Strain Fitness in Sphingobium sp. HT1-2 around GFF1139

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,141,975	-				-0.2
1,141,975	-				+0.5
1,141,998	-				+0.5
1,142,015	+				-1.2
1,142,015	+				-0.5
1,142,023	-				-1.0
1,142,032	-				-1.1
1,142,032	-				-1.3
1,142,035	+				-0.9
1,142,035	+				-2.3
1,142,053	+				-0.9
1,142,083	-		GFF1138	0.12	-2.4
1,142,100	+		GFF1138	0.14	+1.4
1,142,118	+		GFF1138	0.16	-0.4
1,142,125	+		GFF1138	0.16	-0.6
1,142,130	+		GFF1138	0.17	+0.5
1,142,133	-		GFF1138	0.17	-1.8
1,142,133	-		GFF1138	0.17	+0.3
1,142,138	-		GFF1138	0.18	-0.3
1,142,138	-		GFF1138	0.18	-0.2
1,142,143	-		GFF1138	0.18	-1.9
1,142,143	-		GFF1138	0.18	-1.7
1,142,156	-		GFF1138	0.20	-0.5
1,142,157	+		GFF1138	0.20	+0.5
1,142,165	-		GFF1138	0.20	-1.6
1,142,166	+		GFF1138	0.21	+0.6
1,142,166	+		GFF1138	0.21	+0.2
1,142,171	+		GFF1138	0.21	-0.6
1,142,171	+		GFF1138	0.21	-2.4
1,142,179	-		GFF1138	0.22	-0.5
1,142,179	-		GFF1138	0.22	-1.3
1,142,179	-		GFF1138	0.22	+0.8
1,142,179	-		GFF1138	0.22	-0.1
1,142,203	+		GFF1138	0.24	+1.5
1,142,209	+		GFF1138	0.25	-0.5
1,142,211	-		GFF1138	0.25	-0.4
1,142,233	+		GFF1138	0.28	-0.7
1,142,233	+		GFF1138	0.28	-0.2
1,142,233	+		GFF1138	0.28	-0.1
1,142,233	+		GFF1138	0.28	-0.2
1,142,233	+		GFF1138	0.28	-1.9
1,142,233	+		GFF1138	0.28	-0.6
1,142,233	+		GFF1138	0.28	+0.2
1,142,233	+		GFF1138	0.28	-0.2
1,142,233	+		GFF1138	0.28	-2.2
1,142,233	+		GFF1138	0.28	+0.2
1,142,233	+		GFF1138	0.28	+0.7
1,142,233	+		GFF1138	0.28	+0.1
1,142,233	+		GFF1138	0.28	+0.7
1,142,233	+		GFF1138	0.28	+0.8
1,142,241	-		GFF1138	0.28	-0.0
1,142,241	-		GFF1138	0.28	-0.4
1,142,241	-		GFF1138	0.28	-0.6
1,142,241	-		GFF1138	0.28	-2.5
1,142,241	-		GFF1138	0.28	-1.5
1,142,250	+		GFF1138	0.29	-0.6
1,142,258	-		GFF1138	0.30	-1.2
1,142,260	+		GFF1138	0.30	-0.5
1,142,263	-		GFF1138	0.31	-1.9
1,142,271	+		GFF1138	0.31	-0.2
1,142,287	+		GFF1138	0.33	-0.4
1,142,290	+		GFF1138	0.33	-0.4
1,142,293	-		GFF1138	0.34	-0.6
1,142,295	-		GFF1138	0.34	-0.0
1,142,326	-		GFF1138	0.37	-0.0
1,142,327	-		GFF1138	0.37	+2.1
1,142,338	+		GFF1138	0.38	-1.9
1,142,341	-		GFF1138	0.39	+0.0
1,142,341	-		GFF1138	0.39	-2.3
1,142,346	+		GFF1138	0.39	-0.5
1,142,346	+		GFF1138	0.39	-2.0
1,142,346	-		GFF1138	0.39	-0.9
1,142,354	-		GFF1138	0.40	-0.1
1,142,354	-		GFF1138	0.40	-2.1
1,142,354	-		GFF1138	0.40	+1.1
1,142,354	-		GFF1138	0.40	+0.5
1,142,374	+		GFF1138	0.42	-0.0
1,142,379	+		GFF1138	0.43	-0.8
1,142,387	-		GFF1138	0.44	+0.0
1,142,414	+		GFF1138	0.46	-0.2
1,142,425	+		GFF1138	0.47	+0.2
1,142,430	+		GFF1138	0.48	+1.0
1,142,430	+		GFF1138	0.48	+0.6
1,142,438	-		GFF1138	0.49	-1.2
1,142,438	-		GFF1138	0.49	+0.4
1,142,438	-		GFF1138	0.49	-1.5
