Strain Fitness in Sphingobium sp. HT1-2 around GFF1363

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,385,199	+		GFF1362	0.30	+0.0
1,385,256	+		GFF1362	0.34	-0.4
1,385,261	+		GFF1362	0.34	-0.7
1,385,280	-		GFF1362	0.36	-0.9
1,385,291	+		GFF1362	0.37	+0.4
1,385,299	-		GFF1362	0.37	-0.2
1,385,310	-		GFF1362	0.38	+0.0
1,385,325	+		GFF1362	0.39	-0.5
1,385,336	-		GFF1362	0.40	+0.2
1,385,362	+		GFF1362	0.42	-0.9
1,385,390	+		GFF1362	0.44	-2.4
1,385,392	+		GFF1362	0.44	-1.9
1,385,401	+		GFF1362	0.45	-1.7
1,385,402	+		GFF1362	0.45	-1.6
1,385,402	+		GFF1362	0.45	-2.2
1,385,402	+		GFF1362	0.45	-1.9
1,385,402	+		GFF1362	0.45	+0.2
1,385,402	+		GFF1362	0.45	-1.7
1,385,402	+		GFF1362	0.45	-0.9
1,385,402	+		GFF1362	0.45	+0.2
1,385,402	+		GFF1362	0.45	+1.5
1,385,407	+		GFF1362	0.45	-1.4
1,385,408	-		GFF1362	0.45	-0.4
1,385,409	-		GFF1362	0.45	-0.4
1,385,410	-		GFF1362	0.45	+0.4
1,385,410	-		GFF1362	0.45	-1.1
1,385,410	-		GFF1362	0.45	-0.5
1,385,410	-		GFF1362	0.45	+0.1
1,385,410	-		GFF1362	0.45	+1.2
1,385,410	-		GFF1362	0.45	+0.1
1,385,412	+		GFF1362	0.45	-0.6
1,385,420	+		GFF1362	0.46	-1.5
1,385,426	+		GFF1362	0.46	+0.5
1,385,459	+		GFF1362	0.49	-0.3
1,385,466	+		GFF1362	0.49	+0.7
1,385,491	+		GFF1362	0.51	-0.2
1,385,491	+		GFF1362	0.51	+0.6
1,385,491	+		GFF1362	0.51	+0.5
1,385,506	-		GFF1362	0.52	+0.5
1,385,524	-		GFF1362	0.54	-0.9
1,385,533	+		GFF1362	0.54	-1.1
1,385,536	-		GFF1362	0.54	-0.2
1,385,541	-		GFF1362	0.55	-0.9
1,385,542	-		GFF1362	0.55	+0.2
1,385,556	-		GFF1362	0.56	+0.2
1,385,557	+		GFF1362	0.56	-0.2
1,385,557	+		GFF1362	0.56	-1.0
1,385,557	+		GFF1362	0.56	+0.6
1,385,557	+		GFF1362	0.56	-0.3
1,385,557	+		GFF1362	0.56	+0.2
1,385,565	-		GFF1362	0.56	-0.1
1,385,565	-		GFF1362	0.56	+0.5
1,385,565	-		GFF1362	0.56	-0.1
1,385,565	-		GFF1362	0.56	-1.5
1,385,565	-		GFF1362	0.56	-0.3
1,385,565	-		GFF1362	0.56	-0.4
1,385,570	-		GFF1362	0.57	+0.3
1,385,580	+		GFF1362	0.58	+0.2
1,385,590	+		GFF1362	0.58	-1.1
1,385,617	+		GFF1362	0.60	+0.3
1,385,617	+		GFF1362	0.60	-1.9
1,385,617	+		GFF1362	0.60	+0.0
1,385,625	-		GFF1362	0.61	-0.5
1,385,625	-		GFF1362	0.61	-1.4
1,385,625	-		GFF1362	0.61	-0.6
1,385,634	+		GFF1362	0.61	+0.2
1,385,642	-		GFF1362	0.62	-0.3
1,385,642	-		GFF1362	0.62	+0.4
1,385,644	+		GFF1362	0.62	-0.1
1,385,668	+		GFF1362	0.64	-0.1
1,385,685	+		GFF1362	0.65	-0.6
1,385,685	+		GFF1362	0.65	-0.6
1,385,685	+		GFF1362	0.65	-0.1
1,385,685	+		GFF1362	0.65	-0.4
1,385,685	+		GFF1362	0.65	-1.6
1,385,690	+		GFF1362	0.66	+0.1
1,385,693	-		GFF1362	0.66	-1.4
1,385,693	-		GFF1362	0.66	-1.4
1,385,698	-		GFF1362	0.66	-1.9
1,385,698	-		GFF1362	0.66	+0.4
