.10	+0.8
1,436,987	-		GFF1408	0.10	+0.6
1,437,015	+		GFF1408	0.14	+0.1
1,437,017	+		GFF1408	0.14	-0.1
1,437,017	+		GFF1408	0.14	-0.4
1,437,025	-		GFF1408	0.15	-1.2
1,437,035	+		GFF1408	0.16	+1.4
1,437,035	+		GFF1408	0.16	-1.4
1,437,035	+		GFF1408	0.16	-0.6
1,437,035	+		GFF1408	0.16	-0.4
1,437,043	+		GFF1408	0.17	-0.4
1,437,043	-		GFF1408	0.17	+0.9
1,437,043	-		GFF1408	0.17	-1.4
1,437,043	-		GFF1408	0.17	-1.3
1,437,043	-		GFF1408	0.17	-0.0
1,437,045	-		GFF1408	0.18	-1.9
1,437,057	+		GFF1408	0.19	-1.3
1,437,057	+		GFF1408	0.19	-0.6
1,437,065	-		GFF1408	0.20	+0.9
1,437,065	-		GFF1408	0.20	+0.3
1,437,070	-		GFF1408	0.21	-0.9
1,437,090	+		GFF1408	0.23	-2.1
1,437,124	+		GFF1408	0.28	-1.9
1,437,124	+		GFF1408	0.28	-1.9
1,437,124	+		GFF1408	0.28	-0.4
1,437,124	+		GFF1408	0.28	+0.3
1,437,124	+		GFF1408	0.28	-0.1
1,437,132	-		GFF1408	0.29	-1.4
1,437,132	-		GFF1408	0.29	-1.9
1,437,155	+		GFF1408	0.32	-0.9
1,437,169	+		GFF1408	0.34	+0.2
1,437,174	+		GFF1408	0.34	-1.4
1,437,179	+		GFF1408	0.35	-1.9
1,437,182	-		GFF1408	0.35	-1.3
1,437,188	-		GFF1408	0.36	+0.1
1,437,188	-		GFF1408	0.36	-0.0
1,437,188	-		GFF1408	0.36	+1.1
1,437,192	-		GFF1408	0.37	-0.7
1,437,193	-		GFF1408	0.37	+0.1
1,437,194	+		GFF1408	0.37	-1.6
1,437,231	+		GFF1408	0.42	+0.2
1,437,238	+		GFF1408	0.43	-1.2
1,437,239	-		GFF1408	0.43	-1.2
1,437,250	+		GFF1408	0.44	-0.9
1,437,264	-		GFF1408	0.46	+0.6
1,437,269	-		GFF1408	0.47	+0.6
1,437,294	+		GFF1408	0.50	+0.7
1,437,305	+		GFF1408	0.51	+0.1
1,437,310	+		GFF1408	0.52	-2.9
1,437,313	-		GFF1408	0.52	-0.2
1,437,341	-		GFF1408	0.56	+0.5
1,437,348	+		GFF1408	0.57	+0.2
1,437,350	+		GFF1408	0.57	-0.9
1,437,403	+		GFF1408	0.64	+0.5
1,437,408	+		GFF1408	0.65	-1.2
1,437,408	+		GFF1408	0.65	-1.2
1,437,416	-		GFF1408	0.66	-0.9
1,437,427	+		GFF1408	0.67	-0.3
1,437,427	+		GFF1408	0.67	-1.1
1,437,427	+		GFF1408	0.67	-0.8
1,437,427	+		GFF1408	0.67	-1.0
1,437,430	-		GFF1408	0.68	-1.6
1,437,435	-		GFF1408	0.68	-1.0
1,437,435	-		GFF1408	0.68	-1.3
1,437,435	-		GFF1408	0.68	-1.7
1,437,454	+		GFF1408	0.71	-0.4
1,437,462	-		GFF1408	0.72	-0.2
1,437,485	-		GFF1408	0.75	-0.8
1,437,498	-		GFF1408	0.77	+0.2
1,437,508	-		GFF1408	0.78	+1.9
1,437,508	-		GFF1408	0.78	-2.0
1,437,526	-		GFF1408	0.80	-1.3
1,437,526	-		GFF1408	0.80	+0.2
1,437,526	-		GFF1408	0.80	-1.6
1,437,532	-		GFF1408	0.81	-0.8
1,437,544	-		GFF1408	0.83	+1.8
1,437,556	+		GFF1408	0.84	+1.7
1,437,556	+		GFF1408	0.84	-0.3
1,437,557	-		GFF1408	0.84	-1.1
1,437,564	-		GFF1408	0.85	-0.6
1,437,610	+				+0.1
1,437,612	+				-0.1
1,437,618	-				-1.0
1,437,627	+				-0.6
1,437,635	-				-0.3
1,437,635	-				-2.0
1,437,635	-				-0.9
1,437,644	+				-1.1
1,437,652	-				-0.6
1,437,662	-				+0.5
1,437,667	-				-1.1
1,437,692	+				+0.7
1,437,700	-				-0.3
1,437,700	-				+0.1
1,437,700	-				-1.5
1,437,711	-				+0.8
1,437,722	+				+0.1
1,437,722	+				-0.1
1,437,722	+				+0.2
1,437,723	-				-0.6
1,437,725	-				-0.9
1,437,725	-				-1.5
1,437,725	-				+0.1
1,437,730	-				-2.3
1,437,730	-				+1.0
1,437,730	-				-0.9
1,437,730	-				-0.0
1,437,730	-				-2.1
1,437,733	-				-1.5
1,437,751	+				-1.7
1,437,776	-				-0.5
1,437,794	-				+0.6
1,437,801	-				-1.5
1,437,834	-				+0.8
1,437,834	-				-1.7
1,437,836	+				-0.2
1,437,844	-				-0.1
1,437,849	-				-1.3
1,437,850	+				-1.2
1,437,850	+				-0.7
1,437,858	-				-1.4
1,437,866	-				-1.3
1,437,867	+				+0.4
1,437,875	-				+0.4
1,437,906	+		GFF1409	0.11	-0.1
1,437,907	+		GFF1409	0.11	-0.2
1,437,907	+		GFF1409	0.11	+0.9
1,437,907	+		GFF1409	0.11	-0.6
1,437,914	-		GFF1409	0.11	-1.6
1,437,915	-		GFF1409	0.11	+1.7
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