1,142,438	-		GFF1138	0.49	-1.5
1,142,438	-		GFF1138	0.49	-0.7
1,142,443	-		GFF1138	0.49	-0.3
1,142,464	-		GFF1138	0.52	-1.9
1,142,489	+		GFF1138	0.54	+0.8
1,142,495	-		GFF1138	0.55	-0.2
1,142,510	-		GFF1138	0.56	-1.6
1,142,518	+		GFF1138	0.57	-0.3
1,142,528	+		GFF1138	0.58	-0.0
1,142,528	+		GFF1138	0.58	-2.0
1,142,528	+		GFF1138	0.58	-0.9
1,142,528	+		GFF1138	0.58	-1.0
1,142,528	+		GFF1138	0.58	-1.2
1,142,534	-		GFF1138	0.59	+0.4
1,142,536	-		GFF1138	0.59	-1.7
1,142,536	-		GFF1138	0.59	-1.1
1,142,536	-		GFF1138	0.59	-0.3
1,142,565	-		GFF1138	0.62	-0.3
1,142,574	+		GFF1138	0.63	-2.0
1,142,591	+		GFF1138	0.65	+0.4
1,142,591	+		GFF1138	0.65	-0.6
1,142,591	+		GFF1138	0.65	-0.1
1,142,596	+		GFF1138	0.65	-1.1
1,142,596	+		GFF1138	0.65	+0.3
1,142,596	+		GFF1138	0.65	+0.8
1,142,599	-		GFF1138	0.66	-0.4
1,142,599	-		GFF1138	0.66	+0.6
1,142,646	+		GFF1138	0.70	-1.7
1,142,651	+		GFF1138	0.71	+0.5
1,142,654	-		GFF1138	0.71	-0.1
1,142,654	-		GFF1138	0.71	+0.6
1,142,654	-		GFF1138	0.71	+1.0
1,142,665	+		GFF1138	0.72	-0.8
1,142,666	+		GFF1138	0.72	-1.3
1,142,666	+		GFF1138	0.72	-0.5
1,142,666	+		GFF1138	0.72	-1.4
1,142,666	+		GFF1138	0.72	-2.8
1,142,666	+		GFF1138	0.72	+0.3
1,142,666	-		GFF1138	0.72	-1.4
1,142,673	+		GFF1138	0.73	-0.1
1,142,673	+		GFF1138	0.73	-0.3
1,142,673	+		GFF1138	0.73	+0.0
1,142,673	+		GFF1138	0.73	-1.2
1,142,673	+		GFF1138	0.73	-1.8
1,142,673	+		GFF1138	0.73	-2.2
1,142,673	-		GFF1138	0.73	-0.4
1,142,674	-		GFF1138	0.73	+0.2
1,142,674	-		GFF1138	0.73	-2.5
1,142,674	-		GFF1138	0.73	+0.7
1,142,681	-		GFF1138	0.74	-0.8
1,142,681	-		GFF1138	0.74	-0.9
1,142,681	-		GFF1138	0.74	+0.6
1,142,698	-		GFF1138	0.76	+1.2
1,142,722	-		GFF1138	0.78	-0.7
1,142,729	-		GFF1138	0.79	-0.6
1,142,729	-		GFF1138	0.79	+0.6
1,142,730	-		GFF1138	0.79	-1.6
1,142,742	-		GFF1138	0.80	-1.7
1,142,757	-		GFF1138	0.82	-2.9
1,142,780	+		GFF1138	0.84	-1.3
1,142,780	+		GFF1138	0.84	+0.6
1,142,785	+		GFF1138	0.85	-0.0
1,142,788	-		GFF1138	0.85	-0.5
1,142,793	+		GFF1138	0.86	-0.9
1,142,808	+		GFF1138	0.87	+0.3
1,142,808	+		GFF1138	0.87	-1.2
1,142,808	+		GFF1138	0.87	+1.1
1,142,811	-		GFF1138	0.88	+0.1
1,142,813	+		GFF1138	0.88	+0.1
1,142,813	+		GFF1138	0.88	+1.7
1,142,813	+		GFF1138	0.88	+0.6
1,142,816	-		GFF1138	0.88	+0.3
1,142,816	-		GFF1138	0.88	-0.0
1,142,818	+		GFF1138	0.88	-2.0
1,142,818	+		GFF1138	0.88	-1.0
1,142,818	+		GFF1138	0.88	-0.4
1,142,818	+		GFF1138	0.88	-0.9
1,142,818	+		GFF1138	0.88	+0.5
1,142,818	+		GFF1138	0.88	+0.3
1,142,818	+		GFF1138	0.88	-0.1
1,142,821	-		GFF1138	0.89	-0.6
1,142,821	-		GFF1138	0.89	-0.0
1,142,821	-		GFF1138	0.89	-1.2
1,142,823	+		GFF1138	0.89	+0.4
1,142,823	+		GFF1138	0.89	-1.0
