Strain Fitness in Sphingobium sp. HT1-2 around GFF1289

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,315,749	-				+0.4
1,315,750	+				+1.7
1,315,750	+				+0.4
1,315,774	+				-0.9
1,315,774	+				-2.8
1,315,774	+				-0.1
1,315,774	+				+1.1
1,315,782	-				-0.9
1,315,789	+				+0.4
1,315,792	-				-0.1
1,315,811	+				+1.1
1,315,816	+				-0.4
1,315,819	-		GFF1288	0.10	-0.7
1,315,829	-		GFF1288	0.11	+0.1
1,315,845	+		GFF1288	0.13	+0.2
1,315,851	-		GFF1288	0.13	-0.5
1,315,861	-		GFF1288	0.14	-0.3
1,315,869	+		GFF1288	0.15	+0.2
1,315,888	+		GFF1288	0.17	+0.2
1,315,894	+		GFF1288	0.17	+0.4
1,315,895	+		GFF1288	0.18	-1.2
1,315,902	+		GFF1288	0.18	+0.8
1,315,928	+		GFF1288	0.21	-1.6
1,315,928	+		GFF1288	0.21	-1.0
1,315,928	+		GFF1288	0.21	+0.5
1,315,928	+		GFF1288	0.21	-0.0
1,315,928	+		GFF1288	0.21	+1.1
1,315,928	+		GFF1288	0.21	-0.9
1,315,928	+		GFF1288	0.21	+0.9
1,315,928	+		GFF1288	0.21	-0.5
1,315,928	+		GFF1288	0.21	-0.8
1,315,928	+		GFF1288	0.21	+0.6
1,315,928	+		GFF1288	0.21	-0.5
1,315,936	-		GFF1288	0.22	-0.8
1,315,936	-		GFF1288	0.22	-0.6
1,315,936	-		GFF1288	0.22	+1.2
1,315,936	-		GFF1288	0.22	+0.2
1,315,936	-		GFF1288	0.22	+1.4
1,315,936	-		GFF1288	0.22	+0.1
1,315,973	+		GFF1288	0.25	+0.3
1,315,978	+		GFF1288	0.26	+0.5
1,315,978	+		GFF1288	0.26	+1.9
1,315,978	+		GFF1288	0.26	+1.2
1,315,981	-		GFF1288	0.26	+0.7
1,315,983	+		GFF1288	0.26	+0.5
1,315,983	+		GFF1288	0.26	-1.6
1,315,983	+		GFF1288	0.26	+0.2
1,315,986	-		GFF1288	0.26	-1.9
1,315,986	-		GFF1288	0.26	+0.8
1,315,986	-		GFF1288	0.26	-1.5
1,315,986	-		GFF1288	0.26	+1.3
1,315,986	-		GFF1288	0.26	-0.3
1,315,986	-		GFF1288	0.26	-1.1
1,315,986	-		GFF1288	0.26	-0.7
1,315,991	-		GFF1288	0.27	-2.3
1,315,997	+		GFF1288	0.28	+0.5
1,316,018	+		GFF1288	0.30	-2.1
1,316,019	+		GFF1288	0.30	-0.5
1,316,019	+		GFF1288	0.30	+0.1
1,316,026	-		GFF1288	0.30	-0.4
1,316,033	-		GFF1288	0.31	-0.4
1,316,049	-		GFF1288	0.33	+1.0
1,316,081	-		GFF1288	0.36	-0.2
1,316,085	-		GFF1288	0.36	+0.2
1,316,090	+		GFF1288	0.37	-1.1
1,316,090	+		GFF1288	0.37	+0.1
1,316,095	+		GFF1288	0.37	+1.1
1,316,095	+		GFF1288	0.37	-1.1
1,316,098	-		GFF1288	0.37	-0.4
1,316,098	-		GFF1288	0.37	-0.6
1,316,098	-		GFF1288	0.37	+0.2
1,316,098	-		GFF1288	0.37	-0.3
1,316,098	-		GFF1288	0.37	+1.2
1,316,098	-		GFF1288	0.37	-0.6
1,316,098	-		GFF1288	0.37	+0.9
1,316,098	-		GFF1288	0.37	+0.4
1,316,098	-		GFF1288	0.37	-0.3
1,316,119	-		GFF1288	0.39	-1.6
1,316,140	-		GFF1288	0.42	-2.8
1,316,144	+		GFF1288	0.42	-1.1
1,316,147	-		GFF1288	0.42	-1.9
1,316,152	-		GFF1288	0.43	-1.8
1,316,165	-		GFF1288	0.44	+1.4
1,316,165	-		GFF1288	0.44	-1.1
