Strain Fitness in Sphingobium sp. HT1-2 around GFF1253

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,280,092	+		GFF1252	0.16	-0.3
1,280,100	-		GFF1252	0.17	+1.1
1,280,100	-		GFF1252	0.17	-0.4
1,280,100	-		GFF1252	0.17	+0.2
1,280,100	-		GFF1252	0.17	+0.6
1,280,107	+		GFF1252	0.17	-1.0
1,280,107	+		GFF1252	0.17	+0.5
1,280,111	+		GFF1252	0.18	-0.8
1,280,111	+		GFF1252	0.18	+0.4
1,280,111	+		GFF1252	0.18	+0.4
1,280,115	-		GFF1252	0.18	+0.6
1,280,115	-		GFF1252	0.18	+0.3
1,280,119	-		GFF1252	0.18	-2.3
1,280,137	+		GFF1252	0.20	-0.3
1,280,142	+		GFF1252	0.20	-1.9
1,280,145	-		GFF1252	0.21	+0.4
1,280,159	+		GFF1252	0.22	-0.7
1,280,167	-		GFF1252	0.23	-0.2
1,280,167	-		GFF1252	0.23	-1.4
1,280,190	-		GFF1252	0.25	+0.2
1,280,196	+		GFF1252	0.25	-0.9
1,280,214	+		GFF1252	0.27	-1.1
1,280,249	+		GFF1252	0.30	+0.4
1,280,249	+		GFF1252	0.30	+0.9
1,280,249	+		GFF1252	0.30	-0.0
1,280,250	-		GFF1252	0.30	+0.8
1,280,270	+		GFF1252	0.31	+0.7
1,280,275	-		GFF1252	0.32	-2.0
1,280,298	+		GFF1252	0.34	-1.2
1,280,298	+		GFF1252	0.34	+1.0
1,280,306	-		GFF1252	0.35	-1.9
1,280,306	-		GFF1252	0.35	-0.6
1,280,306	-		GFF1252	0.35	+0.1
1,280,328	+		GFF1252	0.36	+1.4
1,280,337	+		GFF1252	0.37	-1.4
1,280,337	+		GFF1252	0.37	+0.4
1,280,349	+		GFF1252	0.38	+0.8
1,280,350	-		GFF1252	0.38	+1.6
1,280,355	-		GFF1252	0.39	-0.8
1,280,394	+		GFF1252	0.42	+0.1
1,280,394	+		GFF1252	0.42	-0.8
1,280,394	+		GFF1252	0.42	+0.8
1,280,402	-		GFF1252	0.43	+0.6
1,280,402	-		GFF1252	0.43	-2.3
1,280,406	+		GFF1252	0.43	-0.7
1,280,429	+		GFF1252	0.45	-1.2
1,280,429	+		GFF1252	0.45	-0.5
1,280,429	+		GFF1252	0.45	+0.0
1,280,434	+		GFF1252	0.46	-0.5
1,280,437	-		GFF1252	0.46	+0.2
1,280,437	-		GFF1252	0.46	-1.4
1,280,437	-		GFF1252	0.46	-0.3
1,280,439	+		GFF1252	0.46	+1.1
1,280,442	-		GFF1252	0.46	-1.7
1,280,442	-		GFF1252	0.46	+0.8
1,280,450	+		GFF1252	0.47	-0.2
1,280,450	+		GFF1252	0.47	-0.4
1,280,459	-		GFF1252	0.48	-1.8
1,280,459	-		GFF1252	0.48	-0.2
1,280,462	+		GFF1252	0.48	-2.5
1,280,467	+		GFF1252	0.48	+0.6
1,280,467	+		GFF1252	0.48	+0.5
1,280,468	+		GFF1252	0.49	-1.6
1,280,470	-		GFF1252	0.49	-1.3
1,280,470	-		GFF1252	0.49	-0.6
1,280,475	-		GFF1252	0.49	-0.6
1,280,483	+		GFF1252	0.50	-0.2
1,280,491	-		GFF1252	0.51	-1.1
1,280,501	+		GFF1252	0.51	-0.2
1,280,509	-		GFF1252	0.52	-0.5
1,280,509	-		GFF1252	0.52	+0.4
1,280,546	-		GFF1252	0.55	-1.3
1,280,561	+		GFF1252	0.57	-0.4
1,280,561	+		GFF1252	0.57	-1.5
1,280,567	-		GFF1252	0.57	+0.4
1,280,569	-		GFF1252	0.57	-0.0
1,280,569	-		GFF1252	0.57	+0.6
1,280,569	-		GFF1252	0.57	-2.8
1,280,571	+		GFF1252	0.57	-0.5
1,280,585	+		GFF1252	0.59	+0.2
1,280,585	+		GFF1252	0.59	+0.3