1,142,823	+		GFF1138	0.89	-0.2
1,142,823	+		GFF1138	0.89	-0.1
1,142,823	+		GFF1138	0.89	-0.6
1,142,823	+		GFF1138	0.89	-0.7
1,142,823	+		GFF1138	0.89	-1.6
1,142,823	+		GFF1138	0.89	-0.2
1,142,823	+		GFF1138	0.89	-2.3
1,142,823	+		GFF1138	0.89	+0.2
1,142,823	+		GFF1138	0.89	+0.6
1,142,823	+		GFF1138	0.89	-0.2
1,142,823	+		GFF1138	0.89	-0.8
1,142,823	+		GFF1138	0.89	-0.9
1,142,823	+		GFF1138	0.89	-0.8
1,142,823	+		GFF1138	0.89	-0.2
1,142,823	+		GFF1138	0.89	+0.0
1,142,823	+		GFF1138	0.89	-0.1
1,142,823	+		GFF1138	0.89	-1.3
1,142,826	-		GFF1138	0.89	+0.0
1,142,826	-		GFF1138	0.89	-2.4
1,142,826	-		GFF1138	0.89	-0.7
1,142,826	-		GFF1138	0.89	+0.3
1,142,826	-		GFF1138	0.89	-0.7
1,142,831	-		GFF1138	0.90	+1.2
1,142,831	-		GFF1138	0.90	+0.2
1,142,831	-		GFF1138	0.90	+1.1
1,142,831	-		GFF1138	0.90	-1.6
1,142,831	-		GFF1138	0.90	-0.0
1,142,831	-		GFF1138	0.90	+0.3
1,142,831	-		GFF1138	0.90	+0.9
1,142,831	-		GFF1138	0.90	+0.4
1,142,831	-		GFF1138	0.90	-1.8
1,142,831	-		GFF1138	0.90	-1.1
1,142,831	-		GFF1138	0.90	+0.1
1,142,831	-		GFF1138	0.90	-1.1
1,142,831	-		GFF1138	0.90	-0.4
1,142,831	-		GFF1138	0.90	-0.6
1,142,831	-		GFF1138	0.90	-1.0
1,142,831	-		GFF1138	0.90	+0.2
1,142,831	-		GFF1138	0.90	-0.2
1,142,831	-		GFF1138	0.90	-1.2
1,142,831	-		GFF1138	0.90	-0.8
1,142,831	-		GFF1138	0.90	+1.2
1,142,850	+				+0.5
1,142,850	-				+0.6
1,142,880	+				+0.6
1,142,890	-				-0.3
1,142,900	-				-0.4
1,142,919	+				-0.1
1,142,919	+				+0.4
1,142,919	+				-0.4
1,142,919	+				-0.7
1,142,919	+				+0.3
1,142,919	+				-0.2
1,142,927	-				+0.0
1,142,927	-				+0.0
1,142,927	-				-0.2
1,142,927	-				-0.6
1,142,927	-				+0.5
1,142,927	-				-0.9
1,142,927	-				-1.0
1,142,927	-				-0.6
1,142,927	-				-0.5
1,142,927	-				-0.6
1,142,927	-				-1.2
1,142,929	-				+0.1
1,142,962	-				-0.4
1,142,970	-				-1.2
1,142,971	+				-1.6
1,142,975	+				+1.1
1,142,983	-				+0.5
1,142,990	-				+0.5
1,142,994	+				-0.4
1,143,002	-				+0.1
1,143,014	-				-2.5
1,143,029	+				+0.8
1,143,029	+				-1.4
1,143,029	+				-0.9
1,143,037	-				-1.0
1,143,078	+				-1.9
1,143,081	-				+0.2
1,143,086	-				+0.1
1,143,090	+				-0.3
1,143,095	+				-0.6
1,143,095	+				-0.9
1,143,095	+				-0.2
1,143,095	+				+0.4
1,143,095	+				-2.5
1,143,095	+				-1.2
1,143,095	+				-2.8
1,143,095	+				-0.3
1,143,095	+				-1.2
1,143,095	+				-1.0
1,143,095	+				-0.1
1,143,100	+				+0.4
1,143,103	-		GFF1139	0.10	-1.5
1,143,103	-		GFF1139	0.10	-1.8
1,143,103	-		GFF1139	0.10	-0.1
1,143,103	-		GFF1139	0.10	-0.7
1,143,103	-		GFF1139	0.10	-0.5
1,143,103	-		GFF1139	0.10	-0.7
1,143,103	-		GFF1139	0.10	-0.3
1,143,103	-		GFF1139	0.10	-0.4
1,143,105	+		GFF1139	0.10	+0.0
