Strain Fitness in Sphingobium sp. HT1-2 around GFF1342

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,364,647	+		GFF1341	0.18	+0.2
1,364,647	+		GFF1341	0.18	-0.1
1,364,647	+		GFF1341	0.18	-0.5
1,364,648	+		GFF1341	0.18	+1.0
1,364,648	+		GFF1341	0.18	-1.4
1,364,648	+		GFF1341	0.18	-0.2
1,364,655	-		GFF1341	0.19	-0.0
1,364,655	-		GFF1341	0.19	-0.4
1,364,655	-		GFF1341	0.19	+0.9
1,364,656	-		GFF1341	0.19	+0.4
1,364,657	-		GFF1341	0.19	+0.6
1,364,687	+		GFF1341	0.21	-1.5
1,364,697	+		GFF1341	0.22	+1.1
1,364,697	+		GFF1341	0.22	+1.3
1,364,700	-		GFF1341	0.22	+0.5
1,364,702	+		GFF1341	0.22	+1.1
1,364,702	+		GFF1341	0.22	+0.7
1,364,702	+		GFF1341	0.22	-0.4
1,364,702	+		GFF1341	0.22	-0.7
1,364,705	-		GFF1341	0.23	-1.3
1,364,710	-		GFF1341	0.23	-0.6
1,364,710	-		GFF1341	0.23	-0.3
1,364,727	+		GFF1341	0.24	-0.5
1,364,727	+		GFF1341	0.24	-0.1
1,364,732	+		GFF1341	0.25	-2.2
1,364,732	+		GFF1341	0.25	-1.4
1,364,732	+		GFF1341	0.25	+0.6
1,364,732	+		GFF1341	0.25	-0.0
1,364,738	+		GFF1341	0.25	-0.9
1,364,740	+		GFF1341	0.25	-0.5
1,364,740	-		GFF1341	0.25	+0.1
1,364,740	-		GFF1341	0.25	-1.9
1,364,740	-		GFF1341	0.25	-1.3
1,364,740	-		GFF1341	0.25	-2.1
1,364,740	-		GFF1341	0.25	-1.4
1,364,740	-		GFF1341	0.25	-1.8
1,364,740	-		GFF1341	0.25	-0.0
1,364,747	+		GFF1341	0.26	+0.9
1,364,760	+		GFF1341	0.27	+0.4
1,364,778	+		GFF1341	0.29	+0.3
1,364,800	-		GFF1341	0.30	-0.2
1,364,801	-		GFF1341	0.30	-2.0
1,364,811	+		GFF1341	0.31	-0.8
1,364,830	+		GFF1341	0.33	-0.6
1,364,834	+		GFF1341	0.33	-0.1
1,364,859	+		GFF1341	0.35	-0.6
1,364,859	+		GFF1341	0.35	-0.7
1,364,864	+		GFF1341	0.36	+0.7
1,364,866	+		GFF1341	0.36	-1.1
1,364,866	+		GFF1341	0.36	+1.4
1,364,867	-		GFF1341	0.36	-1.5
1,364,869	+		GFF1341	0.36	+0.0
1,364,869	-		GFF1341	0.36	+0.7
1,364,872	-		GFF1341	0.36	+1.2
1,364,872	-		GFF1341	0.36	+0.3
1,364,872	-		GFF1341	0.36	-0.4
1,364,872	-		GFF1341	0.36	-0.0
1,364,872	-		GFF1341	0.36	-1.3
1,364,874	-		GFF1341	0.36	-0.3
1,364,879	+		GFF1341	0.37	-1.4
1,364,890	-		GFF1341	0.38	+0.4
1,364,895	+		GFF1341	0.38	-0.3
1,364,895	-		GFF1341	0.38	+0.6
1,364,904	+		GFF1341	0.39	+1.2
1,364,904	+		GFF1341	0.39	-0.5
1,364,911	+		GFF1341	0.39	+0.3
1,364,919	-		GFF1341	0.40	-0.8
1,364,937	+		GFF1341	0.42	-0.0
1,364,962	-		GFF1341	0.44	+0.5
1,364,971	-		GFF1341	0.44	-0.8
1,364,973	+		GFF1341	0.45	+0.3
1,364,973	+		GFF1341	0.45	-1.2
1,364,981	-		GFF1341	0.45	-0.7
1,364,983	+		GFF1341	0.45	-1.6
1,364,983	+		GFF1341	0.45	-0.4
1,364,983	+		GFF1341	0.45	+0.8
1,364,983	+		GFF1341	0.45	-0.3
1,364,986	-		GFF1341	0.46	+0.2
1,364,991	-		GFF1341	0.46	-0.0
1,364,991	-		GFF1341	0.46	-1.0
1,364,991	-		GFF1341	0.46	-1.3
1,364,994	-		GFF1341	0.46	-1.7
1,365,005	-		GFF1341	0.47	+0.2
1,365,025	-		GFF1341	0.49	+1.1