1,280,585	+		GFF1252	0.59	+0.2
1,280,591	-		GFF1252	0.59	-1.1
1,280,593	-		GFF1252	0.59	-0.1
1,280,593	-		GFF1252	0.59	+0.5
1,280,593	-		GFF1252	0.59	-0.8
1,280,593	-		GFF1252	0.59	-0.1
1,280,594	+		GFF1252	0.59	+0.2
1,280,604	+		GFF1252	0.60	+0.8
1,280,624	+		GFF1252	0.62	-0.2
1,280,624	+		GFF1252	0.62	-0.3
1,280,624	+		GFF1252	0.62	+0.1
1,280,624	+		GFF1252	0.62	-0.1
1,280,624	+		GFF1252	0.62	-0.1
1,280,632	-		GFF1252	0.63	+0.3
1,280,632	-		GFF1252	0.63	+1.7
1,280,668	+		GFF1252	0.66	-2.3
1,280,668	+		GFF1252	0.66	-0.1
1,280,673	+		GFF1252	0.66	+0.4
1,280,673	+		GFF1252	0.66	-0.9
1,280,676	-		GFF1252	0.66	-0.3
1,280,676	-		GFF1252	0.66	-0.2
1,280,681	-		GFF1252	0.67	-0.9
1,280,681	-		GFF1252	0.67	+0.1
1,280,681	-		GFF1252	0.67	+1.1
1,280,681	-		GFF1252	0.67	+0.3
1,280,681	-		GFF1252	0.67	-1.8
1,280,682	-		GFF1252	0.67	-2.0
1,280,683	+		GFF1252	0.67	-1.4
1,280,686	-		GFF1252	0.67	-1.2
1,280,688	-		GFF1252	0.68	-0.7
1,280,699	+		GFF1252	0.68	-0.3
1,280,699	+		GFF1252	0.68	+0.5
1,280,707	-		GFF1252	0.69	+0.0
1,280,707	-		GFF1252	0.69	-0.9
1,280,707	-		GFF1252	0.69	-2.0
1,280,707	-		GFF1252	0.69	-0.2
1,280,707	-		GFF1252	0.69	-0.9
1,280,707	-		GFF1252	0.69	+0.3
1,280,707	-		GFF1252	0.69	-0.8
1,280,707	-		GFF1252	0.69	-0.3
1,280,716	+		GFF1252	0.70	-0.4
1,280,766	-		GFF1252	0.74	-2.0
1,280,795	+		GFF1252	0.77	+1.2
1,280,838	+		GFF1252	0.80	-0.3
1,280,839	+		GFF1252	0.81	-0.1
1,280,846	-		GFF1252	0.81	+0.0
1,280,874	+		GFF1252	0.84	-0.3
1,280,881	+		GFF1252	0.84	-1.9
1,280,883	+		GFF1252	0.84	-0.4
1,280,884	-		GFF1252	0.84	-0.3
1,280,900	-		GFF1252	0.86	-0.2
1,280,910	-		GFF1252	0.87	-1.3
1,280,917	+		GFF1252	0.87	+0.4
1,280,925	-		GFF1252	0.88	+1.2
1,280,939	+		GFF1252	0.89	+0.4
1,280,947	-		GFF1252	0.90	+1.0
1,280,962	+				-0.3
1,280,965	-				-1.4
1,280,965	-				+0.2
1,280,982	+				-0.5
1,280,990	-				+0.8
1,281,018	+				+1.2
1,281,018	+				-0.7
1,281,018	+				-1.4
1,281,020	-				-1.3
1,281,026	-				-1.8
1,281,039	-				-2.0
1,281,040	+				-0.9
1,281,046	+				-0.4
1,281,046	+				+0.2
1,281,047	-				+0.6
1,281,049	+				-1.8
1,281,064	+				+0.7
1,281,070	-				-0.6
1,281,073	+				-0.0
1,281,073	+				-0.3
1,281,081	-				-3.2
1,281,102	+				-1.0
1,281,102	+				-2.2
1,281,102	+				-0.8
1,281,102	+				+0.4
1,281,110	-				-0.9
1,281,110	-				+0.0
1,281,110	-				-0.6
1,281,110	-				-0.2
1,281,110	-				-0.2
1,281,110	-				-0.2
1,281,125	-				+0.1
1,281,126	+				-0.4
1,281,160	-				-0.2
1,281,167	+				-0.7
1,281,167	-				-0.9
1,281,231	+		GFF1253	0.17	+0.8
1,281,232	+		GFF1253	0.18	-0.2
1,281,253	+		GFF1253	0.20	+0.2
1,281,258	+		GFF1253	0.21	-1.4
1,281,258	+		GFF1253	0.21	-2.3
1,281,258	+		GFF1253	0.21	-0.6
