Strain Fitness in Sphingobium sp. HT1-2 around GFF140

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF139 and GFF140 are separated by 27 nucleotidesGFF140 and GFF141 are separated by 190 nucleotides GFF139 - Uncharacterized MFS-type transporter, at 133,007 to 134,596 GFF139 GFF140 - Alanine racemase (EC 5.1.1.1), at 134,624 to 135,667 GFF140 GFF141 - Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 135,858 to 137,030 GFF141 Position (kb) 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1at 133.638 kb on + strand, within GFF139at 133.638 kb on + strand, within GFF139at 133.638 kb on + strand, within GFF139at 133.638 kb on + strand, within GFF139at 133.661 kb on + strand, within GFF139at 133.663 kb on - strand, within GFF139at 133.678 kb on - strand, within GFF139at 133.688 kb on - strand, within GFF139at 133.714 kb on + strand, within GFF139at 133.714 kb on + strand, within GFF139at 133.714 kb on + strand, within GFF139at 133.719 kb on + strand, within GFF139at 133.719 kb on + strand, within GFF139at 133.722 kb on - strand, within GFF139at 133.722 kb on - strand, within GFF139at 133.724 kb on + strand, within GFF139at 133.724 kb on + strand, within GFF139at 133.727 kb on - strand, within GFF139at 133.747 kb on + strand, within GFF139at 133.767 kb on - strand, within GFF139at 133.768 kb on + strand, within GFF139at 133.791 kb on + strand, within GFF139at 133.792 kb on - strand, within GFF139at 133.799 kb on + strand, within GFF139at 133.804 kb on + strand, within GFF139at 133.821 kb on - strand, within GFF139at 133.833 kb on + strand, within GFF139at 133.904 kb on + strand, within GFF139at 133.959 kb on + strand, within GFF139at 133.970 kb on + strand, within GFF139at 133.981 kb on + strand, within GFF139at 133.999 kb on + strand, within GFF139at 133.999 kb on + strand, within GFF139at 133.999 kb on + strand, within GFF139at 133.999 kb on + strand, within GFF139at 133.999 kb on + strand, within GFF139at 134.007 kb on - strand, within GFF139at 134.007 kb on - strand, within GFF139at 134.007 kb on - strand, within GFF139at 134.007 kb on - strand, within GFF139at 134.007 kb on - strand, within GFF139at 134.020 kb on - strand, within GFF139at 134.043 kb on - strand, within GFF139at 134.067 kb on + strand, within GFF139at 134.097 kb on + strand, within GFF139at 134.099 kb on + strand, within GFF139at 134.143 kb on + strand, within GFF139at 134.154 kb on + strand, within GFF139at 134.208 kb on + strand, within GFF139at 134.215 kb on + strand, within GFF139at 134.223 kb on - strand, within GFF139at 134.235 kb on + strand, within GFF139at 134.238 kb on - strand, within GFF139at 134.249 kb on + strand, within GFF139at 134.249 kb on + strand, within GFF139at 134.249 kb on + strand, within GFF139at 134.254 kb on + strand, within GFF139at 134.254 kb on + strand, within GFF139at 134.262 kb on - strand, within GFF139at 134.262 kb on - strand, within GFF139at 134.277 kb on + strand, within GFF139at 134.280 kb on - strand, within GFF139at 134.280 kb on - strand, within GFF139at 134.284 kb on - strand, within GFF139at 134.295 kb on + strand, within GFF139at 134.303 kb on - strand, within GFF139at 134.307 kb on + strand, within GFF139at 134.317 kb on + strand, within GFF139at 134.323 kb on + strand, within GFF139at 134.323 kb on + strand, within GFF139at 134.331 kb on - strand, within GFF139at 134.331 kb on - strand, within GFF139at 134.412 kb on + strand, within GFF139at 134.418 kb on - strand, within GFF139at 134.428 kb on - strand, within GFF139at 134.478 kb on - strandat 134.495 kb on + strandat 134.509 kb on + strandat 134.512 kb on - strandat 134.512 kb on - strandat 134.512 kb on - strandat 134.517 kb on - strandat 134.540 kb on - strandat 134.548 kb on - strandat 134.563 kb on + strandat 134.585 kb on + strandat 134.593 kb on - strandat 134.616 kb on - strandat 134.620 kb on + strandat 135.696 kb on - strandat 135.812 kb on - strandat 135.854 kb on - strandat 135.859 kb on - strandat 135.909 kb on + strandat 135.909 kb on + strandat 135.909 kb on + strandat 135.909 kb on + strandat 135.909 kb on + strandat 135.910 kb on + strandat 135.917 kb on - strandat 135.917 kb on - strandat 135.970 kb on - strandat 136.018 kb on + strand, within GFF141at 136.018 kb on + strand, within GFF141at 136.026 kb on - strand, within GFF141at 136.026 kb on - strand, within GFF141at 136.036 kb on + strand, within GFF141at 136.041 kb on + strand, within GFF141at 136.049 kb on - strand, within GFF141at 136.060 kb on + strand, within GFF141at 136.060 kb on + strand, within GFF141at 136.068 kb on - strand, within GFF141at 136.108 kb on - strand, within GFF141at 136.108 kb on - strand, within GFF141at 136.139 kb on - strand, within GFF141at 136.149 kb on + strand, within GFF141at 136.149 kb on + strand, within GFF141at 136.149 kb on + strand, within GFF141at 136.154 kb on + strand, within GFF141at 136.157 kb on - strand, within GFF141at 136.157 kb on - strand, within GFF141at 136.157 kb on - strand, within GFF141at 136.162 kb on - strand, within GFF141at 136.163 kb on - strand, within GFF141at 136.228 kb on - strand, within GFF141at 136.236 kb on + strand, within GFF141at 136.257 kb on + strand, within GFF141at 136.323 kb on - strand, within GFF141at 136.323 kb on - strand, within GFF141at 136.323 kb on - strand, within GFF141at 136.323 kb on - strand, within GFF141at 136.352 kb on - strand, within GFF141at 136.401 kb on + strand, within GFF141at 136.402 kb on + strand, within GFF141at 136.409 kb on - strand, within GFF141at 136.410 kb on + strand, within GFF141at 136.430 kb on - strand, within GFF141at 136.454 kb on + strand, within GFF141at 136.471 kb on + strand, within GFF141at 136.477 kb on + strand, within GFF141at 136.485 kb on - strand, within GFF141at 136.514 kb on - strand, within GFF141at 136.548 kb on - strand, within GFF141at 136.555 kb on + strand, within GFF141at 136.562 kb on + strand, within GFF141at 136.562 kb on + strand, within GFF141at 136.568 kb on - strand, within GFF141at 136.570 kb on - strand, within GFF141at 136.572 kb on + strand, within GFF141at 136.580 kb on - strand, within GFF141at 136.592 kb on + strand, within GFF141at 136.595 kb on - strand, within GFF141at 136.618 kb on + strand, within GFF141at 136.631 kb on - strand, within GFF141at 136.632 kb on + strand, within GFF141at 136.642 kb on + strand, within GFF141at 136.642 kb on - strand, within GFF141at 136.652 kb on + strand, within GFF141at 136.666 kb on - strand, within GFF141

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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133,638 + GFF139 0.40 +0.3
133,638 + GFF139 0.40 -1.1
133,638 + GFF139 0.40 -0.6
133,638 + GFF139 0.40 +0.4
133,661 + GFF139 0.41 -1.0
133,663 - GFF139 0.41 -0.5
133,678 - GFF139 0.42 -0.7
133,688 - GFF139 0.43 -0.2
133,714 + GFF139 0.44 -0.4
133,714 + GFF139 0.44 -0.5
133,714 + GFF139 0.44 -0.1
133,719 + GFF139 0.45 -0.5
133,719 + GFF139 0.45 -1.7
133,722 - GFF139 0.45 +1.7
133,722 - GFF139 0.45 -0.2
133,724 + GFF139 0.45 +0.2
133,724 + GFF139 0.45 -0.4
133,727 - GFF139 0.45 -1.0