1,365,025	-		GFF1341	0.49	+0.1
1,365,027	-		GFF1341	0.49	-0.1
1,365,027	-		GFF1341	0.49	-1.8
1,365,035	+		GFF1341	0.50	+0.9
1,365,035	+		GFF1341	0.50	+0.6
1,365,040	+		GFF1341	0.50	-1.3
1,365,051	+		GFF1341	0.51	-0.5
1,365,053	+		GFF1341	0.51	+0.2
1,365,059	-		GFF1341	0.52	-0.3
1,365,059	-		GFF1341	0.52	+0.7
1,365,061	+		GFF1341	0.52	-0.3
1,365,066	+		GFF1341	0.52	-0.8
1,365,066	-		GFF1341	0.52	+0.3
1,365,076	+		GFF1341	0.53	-1.7
1,365,091	+		GFF1341	0.54	-0.6
1,365,091	+		GFF1341	0.54	+0.2
1,365,091	+		GFF1341	0.54	+1.0
1,365,091	+		GFF1341	0.54	+1.0
1,365,091	+		GFF1341	0.54	+1.7
1,365,099	-		GFF1341	0.55	-0.3
1,365,104	+		GFF1341	0.55	-2.1
1,365,104	+		GFF1341	0.55	+0.1
1,365,104	+		GFF1341	0.55	-0.1
1,365,104	+		GFF1341	0.55	+0.3
1,365,104	-		GFF1341	0.55	-0.2
1,365,105	-		GFF1341	0.55	-0.3
1,365,148	-		GFF1341	0.59	-0.8
1,365,163	-		GFF1341	0.60	-1.8
1,365,186	+		GFF1341	0.62	+0.2
1,365,186	+		GFF1341	0.62	-0.4
1,365,200	+		GFF1341	0.63	-1.6
1,365,207	+		GFF1341	0.64	+0.5
1,365,207	+		GFF1341	0.64	-2.4
1,365,220	-		GFF1341	0.65	-1.3
1,365,220	-		GFF1341	0.65	+0.1
1,365,222	+		GFF1341	0.65	+0.2
1,365,230	-		GFF1341	0.66	-0.0
1,365,230	-		GFF1341	0.66	+0.7
1,365,249	-		GFF1341	0.67	+0.7
1,365,263	+		GFF1341	0.68	+0.2
1,365,315	+		GFF1341	0.73	+1.8
1,365,325	+		GFF1341	0.73	-0.1
1,365,341	-		GFF1341	0.75	-1.8
1,365,341	-		GFF1341	0.75	-1.1
1,365,346	-		GFF1341	0.75	-0.8
1,365,346	-		GFF1341	0.75	-0.6
1,365,350	-		GFF1341	0.75	+0.2
1,365,353	-		GFF1341	0.76	+0.2
1,365,379	-		GFF1341	0.78	-0.1
1,365,414	+		GFF1341	0.81	-0.5
1,365,414	+		GFF1341	0.81	+0.4
1,365,414	+		GFF1341	0.81	-0.4
1,365,420	-		GFF1341	0.81	+1.3
1,365,420	-		GFF1341	0.81	+0.6
1,365,420	-		GFF1341	0.81	-1.9
1,365,420	-		GFF1341	0.81	-2.0
1,365,453	+		GFF1341	0.84	+0.4
1,365,453	+		GFF1341	0.84	-1.1
1,365,453	+		GFF1341	0.84	+1.4
1,365,466	-		GFF1341	0.85	-0.6
1,365,481	-		GFF1341	0.86	-1.9
1,365,481	-		GFF1341	0.86	-0.6
1,365,481	-		GFF1341	0.86	-1.4
1,365,487	+		GFF1341	0.87	+0.2
1,365,495	-		GFF1341	0.87	-0.3
1,365,495	-		GFF1341	0.87	-0.1
1,365,505	-		GFF1341	0.88	+0.3
1,365,523	+		GFF1341	0.90	-2.6
1,365,523	+		GFF1341	0.90	-0.3
1,365,523	+		GFF1341	0.90	+0.2
1,365,531	-				-0.1
1,365,531	-				+0.4
1,365,531	-				-1.3
1,365,531	-				-0.2
1,365,532	-				-0.7
1,365,533	+				-1.4
1,365,534	+				-0.1
1,365,535	+				+1.3
1,365,535	+				-0.0
1,365,551	+				+0.6
1,365,558	+				+0.9
1,365,559	-				+0.3
1,365,559	-				-0.0
1,365,566	-				-0.0
1,365,566	-				-0.4
1,365,566	-				-0.6
1,365,566	-				-0.6
1,365,566	-				-0.5
1,365,566	-				+0.9
1,365,574	+				+0.5
1,365,574	+				-1.8
1,365,579	+				-0.1
1,365,579	+				+0.2
1,365,580	+				-1.6
1,365,582	-				-0.9
1,365,587	-				-0.1