1,385,793	-		GFF1362	0.73	+0.5
1,385,793	-		GFF1362	0.73	-1.3
1,385,805	-		GFF1362	0.74	+0.1
1,385,820	-		GFF1362	0.75	-1.9
1,385,820	-		GFF1362	0.75	-0.9
1,385,844	-		GFF1362	0.77	-0.7
1,385,847	+		GFF1362	0.77	-0.9
1,385,847	+		GFF1362	0.77	-1.0
1,385,879	+		GFF1362	0.79	+0.2
1,385,879	+		GFF1362	0.79	-2.0
1,385,879	+		GFF1362	0.79	+0.9
1,385,880	+		GFF1362	0.79	-1.7
1,385,887	-		GFF1362	0.80	-0.4
1,385,887	-		GFF1362	0.80	-0.2
1,385,887	-		GFF1362	0.80	+0.1
1,385,887	-		GFF1362	0.80	-0.4
1,385,887	-		GFF1362	0.80	-3.1
1,385,887	-		GFF1362	0.80	+0.6
1,385,887	-		GFF1362	0.80	+0.5
1,385,892	-		GFF1362	0.80	-0.8
1,385,909	-		GFF1362	0.81	-0.4
1,385,909	-		GFF1362	0.81	-0.9
1,385,918	+		GFF1362	0.82	+0.8
1,385,921	-		GFF1362	0.82	-0.9
1,385,923	+		GFF1362	0.82	-0.2
1,385,924	-		GFF1362	0.82	-1.5
1,385,926	-		GFF1362	0.83	+0.9
1,385,926	-		GFF1362	0.83	+0.9
1,385,926	-		GFF1362	0.83	-0.3
1,385,930	+		GFF1362	0.83	-1.7
1,385,949	+		GFF1362	0.84	-0.1
1,385,955	+		GFF1362	0.85	+0.8
1,385,961	-		GFF1362	0.85	-1.5
1,385,964	+		GFF1362	0.85	-1.5
1,385,972	-		GFF1362	0.86	+0.9
1,386,008	+		GFF1362	0.89	+0.7
1,386,034	+				+0.6
1,386,034	+				-2.1
1,386,042	-				-0.1
1,386,042	-				+0.7
1,386,042	-				-0.0
1,386,049	+				-1.1
1,386,054	+				-0.8
1,386,054	+				+0.4
1,386,061	+				-1.6
1,386,062	-				+1.9
1,386,062	-				-0.5
1,386,063	-				-0.2
1,386,068	-				-2.3
1,386,070	+				+0.1
1,386,070	+				+0.2
1,386,081	+				-1.2
1,386,098	+				-3.2
1,386,099	+				-2.0
1,386,104	+				-0.3
1,386,112	-				+0.7
1,386,115	-				-1.4
1,386,137	-				-0.5
1,386,146	+				-0.0
1,386,154	-				-1.8
1,386,173	+				-0.1
1,386,173	+				+1.3
1,386,183	+				+1.2
1,386,183	+				-0.5
1,386,192	-				+0.5
1,386,208	+				+1.2
1,386,224	+				+0.2
1,386,229	+				-0.8
1,386,230	+				+0.5
1,386,230	+				+0.3
1,386,234	+				-1.9
1,386,238	-				+0.3
1,386,260	+				-0.7
1,386,268	-				+1.0
1,386,283	-				+0.6
1,386,283	-				-0.8
1,386,284	-				+0.7
1,386,292	+				-1.9
1,386,298	-				+0.3
1,386,335	+				+0.4
1,386,343	-		GFF1363	0.10	-0.7
1,386,348	+		GFF1363	0.11	-1.1
1,386,348	+		GFF1363	0.11	-2.1
1,386,348	-		GFF1363	0.11	-0.2
1,386,362	+		GFF1363	0.12	+0.2
1,386,398	-		GFF1363	0.14	-0.3
1,386,403	+		GFF1363	0.14	-0.0
1,386,404	+		GFF1363	0.14	+0.2
1,386,422	-		GFF1363	0.16	-1.7
1,386,429	+		GFF1363	0.16	-1.3
1,386,429	+		GFF1363	0.16	-1.1
1,386,429	+		GFF1363	0.16	-1.3
1,386,435	-		GFF1363	0.16	+0.1
1,386,437	-		GFF1363	0.17	-0.1
1,386,437	-		GFF1363	0.17	-0.7
1,386,442	+		GFF1363	0.17	-0.3
1,386,450	-		GFF1363	0.17	+0.1
1,386,452	+		GFF1363	0.18	+1.1
1,386,452	+		GFF1363	0.18	-0.0
1,386,460	-		GFF1363	0.18	-1.1