133,747 + GFF139 0.47 -1.2
133,767 - GFF139 0.48 +0.4
133,768 + GFF139 0.48 -0.5
133,791 + GFF139 0.49 -0.9
133,792 - GFF139 0.49 -2.6
133,799 + GFF139 0.50 -0.0
133,804 + GFF139 0.50 -0.4
133,821 - GFF139 0.51 +1.0
133,833 + GFF139 0.52 -0.9
133,904 + GFF139 0.56 +0.7
133,959 + GFF139 0.60 -1.3
133,970 + GFF139 0.61 -0.3
133,981 + GFF139 0.61 -1.0
133,999 + GFF139 0.62 -0.2
133,999 + GFF139 0.62 +1.4
133,999 + GFF139 0.62 +0.3
133,999 + GFF139 0.62 -0.8
133,999 + GFF139 0.62 -0.1
134,007 - GFF139 0.63 -0.6
134,007 - GFF139 0.63 -2.0
134,007 - GFF139 0.63 -2.3
134,007 - GFF139 0.63 -1.5
134,007 - GFF139 0.63 +0.9
134,020 - GFF139 0.64 +0.0
134,043 - GFF139 0.65 +0.9
134,067 + GFF139 0.67 -1.2
134,097 + GFF139 0.69 +1.2
134,099 + GFF139 0.69 -2.1
134,143 + GFF139 0.71 -0.7
134,154 + GFF139 0.72 -0.5
134,208 + GFF139 0.76 -2.3
134,215 + GFF139 0.76 -0.6
134,223 - GFF139 0.76 -0.8
134,235 + GFF139 0.77 +1.7
134,238 - GFF139 0.77 +0.4
134,249 + GFF139 0.78 -0.1
134,249 + GFF139 0.78 -1.6
134,249 + GFF139 0.78 -3.4
134,254 + GFF139 0.78 -0.5
134,254 + GFF139 0.78 +0.4
134,262 - GFF139 0.79 +1.2
134,262 - GFF139 0.79 +0.1
134,277 + GFF139 0.80 -0.2
134,280 - GFF139 0.80 -1.3
134,280 - GFF139 0.80 +0.3
134,284 - GFF139 0.80 +0.2
134,295 + GFF139 0.81 -1.7
134,303 - GFF139 0.82 -1.0
134,307 + GFF139 0.82 -1.1
134,317 + GFF139 0.82 -0.2
134,323 + GFF139 0.83 -0.1
134,323 + GFF139 0.83 -1.9
134,331 - GFF139 0.83 +0.5
134,331 - GFF139 0.83 -1.8
134,412 + GFF139 0.88 +0.4
134,418 - GFF139 0.89 +0.3
134,428 - GFF139 0.89 -1.7
134,478 - -1.1
134,495 + -0.3
134,509 + +0.2
134,512 - -0.2
134,512 - -0.2
134,512 - -0.1
134,517 - -0.8
134,540 - -1.7
134,548 - -0.9
134,563 + +0.3
134,585 + +0.5
134,593 - +1.4
134,616 - +0.5
134,620 + -0.3
135,696 - +0.9
135,812 - +1.0
135,854 - +0.4
135,859 - -0.1
135,909 + -1.4
135,909 + -0.6
135,909 + -0.3
135,909 + -0.6
135,909 + -1.7
135,910 + +0.1
135,917 - +0.0
135,917 - +0.9
135,970 - -1.3
136,018 + GFF141 0.14 -0.6
136,018 + GFF141 0.14 +0.5
136,026 - GFF141 0.14 -1.7
136,026 - GFF141 0.14 -1.2
136,036 + GFF141 0.15 -0.3
136,041 + GFF141 0.16 +0.3
136,049 - GFF141 0.16 -2.3
136,060 + GFF141 0.17 +0.3
136,060 + GFF141 0.17 -1.8
136,068 - GFF141 0.18 -0.1
136,108 - GFF141 0.21 -0.8
136,108 - GFF141 0.21 +0.9
136,139 - GFF141 0.24 +0.2
136,149 + GFF141 0.25 +0.8
136,149 + GFF141 0.25 +0.1
136,149 + GFF141 0.25 -1.8
136,154 + GFF141 0.25 -0.1
136,157 - GFF141 0.25 -2.1
136,157 - GFF141 0.25 +0.3
136,157 - GFF141 0.25 +0.2
136,162 - GFF141 0.26 -2.1
136,163 - GFF141 0.26 +0.3
136,228 - GFF141 0.32 -1.6
136,236 + GFF141 0.32 -1.5
136,257 + GFF141 0.34 -0.3
136,323 - GFF141 0.40 -0.2
136,323 - GFF141 0.40 -1.5
136,323 - GFF141 0.40 -1.4
136,323 - GFF141 0.40 +0.6
136,352 - GFF141 0.42 -0.9
136,401 + GFF141 0.46 -0.1
136,402 + GFF141 0.46 -0.8
136,409 - GFF141 0.47 -1.8
136,410 + GFF141 0.47 -1.1
136,430 - GFF141 0.49 -2.1
136,454 + GFF141 0.51 -1.6
136,471 + GFF141 0.52 +0.2
136,477 + GFF141 0.53 -1.8
136,485 - GFF141 0.53 -0.3
136,514 - GFF141 0.56 -1.7
136,548 - GFF141 0.59 -0.6
136,555 + GFF141 0.59 -1.2
136,562 + GFF141 0.60 -2.1
136,562 + GFF141 0.60 -1.5
136,568 - GFF141 0.61 -1.3
136,570 - GFF141 0.61 -1.3
136,572 + GFF141 0.61 +0.1
136,580 - GFF141 0.62 -0.6
136,592 + GFF141 0.63 +0.2
136,595 - GFF141 0.63 -1.4
136,618 + GFF141 0.65 -0.8
136,631 - GFF141 0.66 -1.1
136,632 + GFF141 0.66 +0.3
136,642 + GFF141 0.67 -0.1
136,642 - GFF141 0.67 -0.9
136,652 + GFF141 0.68 -0.5
136,666 - GFF141 0.69 -0.3

Or see this region's nucleotide sequence