1,316,165	-		GFF1288	0.44	-0.0
1,316,173	-		GFF1288	0.45	-2.2
1,316,188	-		GFF1288	0.46	+0.7
1,316,208	+		GFF1288	0.48	-0.1
1,316,210	+		GFF1288	0.48	+0.8
1,316,210	+		GFF1288	0.48	+0.1
1,316,279	+		GFF1288	0.55	+0.7
1,316,294	-		GFF1288	0.57	+1.1
1,316,304	-		GFF1288	0.58	-0.0
1,316,312	+		GFF1288	0.58	-0.8
1,316,318	-		GFF1288	0.59	-0.3
1,316,320	+		GFF1288	0.59	-1.0
1,316,320	-		GFF1288	0.59	+0.6
1,316,325	+		GFF1288	0.60	+0.2
1,316,325	+		GFF1288	0.60	-1.1
1,316,328	-		GFF1288	0.60	+0.8
1,316,346	+		GFF1288	0.62	-0.5
1,316,346	+		GFF1288	0.62	-0.5
1,316,349	-		GFF1288	0.62	-1.3
1,316,354	-		GFF1288	0.62	+1.2
1,316,370	+		GFF1288	0.64	+0.8
1,316,378	-		GFF1288	0.65	-1.3
1,316,399	-		GFF1288	0.67	+0.8
1,316,399	-		GFF1288	0.67	+0.3
1,316,430	-		GFF1288	0.70	-0.1
1,316,430	-		GFF1288	0.70	-0.5
1,316,436	+		GFF1288	0.70	-0.9
1,316,457	-		GFF1288	0.73	-0.8
1,316,482	+		GFF1288	0.75	-1.7
1,316,482	+		GFF1288	0.75	-2.5
1,316,482	+		GFF1288	0.75	+0.9
1,316,482	+		GFF1288	0.75	+0.3
1,316,488	+		GFF1288	0.76	-0.9
1,316,488	+		GFF1288	0.76	+0.5
1,316,490	-		GFF1288	0.76	+0.4
1,316,566	-		GFF1288	0.83	+0.2
1,316,597	+		GFF1288	0.86	+0.8
1,316,597	+		GFF1288	0.86	-0.5
1,316,602	+		GFF1288	0.87	+0.2
1,316,602	+		GFF1288	0.87	+0.3
1,316,605	-		GFF1288	0.87	-2.2
1,316,639	+				-1.4
1,316,639	+				-1.1
1,316,647	-				-1.3
1,316,647	-				+1.6
1,316,647	-				-1.5
1,316,647	-				-0.5
1,316,647	-				-0.5
1,316,659	-				-0.9
1,316,664	+				+0.3
1,316,692	+				+1.0
1,316,700	-				+0.1
1,316,708	+				-0.1
1,316,710	-				+0.0
1,316,711	-				+1.5
1,316,716	-				-0.4
1,316,716	-				-0.8
1,318,661	+				-0.0
1,318,661	+				-0.8
1,318,669	-				+0.3
1,318,675	+				-0.9
1,318,679	+				-1.1
1,318,682	-				-0.7
1,318,692	+				+0.4
1,318,697	+				-0.5
1,318,697	+				+1.0
1,318,697	+				-2.0
1,318,697	+				+0.5
1,318,697	+				-0.9
1,318,697	+				+1.0
1,318,697	+				+0.4
1,318,697	+				-1.6
1,318,697	+				+0.6
1,318,697	+				+0.7
1,318,697	+				-0.8
1,318,702	+				-1.5
1,318,705	-				-1.2
1,318,705	-				-1.1
1,318,705	-				-0.6
1,318,705	-				-2.1
1,318,707	+				-0.4
1,318,732	-				-0.3
1,318,732	-				+1.0
1,318,737	+				+0.1
1,318,737	+				+0.8
1,318,739	+				-0.2
1,318,739	+				+0.4
1,318,742	+				-0.7
1,318,747	+				-1.4
1,318,750	-				+0.6
1,318,757	-				+0.7
1,318,759	+				+0.9
1,318,781	+				-0.2
1,318,872	-				-1.8
1,318,885	-				+0.6
1,318,963	+		GFF1290	0.15	-1.1
1,318,976	-		GFF1290	0.16	+0.8
1,318,980	+		GFF1290	0.16	-2.3
1,318,985	+		GFF1290	0.16	+0.7
1,318,988	-		GFF1290	0.17	-2.5
1,318,993	-		GFF1290	0.17	+0.1
1,319,015	+		GFF1290	0.18	-2.1
1,319,023	-		GFF1290	0.19	+0.3