1,386,464	+		GFF1363	0.18	-0.6
1,386,465	-		GFF1363	0.18	-1.6
1,386,482	+		GFF1363	0.20	-0.7
1,386,490	-		GFF1363	0.20	+0.3
1,386,491	+		GFF1363	0.20	+0.4
1,386,520	+		GFF1363	0.22	-1.9
1,386,528	-		GFF1363	0.23	+0.1
1,386,528	-		GFF1363	0.23	+2.4
1,386,528	-		GFF1363	0.23	-1.7
1,386,528	-		GFF1363	0.23	+0.3
1,386,584	-		GFF1363	0.27	+1.0
1,386,594	+		GFF1363	0.27	-1.1
1,386,597	-		GFF1363	0.27	+0.3
1,386,599	+		GFF1363	0.28	-0.3
1,386,599	+		GFF1363	0.28	-0.6
1,386,607	-		GFF1363	0.28	-0.2
1,386,607	-		GFF1363	0.28	+0.6
1,386,607	-		GFF1363	0.28	-1.5
1,386,607	-		GFF1363	0.28	-1.5
1,386,607	-		GFF1363	0.28	+0.4
1,386,607	-		GFF1363	0.28	-0.5
1,386,624	+		GFF1363	0.29	+0.6
1,386,626	+		GFF1363	0.29	+0.6
1,386,626	+		GFF1363	0.29	+0.6
1,386,626	+		GFF1363	0.29	-0.1
1,386,626	+		GFF1363	0.29	-2.1
1,386,634	-		GFF1363	0.30	+0.5
1,386,634	-		GFF1363	0.30	-1.0
1,386,634	-		GFF1363	0.30	-0.1
1,386,634	-		GFF1363	0.30	+1.0
1,386,634	-		GFF1363	0.30	-1.1
1,386,634	-		GFF1363	0.30	-1.9
1,386,634	-		GFF1363	0.30	+0.6
1,386,634	-		GFF1363	0.30	+0.2
1,386,642	-		GFF1363	0.30	+0.4
1,386,646	+		GFF1363	0.31	-2.0
1,386,680	-		GFF1363	0.33	-1.9
1,386,689	+		GFF1363	0.34	-0.3
1,386,689	+		GFF1363	0.34	-0.0
1,386,689	+		GFF1363	0.34	+1.2
1,386,689	+		GFF1363	0.34	-2.4
1,386,689	+		GFF1363	0.34	-0.4
1,386,689	+		GFF1363	0.34	-0.2
1,386,689	+		GFF1363	0.34	+0.1
1,386,689	+		GFF1363	0.34	-0.5
1,386,689	+		GFF1363	0.34	-1.4
1,386,689	+		GFF1363	0.34	+0.1
1,386,689	+		GFF1363	0.34	+0.7
1,386,697	-		GFF1363	0.34	-0.6
1,386,697	-		GFF1363	0.34	-1.3
1,386,697	-		GFF1363	0.34	-0.0
1,386,697	-		GFF1363	0.34	+0.1
1,386,697	-		GFF1363	0.34	-0.3
1,386,697	-		GFF1363	0.34	-0.2
1,386,697	-		GFF1363	0.34	+1.1
1,386,697	-		GFF1363	0.34	+0.3
1,386,697	-		GFF1363	0.34	+0.1
1,386,704	+		GFF1363	0.35	-1.1
1,386,720	-		GFF1363	0.36	-1.1
1,386,728	+		GFF1363	0.36	-0.8
1,386,729	+		GFF1363	0.36	+0.8
1,386,738	+		GFF1363	0.37	-0.3
1,386,746	-		GFF1363	0.38	-1.9
1,386,767	+		GFF1363	0.39	-0.6
1,386,781	+		GFF1363	0.40	-0.6
1,386,786	+		GFF1363	0.40	-0.5
1,386,786	+		GFF1363	0.40	-1.1
1,386,786	+		GFF1363	0.40	+0.1
1,386,789	-		GFF1363	0.40	-1.3
1,386,789	-		GFF1363	0.40	-0.0
1,386,791	+		GFF1363	0.41	-0.7
1,386,791	+		GFF1363	0.41	+1.5
1,386,791	+		GFF1363	0.41	+0.3
1,386,791	+		GFF1363	0.41	-2.1
1,386,791	+		GFF1363	0.41	+0.1
1,386,791	+		GFF1363	0.41	-0.4
1,386,796	+		GFF1363	0.41	+0.3
1,386,796	+		GFF1363	0.41	-0.0
1,386,796	+		GFF1363	0.41	-0.1
1,386,799	-		GFF1363	0.41	+0.1
1,386,799	-		GFF1363	0.41	-0.1
1,386,799	-		GFF1363	0.41	+0.9
1,386,799	-		GFF1363	0.41	-0.8