1,281,266	-		GFF1253	0.22	-1.0
1,281,302	-		GFF1253	0.26	-0.5
1,281,302	-		GFF1253	0.26	-0.6
1,281,314	+		GFF1253	0.27	+0.4
1,281,316	-		GFF1253	0.27	+0.8
1,281,319	+		GFF1253	0.28	-2.7
1,281,319	+		GFF1253	0.28	-1.5
1,281,319	+		GFF1253	0.28	-0.4
1,281,327	-		GFF1253	0.29	-1.1
1,281,333	+		GFF1253	0.29	+0.7
1,281,338	+		GFF1253	0.30	+0.5
1,281,338	+		GFF1253	0.30	+0.3
1,281,352	+		GFF1253	0.32	+0.1
1,281,352	+		GFF1253	0.32	-0.2
1,281,352	+		GFF1253	0.32	-0.5
1,281,352	+		GFF1253	0.32	-0.7
1,281,352	+		GFF1253	0.32	-0.2
1,281,352	+		GFF1253	0.32	-0.1
1,281,360	-		GFF1253	0.33	-0.0
1,281,360	-		GFF1253	0.33	-2.3
1,281,360	-		GFF1253	0.33	+1.2
1,281,360	-		GFF1253	0.33	+0.4
1,281,360	-		GFF1253	0.33	-1.7
1,281,360	-		GFF1253	0.33	-0.3
1,281,360	-		GFF1253	0.33	+1.6
1,281,360	-		GFF1253	0.33	+0.6
1,281,360	-		GFF1253	0.33	-1.7
1,281,374	+		GFF1253	0.34	-1.2
1,281,374	+		GFF1253	0.34	-0.3
1,281,381	-		GFF1253	0.35	-0.3
1,281,381	-		GFF1253	0.35	-0.4
1,281,381	-		GFF1253	0.35	-0.7
1,281,386	+		GFF1253	0.36	+0.1
1,281,391	+		GFF1253	0.36	+1.1
1,281,420	-		GFF1253	0.40	+0.2
1,281,453	+		GFF1253	0.44	-0.6
1,281,453	+		GFF1253	0.44	-0.6
1,281,453	+		GFF1253	0.44	+0.3
1,281,453	+		GFF1253	0.44	+0.6
1,281,453	+		GFF1253	0.44	+1.2
1,281,453	+		GFF1253	0.44	+0.1
1,281,461	-		GFF1253	0.45	-0.4
1,281,461	-		GFF1253	0.45	+0.5
1,281,461	-		GFF1253	0.45	+1.6
1,281,473	-		GFF1253	0.46	+0.3
1,281,491	+		GFF1253	0.48	+0.1
1,281,491	+		GFF1253	0.48	-0.3
1,281,491	+		GFF1253	0.48	+0.3
1,281,491	+		GFF1253	0.48	-0.4
1,281,491	+		GFF1253	0.48	+0.1
1,281,491	+		GFF1253	0.48	-1.3
1,281,491	+		GFF1253	0.48	-0.3
1,281,499	-		GFF1253	0.49	-0.6
1,281,499	-		GFF1253	0.49	-0.8
1,281,499	-		GFF1253	0.49	-0.0
1,281,499	-		GFF1253	0.49	+0.1
1,281,499	-		GFF1253	0.49	-0.0
1,281,499	-		GFF1253	0.49	-0.4
1,281,499	-		GFF1253	0.49	+0.3
1,281,499	-		GFF1253	0.49	+0.5
1,281,501	-		GFF1253	0.49	-1.1
1,281,504	-		GFF1253	0.50	+0.9
1,281,509	-		GFF1253	0.50	+0.6
1,281,511	+		GFF1253	0.50	-0.9
1,281,513	-		GFF1253	0.51	-1.2
1,281,535	+		GFF1253	0.53	-1.1
1,281,535	+		GFF1253	0.53	-0.1
1,281,535	+		GFF1253	0.53	-0.0
1,281,543	-		GFF1253	0.54	+0.4
1,281,543	-		GFF1253	0.54	+0.6
1,281,543	-		GFF1253	0.54	+0.2
1,281,543	-		GFF1253	0.54	+0.5
1,281,543	-		GFF1253	0.54	+0.1
1,281,548	-		GFF1253	0.55	+1.3
1,281,559	+		GFF1253	0.56	-1.1
1,281,567	-		GFF1253	0.57	+0.1
1,281,567	-		GFF1253	0.57	-1.1
1,281,567	-		GFF1253	0.57	-1.5
1,281,591	-		GFF1253	0.60	-0.1
1,281,611	-		GFF1253	0.62	-0.2
1,281,622	-		GFF1253	0.63	-0.9
1,281,640	-		GFF1253	0.66	-1.9
1,281,655	-		GFF1253	0.67	-0.6
1,281,660	-		GFF1253	0.68	-1.2