1,365,587	-				-0.6
1,365,588	-				+1.6
1,365,588	-				-0.1
1,365,592	-				-2.6
1,365,601	+				-0.6
1,365,602	+				-2.9
1,365,602	+				-2.6
1,365,609	-				+0.2
1,365,609	-				-0.3
1,365,625	+				+0.0
1,365,628	-				+1.1
1,365,631	-				+0.5
1,365,631	-				-0.8
1,365,633	-				-0.2
1,365,636	-				+0.8
1,365,642	-				+1.7
1,365,648	-				-2.3
1,365,658	+				-2.8
1,365,671	-				+0.6
1,365,697	+				-0.5
1,365,702	+				-1.5
1,365,702	+				-0.9
1,365,702	+				-1.8
1,365,702	+				-2.1
1,365,702	+				+0.5
1,365,705	-				+0.4
1,365,707	+				+0.7
1,365,707	+				+0.2
1,365,712	+				-0.6
1,365,712	+				+0.6
1,365,720	-				-1.6
1,365,786	+		GFF1342	0.13	-0.4
1,365,793	-		GFF1342	0.14	-0.5
1,365,806	+		GFF1342	0.15	+0.1
1,365,815	-		GFF1342	0.16	-0.2
1,365,824	-		GFF1342	0.17	-0.6
1,365,842	-		GFF1342	0.19	-1.2
1,365,842	-		GFF1342	0.19	+0.6
1,365,842	-		GFF1342	0.19	-0.5
1,365,842	-		GFF1342	0.19	+0.5
1,365,873	+		GFF1342	0.21	+1.0
1,365,874	+		GFF1342	0.22	+0.3
1,365,882	-		GFF1342	0.22	-1.2
1,365,882	-		GFF1342	0.22	-2.8
1,365,917	-		GFF1342	0.26	-0.2
1,365,941	+		GFF1342	0.28	-1.1
1,365,949	-		GFF1342	0.29	-1.7
1,365,960	+		GFF1342	0.30	+0.9
1,365,968	-		GFF1342	0.30	-0.8
1,365,968	-		GFF1342	0.30	+0.7
1,365,968	-		GFF1342	0.30	-0.4
1,365,975	-		GFF1342	0.31	-0.3
1,365,985	-		GFF1342	0.32	+0.4
1,365,987	+		GFF1342	0.32	-0.4
1,366,037	+		GFF1342	0.37	+0.9
1,366,037	+		GFF1342	0.37	+0.4
1,366,037	+		GFF1342	0.37	+0.4
1,366,037	+		GFF1342	0.37	+0.7
1,366,037	+		GFF1342	0.37	-0.7
1,366,040	-		GFF1342	0.37	+0.3
1,366,045	-		GFF1342	0.38	+0.6
1,366,045	-		GFF1342	0.38	+0.2
1,366,071	+		GFF1342	0.40	-0.1
1,366,079	-		GFF1342	0.41	+0.8
1,366,080	+		GFF1342	0.41	+0.1
1,366,080	+		GFF1342	0.41	-0.6
1,366,083	-		GFF1342	0.41	+0.0
1,366,099	+		GFF1342	0.43	+0.5
1,366,099	+		GFF1342	0.43	-0.0
1,366,099	+		GFF1342	0.43	-0.7
1,366,099	+		GFF1342	0.43	+1.2
1,366,099	+		GFF1342	0.43	+0.2
1,366,099	+		GFF1342	0.43	+0.5
1,366,099	+		GFF1342	0.43	-2.1
1,366,099	+		GFF1342	0.43	-1.7
1,366,107	-		GFF1342	0.44	-0.1
1,366,107	-		GFF1342	0.44	+0.2
1,366,107	-		GFF1342	0.44	+0.1
1,366,107	-		GFF1342	0.44	+0.8
1,366,107	-		GFF1342	0.44	-0.6
1,366,107	-		GFF1342	0.44	+0.3
1,366,107	-		GFF1342	0.44	+0.2
1,366,109	+		GFF1342	0.44	+0.1
1,366,109	+		GFF1342	0.44	-0.4
1,366,117	-		GFF1342	0.45	+0.4
1,366,118	-		GFF1342	0.45	-1.2
1,366,136	+		GFF1342	0.46	+0.1
1,366,137	-		GFF1342	0.46	+0.6
1,366,144	-		GFF1342	0.47	-0.7
1,366,153	-		GFF1342	0.48	-1.3
1,366,163	-		GFF1342	0.49	+0.2
1,366,171	+		GFF1342	0.50	-1.2
1,366,179	-		GFF1342	0.50	-0.5
1,366,182	+		GFF1342	0.51	+0.1
1,366,190	-		GFF1342	0.52	-0.2
1,366,204	-		GFF1342	0.53	-0.4
1,366,206	+		GFF1342	0.53	-1.3
1,366,212	-		GFF1342	0.54	-1.5