1,386,799	-		GFF1363	0.41	-1.4
1,386,804	-		GFF1363	0.41	+1.3
1,386,814	+		GFF1363	0.42	-1.3
1,386,832	-		GFF1363	0.43	+0.2
1,386,839	-		GFF1363	0.44	-0.4
1,386,846	+		GFF1363	0.44	-0.6
1,386,856	+		GFF1363	0.45	-0.9
1,386,856	+		GFF1363	0.45	-1.3
1,386,899	-		GFF1363	0.48	-1.0
1,386,918	+		GFF1363	0.49	-0.1
1,386,926	-		GFF1363	0.50	-1.4
1,386,929	-		GFF1363	0.50	+0.4
1,386,946	+		GFF1363	0.51	-0.6
1,386,949	-		GFF1363	0.51	-1.6
1,386,951	+		GFF1363	0.51	-0.1
1,386,964	+		GFF1363	0.52	-1.5
1,386,972	-		GFF1363	0.53	-2.0
1,386,972	-		GFF1363	0.53	+0.1
1,386,972	-		GFF1363	0.53	-0.1
1,386,972	-		GFF1363	0.53	+0.1
1,386,972	-		GFF1363	0.53	+0.5
1,386,972	-		GFF1363	0.53	-0.2
1,387,046	-		GFF1363	0.58	-1.5
1,387,062	+		GFF1363	0.59	+0.3
1,387,062	+		GFF1363	0.59	+1.1
1,387,062	+		GFF1363	0.59	+0.1
1,387,062	+		GFF1363	0.59	-1.3
1,387,062	+		GFF1363	0.59	+0.3
1,387,062	+		GFF1363	0.59	-1.5
1,387,067	+		GFF1363	0.59	-0.1
1,387,067	+		GFF1363	0.59	-0.3
1,387,067	+		GFF1363	0.59	+0.1
1,387,067	+		GFF1363	0.59	+0.8
1,387,070	-		GFF1363	0.59	-1.9
1,387,070	-		GFF1363	0.59	-0.0
1,387,075	-		GFF1363	0.60	+0.6
1,387,075	-		GFF1363	0.60	+0.1
1,387,075	-		GFF1363	0.60	-1.3
1,387,075	-		GFF1363	0.60	-0.3
1,387,075	-		GFF1363	0.60	-1.7
1,387,115	-		GFF1363	0.63	+0.8
1,387,122	+		GFF1363	0.63	+0.7
1,387,122	+		GFF1363	0.63	-1.3
1,387,130	-		GFF1363	0.64	-1.5
1,387,130	-		GFF1363	0.64	-2.3
1,387,130	-		GFF1363	0.64	-0.0
1,387,157	-		GFF1363	0.65	-1.8
1,387,162	+		GFF1363	0.66	-1.7
1,387,199	+		GFF1363	0.68	-1.2
1,387,207	-		GFF1363	0.69	+0.6
1,387,207	-		GFF1363	0.69	+0.5
1,387,207	-		GFF1363	0.69	+1.0
1,387,212	-		GFF1363	0.69	+0.1
1,387,214	-		GFF1363	0.69	+0.6
1,387,223	+		GFF1363	0.70	-0.4
1,387,231	-		GFF1363	0.70	-0.0
1,387,240	+		GFF1363	0.71	-0.1
1,387,242	-		GFF1363	0.71	-0.0
1,387,248	-		GFF1363	0.72	-1.9
1,387,256	-		GFF1363	0.72	-0.8
1,387,265	+		GFF1363	0.73	+0.7
1,387,304	+		GFF1363	0.75	-1.3
1,387,304	+		GFF1363	0.75	-0.4
1,387,312	-		GFF1363	0.76	+1.3
1,387,323	+		GFF1363	0.77	-0.3
1,387,323	+		GFF1363	0.77	-0.3
1,387,331	-		GFF1363	0.77	+0.1
1,387,398	+		GFF1363	0.82	-0.4
1,387,404	+		GFF1363	0.82	-1.5
1,387,412	-		GFF1363	0.83	-0.5
1,387,414	+		GFF1363	0.83	+0.7
1,387,414	+		GFF1363	0.83	+0.4
1,387,415	+		GFF1363	0.83	-1.3
1,387,422	-		GFF1363	0.83	+1.1
1,387,422	-		GFF1363	0.83	+0.1
1,387,426	-		GFF1363	0.84	-0.7
1,387,433	-		GFF1363	0.84	+1.6
1,387,435	+		GFF1363	0.84	+0.2
1,387,440	+		GFF1363	0.85	-1.2
1,387,450	+		GFF1363	0.85	+0.4
1,387,450	+		GFF1363	0.85	-1.9
1,387,469	+		GFF1363	0.87	+0.1
1,387,470	+		GFF1363	0.87	+0.1
1,387,470	+		GFF1363	0.87	+0.6