1,319,031	+		GFF1290	0.20	+0.7
1,319,119	+		GFF1290	0.25	-1.5
1,319,124	+		GFF1290	0.26	+0.7
1,319,129	+		GFF1290	0.26	+0.5
1,319,129	+		GFF1290	0.26	-1.4
1,319,129	+		GFF1290	0.26	-0.2
1,319,129	+		GFF1290	0.26	-1.3
1,319,130	-		GFF1290	0.26	-0.2
1,319,130	-		GFF1290	0.26	+0.2
1,319,137	-		GFF1290	0.27	+0.5
1,319,142	-		GFF1290	0.27	-0.2
1,319,156	+		GFF1290	0.28	+0.3
1,319,156	+		GFF1290	0.28	+0.7
1,319,164	-		GFF1290	0.28	-0.0
1,319,164	-		GFF1290	0.28	+1.0
1,319,177	+		GFF1290	0.29	+0.5
1,319,183	+		GFF1290	0.30	+0.5
1,319,184	+		GFF1290	0.30	+0.4
1,319,192	-		GFF1290	0.30	-1.3
1,319,198	-		GFF1290	0.31	-1.9
1,319,198	-		GFF1290	0.31	-2.9
1,319,202	+		GFF1290	0.31	-0.6
1,319,220	+		GFF1290	0.32	-0.3
1,319,260	+		GFF1290	0.35	-1.7
1,319,262	-		GFF1290	0.35	-1.1
1,319,306	-		GFF1290	0.38	+0.2
1,319,312	-		GFF1290	0.38	+0.3
1,319,335	+		GFF1290	0.40	-0.3
1,319,378	+		GFF1290	0.43	-0.2
1,319,378	+		GFF1290	0.43	-0.1
1,319,378	+		GFF1290	0.43	-1.5
1,319,383	+		GFF1290	0.43	-0.1
1,319,383	+		GFF1290	0.43	+0.6
1,319,383	+		GFF1290	0.43	-0.7
1,319,383	+		GFF1290	0.43	-0.2
1,319,386	-		GFF1290	0.43	+1.0
1,319,386	-		GFF1290	0.43	-0.3
1,319,386	-		GFF1290	0.43	-0.5
1,319,386	-		GFF1290	0.43	-0.1
1,319,386	-		GFF1290	0.43	-1.1
1,319,391	-		GFF1290	0.44	-1.9
1,319,404	-		GFF1290	0.45	-1.1
1,319,411	+		GFF1290	0.45	-1.4
1,319,411	+		GFF1290	0.45	+0.1
1,319,419	-		GFF1290	0.46	-0.8
1,319,424	+		GFF1290	0.46	-0.9
1,319,424	+		GFF1290	0.46	-1.3
1,319,432	-		GFF1290	0.47	+1.0
1,319,432	-		GFF1290	0.47	-0.0
1,319,432	-		GFF1290	0.47	+0.6
1,319,436	-		GFF1290	0.47	+0.1
1,319,436	-		GFF1290	0.47	-0.6
1,319,463	+		GFF1290	0.49	-0.8
1,319,526	-		GFF1290	0.53	+0.6
1,319,542	+		GFF1290	0.54	+0.2
1,319,542	+		GFF1290	0.54	+1.0
1,319,550	-		GFF1290	0.54	-0.7
1,319,550	-		GFF1290	0.54	-1.0
1,319,555	+		GFF1290	0.55	+1.0
1,319,555	+		GFF1290	0.55	+0.9
1,319,555	+		GFF1290	0.55	-0.7
1,319,587	+		GFF1290	0.57	+0.2
1,319,587	+		GFF1290	0.57	-1.4
1,319,604	-		GFF1290	0.58	+0.4
1,319,606	+		GFF1290	0.58	-1.1
1,319,606	+		GFF1290	0.58	-0.3
1,319,606	+		GFF1290	0.58	+0.6
1,319,606	+		GFF1290	0.58	+0.0
1,319,606	+		GFF1290	0.58	+1.8
1,319,606	+		GFF1290	0.58	-0.4
1,319,606	+		GFF1290	0.58	-2.4
1,319,606	+		GFF1290	0.58	-0.0
1,319,606	+		GFF1290	0.58	+1.5
1,319,606	+		GFF1290	0.58	+0.3
1,319,610	+		GFF1290	0.58	-0.8
1,319,614	-		GFF1290	0.59	+0.6
1,319,614	-		GFF1290	0.59	-1.2
1,319,614	-		GFF1290	0.59	-0.5
1,319,614	-		GFF1290	0.59	-2.1
1,319,614	-		GFF1290	0.59	-1.0
1,319,614	-		GFF1290	0.59	+0.5
1,319,614	-		GFF1290	0.59	-0.5
1,319,648	-		GFF1290	0.61	-1.7
1,319,650	-		GFF1290	0.61	+0.4