1,366,216	+		GFF1342	0.54	+0.4
1,366,218	+		GFF1342	0.54	-1.1
1,366,221	+		GFF1342	0.54	-1.2
1,366,224	-		GFF1342	0.55	+0.8
1,366,229	-		GFF1342	0.55	-1.8
1,366,230	+		GFF1342	0.55	+0.2
1,366,230	+		GFF1342	0.55	+0.3
1,366,230	+		GFF1342	0.55	-0.3
1,366,230	+		GFF1342	0.55	-1.3
1,366,230	+		GFF1342	0.55	+1.1
1,366,230	+		GFF1342	0.55	-0.3
1,366,230	+		GFF1342	0.55	-1.5
1,366,230	+		GFF1342	0.55	-1.9
1,366,238	-		GFF1342	0.56	-2.0
1,366,238	-		GFF1342	0.56	-1.8
1,366,238	-		GFF1342	0.56	+0.4
1,366,238	-		GFF1342	0.56	+0.6
1,366,238	-		GFF1342	0.56	+0.5
1,366,238	-		GFF1342	0.56	-1.5
1,366,238	-		GFF1342	0.56	-0.2
1,366,256	+		GFF1342	0.58	-0.3
1,366,269	+		GFF1342	0.59	+0.5
1,366,286	+		GFF1342	0.61	-0.6
1,366,290	+		GFF1342	0.61	+0.1
1,366,298	-		GFF1342	0.62	-0.7
1,366,298	-		GFF1342	0.62	-1.3
1,366,298	-		GFF1342	0.62	+0.4
1,366,298	-		GFF1342	0.62	+0.1
1,366,298	-		GFF1342	0.62	-1.1
1,366,320	+		GFF1342	0.64	-0.3
1,366,320	+		GFF1342	0.64	-1.1
1,366,328	-		GFF1342	0.65	-2.3
1,366,336	-		GFF1342	0.65	-1.0
1,366,341	-		GFF1342	0.66	+0.2
1,366,342	-		GFF1342	0.66	-0.0
1,366,379	+		GFF1342	0.69	-0.5
1,366,379	+		GFF1342	0.69	+0.5
1,366,384	+		GFF1342	0.70	-1.5
1,366,388	+		GFF1342	0.70	+0.1
1,366,389	+		GFF1342	0.70	+0.7
1,366,389	+		GFF1342	0.70	-0.3
1,366,392	-		GFF1342	0.71	-0.2
1,366,396	-		GFF1342	0.71	+1.2
1,366,434	+		GFF1342	0.75	+0.8
1,366,442	-		GFF1342	0.75	-0.0
1,366,481	-		GFF1342	0.79	+0.2
1,366,482	-		GFF1342	0.79	-1.8
1,366,506	-		GFF1342	0.81	-1.1
1,366,532	+		GFF1342	0.84	-0.3
1,366,542	+		GFF1342	0.85	-0.1
1,366,580	+		GFF1342	0.88	+0.7
1,366,590	+		GFF1342	0.89	+1.5
1,366,590	+		GFF1342	0.89	-0.1
1,366,598	+				-0.7
1,366,598	-				-0.1
1,366,598	-				+1.5
1,366,609	+				-1.5
1,366,610	+				-0.8
1,366,610	+				+0.3
1,366,610	+				-1.8
1,366,617	-				+0.2
1,366,618	-				-1.8
1,366,618	-				+2.1
1,366,618	-				+0.4
1,366,635	+				-1.0
1,366,640	+				+1.0
1,366,641	-				+0.2
1,366,646	+				-0.2
1,366,648	-				+0.2
1,366,648	-				-0.0
1,366,667	+				+0.3
1,366,690	+				-0.3
1,366,690	+				-0.9
1,366,690	+				-0.8
1,366,690	+				-0.0
1,366,696	+				-0.4
1,366,698	-				+1.2
1,366,698	-				-1.5
1,366,700	+				+1.3
1,366,704	-				+0.6
1,366,705	+				+0.3
1,366,708	-				+1.2
1,366,708	-				-0.1
1,366,708	-				-0.4
1,366,710	+				+0.9
1,366,785	-		GFF1343	0.13	-0.3
1,366,791	+		GFF1343	0.15	-0.0
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1,367,177	+				-0.6
1,367,177	+				-2.6
1,367,177	+				+1.2
1,367,177	+				+0.6
1,367,177	+				-1.1
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1,367,202	-				+0.2
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1,367,607	+				-1.6
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