1,387,470	+		GFF1363	0.87	-0.2
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1,387,478	-		GFF1363	0.87	-2.5
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1,387,502	-		GFF1363	0.89	+0.4
1,387,514	+		GFF1363	0.90	+0.0
1,387,524	+				+1.2
1,387,524	+				-0.7
1,387,542	-				-0.7
1,387,559	+				+0.7
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1,387,564	-				-1.6
1,387,566	+				-0.3
1,387,607	-				-1.1
1,387,612	+				+0.9
1,387,635	+				-1.6
1,387,635	+				-0.4
1,387,638	-				+1.3
1,387,640	+				-0.6
1,387,640	+				-0.6
1,387,640	+				-0.1
1,387,643	-				-0.5
1,387,648	-				-1.8
1,387,648	-				+0.2
1,387,648	-				+1.2
1,387,648	-				-0.0
1,387,648	-				-0.4
1,387,648	-				-0.3
1,387,648	-				-0.7
1,387,656	+				-0.5
1,387,656	+				-2.0
1,387,661	+				+0.6
1,387,663	+				+0.5
1,387,663	+				-0.1
1,387,663	+				-1.8
1,387,666	+				-2.7
1,387,671	-				-0.0
1,387,671	-				-0.6
1,387,679	-				-0.8
1,387,683	+				-0.6
1,387,683	+				+0.2
1,387,696	+				-1.4
1,387,698	+				-0.4
1,387,704	-				-0.2
1,387,714	+				+0.6
1,387,717	-				+0.1
1,387,717	-				+0.5
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1,387,722	-				-1.5
1,387,742	+				+0.0
1,387,742	+				-1.7
1,387,742	+				-1.7
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1,387,761	-				-2.6
1,387,765	-				-0.8
1,387,766	-				-2.3
1,387,769	-				+0.1
1,387,770	+				+0.2
1,387,778	+				-0.0
1,387,821	+				-1.0
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1,388,004	-		GFF1364	0.22	-1.3
1,388,004	-		GFF1364	0.22	-0.9
1,388,006	+		GFF1364	0.22	+0.2
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1,388,014	+		GFF1364	0.23	-2.0
1,388,014	+		GFF1364	0.23	-2.1
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1,388,046	+		GFF1364	0.25	-0.0
1,388,046	+		GFF1364	0.25	-1.0
1,388,053	-		GFF1364	0.26	-1.9
1,388,054	-		GFF1364	0.26	-1.1
1,388,054	-		GFF1364	0.26	-0.5
1,388,074	+		GFF1364	0.27	-1.0
1,388,074	+		GFF1364	0.27	+0.8
1,388,079	+		GFF1364	0.28	-0.3
1,388,081	+		GFF1364	0.28	-0.2
1,388,082	-		GFF1364	0.28	-2.2
1,388,129	-		GFF1364	0.31	-0.7
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1,388,134	-		GFF1364	0.32	-0.3
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1,388,161	-		GFF1364	0.33	-0.1
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1,388,223	+		GFF1364	0.38	-1.9
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1,388,462	-		GFF1364	0.55	-0.9
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1,388,498	-		GFF1364	0.57	-0.1
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1,388,614	-		GFF1364	0.66	+0.2
1,388,657	-		GFF1364	0.69	-0.1