1,281,677	+		GFF1253	0.70	-0.2
1,281,692	+		GFF1253	0.72	+0.0
1,281,699	-		GFF1253	0.73	+0.8
1,281,710	+		GFF1253	0.74	+0.2
1,281,718	+		GFF1253	0.75	-3.1
1,281,718	+		GFF1253	0.75	+0.4
1,281,718	+		GFF1253	0.75	-0.5
1,281,718	+		GFF1253	0.75	-0.2
1,281,718	+		GFF1253	0.75	-0.3
1,281,718	+		GFF1253	0.75	-0.5
1,281,718	+		GFF1253	0.75	+0.4
1,281,719	+		GFF1253	0.75	+1.3
1,281,719	+		GFF1253	0.75	-1.8
1,281,726	-		GFF1253	0.76	-1.9
1,281,726	-		GFF1253	0.76	-0.9
1,281,727	-		GFF1253	0.76	+0.8
1,281,727	-		GFF1253	0.76	+0.1
1,281,753	-		GFF1253	0.79	-0.4
1,281,764	-		GFF1253	0.80	-0.1
1,281,770	+		GFF1253	0.81	-0.3
1,281,778	-		GFF1253	0.82	+0.2
1,281,778	-		GFF1253	0.82	+0.2
1,281,785	-		GFF1253	0.83	-1.2
1,281,785	-		GFF1253	0.83	+0.9
1,281,789	+		GFF1253	0.83	-0.0
1,281,797	-		GFF1253	0.84	+0.4
1,281,797	-		GFF1253	0.84	-0.8
1,281,806	+		GFF1253	0.85	+0.1
1,281,806	+		GFF1253	0.85	+0.1
1,281,814	-		GFF1253	0.86	-1.1
1,281,815	-		GFF1253	0.86	+1.1
1,281,827	+		GFF1253	0.88	-0.2
1,281,834	+		GFF1253	0.88	+0.7
1,281,842	-		GFF1253	0.89	+1.4
1,281,843	-		GFF1253	0.90	-0.2
1,281,852	+				-0.5
1,281,860	-				-1.2
1,281,863	+				-0.7
1,281,863	+				+0.0
1,281,863	+				-0.5
1,281,863	+				+0.4
1,281,867	+				-2.4
1,281,870	-				-1.4
1,281,877	+				+0.7
1,281,900	-				-1.4
1,281,900	-				-0.6
1,281,901	+				-0.5
1,281,933	-				+0.4
1,281,933	-				-1.2
1,281,975	-				-0.2
1,281,979	-				-1.5
1,281,980	+				-0.1
1,281,981	+				-0.3
1,281,981	+				-0.8
1,281,981	+				-1.2
1,281,981	+				-0.9
1,281,981	+				-0.7
1,281,986	+				+0.1
1,281,986	+				+0.4
1,281,989	-				+0.3
1,281,989	-				+0.7
1,281,989	-				-3.6
1,281,989	-				+0.7
1,282,013	+				+0.0
1,282,013	+				-2.2
1,282,014	+				-1.1
1,282,021	-				-0.8
1,282,021	-				+0.4
1,282,021	-				+0.7
1,282,033	-				-0.1
1,282,040	-				-0.3
1,282,051	+				-0.6
1,282,059	+				-0.4
1,282,089	-		GFF1254	0.11	-0.2
1,282,100	+		GFF1254	0.12	+0.5
1,282,124	+		GFF1254	0.14	-0.3
1,282,124	+		GFF1254	0.14	+0.9
1,282,124	-		GFF1254	0.14	-0.7
1,282,132	-		GFF1254	0.14	-0.1
1,282,137	+		GFF1254	0.15	-0.5
1,282,161	+		GFF1254	0.16	+0.4
1,282,161	+		GFF1254	0.16	-1.6
1,282,169	-		GFF1254	0.17	+0.2
1,282,191	+		GFF1254	0.18	-0.1
1,282,201	+		GFF1254	0.19	+0.3
1,282,209	-		GFF1254	0.20	-0.1
1,282,283	+		GFF1254	0.25	-0.8
1,282,291	-		GFF1254	0.26	-0.2
1,282,295	-		GFF1254	0.26	-0.4
1,282,314	-		GFF1254	0.27	-0.7
1,282,325	+		GFF1254	0.28	-0.0
1,282,329	+		GFF1254	0.28	-0.3
1,282,329	+		GFF1254	0.28	-0.2
1,282,329	+		GFF1254	0.28	-0.7
1,282,333	-		GFF1254	0.28	-0.1
1,282,335	+		GFF1254	0.29	-2.4
1,282,343	-		GFF1254	0.29	+0.1
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