1,143,105	+		GFF1139	0.10	+2.0
1,143,105	+		GFF1139	0.10	-1.3
1,143,105	+		GFF1139	0.10	+0.0
1,143,105	+		GFF1139	0.10	-1.0
1,143,113	-		GFF1139	0.11	-0.6
1,143,115	+		GFF1139	0.11	-1.8
1,143,134	+		GFF1139	0.12	-1.9
1,143,153	+		GFF1139	0.13	+0.4
1,143,160	+		GFF1139	0.13	+0.1
1,143,161	-		GFF1139	0.13	+0.4
1,143,161	-		GFF1139	0.13	-1.5
1,143,165	+		GFF1139	0.14	+0.3
1,143,165	+		GFF1139	0.14	-0.2
1,143,166	-		GFF1139	0.14	+0.9
1,143,167	+		GFF1139	0.14	+1.3
1,143,173	-		GFF1139	0.14	-0.4
1,143,175	-		GFF1139	0.14	-0.4
1,143,175	-		GFF1139	0.14	+0.3
1,143,189	-		GFF1139	0.15	+0.4
1,143,227	-		GFF1139	0.17	+0.2
1,143,232	-		GFF1139	0.17	-0.2
1,143,232	-		GFF1139	0.17	-0.7
1,143,244	-		GFF1139	0.18	-1.0
1,143,254	+		GFF1139	0.19	+1.0
1,143,254	+		GFF1139	0.19	-0.1
1,143,259	+		GFF1139	0.19	-0.5
1,143,259	+		GFF1139	0.19	-1.2
1,143,259	+		GFF1139	0.19	+0.4
1,143,259	+		GFF1139	0.19	+1.5
1,143,259	+		GFF1139	0.19	-0.9
1,143,266	+		GFF1139	0.19	-0.1
1,143,286	-		GFF1139	0.21	-1.5
1,143,310	+		GFF1139	0.22	-0.8
1,143,314	+		GFF1139	0.22	-0.3
1,143,317	-		GFF1139	0.22	+1.2
1,143,317	-		GFF1139	0.22	-1.3
1,143,317	-		GFF1139	0.22	+1.1
1,143,321	+		GFF1139	0.23	-1.5
1,143,322	-		GFF1139	0.23	-0.9
1,143,322	-		GFF1139	0.23	+1.2
1,143,331	+		GFF1139	0.23	+0.3
1,143,333	+		GFF1139	0.23	-2.0
1,143,339	-		GFF1139	0.24	-1.3
1,143,339	-		GFF1139	0.24	+0.7
1,143,339	-		GFF1139	0.24	+0.2
1,143,339	-		GFF1139	0.24	-1.4
1,143,349	+		GFF1139	0.24	-0.0
1,143,370	-		GFF1139	0.25	-0.4
1,143,370	-		GFF1139	0.25	+1.0
1,143,372	-		GFF1139	0.25	+0.4
1,143,372	-		GFF1139	0.25	+0.7
1,143,372	-		GFF1139	0.25	-0.7
1,143,399	+		GFF1139	0.27	+1.1
1,143,407	-		GFF1139	0.27	-1.7
1,143,428	+		GFF1139	0.29	-1.7
1,143,429	-		GFF1139	0.29	-0.1
1,143,450	+		GFF1139	0.30	-1.9
1,143,454	-		GFF1139	0.30	+0.4
1,143,464	-		GFF1139	0.31	-2.2
1,143,487	+		GFF1139	0.32	+0.7
1,143,490	+		GFF1139	0.32	-0.3
1,143,494	-		GFF1139	0.32	-0.9
1,143,494	-		GFF1139	0.32	-0.2
1,143,494	-		GFF1139	0.32	-0.9
1,143,521	+		GFF1139	0.34	-1.3
1,143,599	+		GFF1139	0.38	-0.1
1,143,599	+		GFF1139	0.38	-1.9
1,143,599	+		GFF1139	0.38	-0.0
1,143,599	+		GFF1139	0.38	-1.2
1,143,599	+		GFF1139	0.38	-1.3
1,143,607	-		GFF1139	0.39	+0.6
1,143,630	+		GFF1139	0.40	+0.7
1,143,631	-		GFF1139	0.40	-1.8
1,143,658	+		GFF1139	0.42	+0.8
1,143,663	+		GFF1139	0.42	-2.2
1,143,666	-		GFF1139	0.42	-0.6
1,143,666	-		GFF1139	0.42	-0.3
1,143,666	-		GFF1139	0.42	+0.1
1,143,666	-		GFF1139	0.42	-1.4
1,143,668	+		GFF1139	0.42	+1.5
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1,144,452	+		GFF1139	0.87	-2.5
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1,144,548	-				+0.4
1,144,549	+				+0.3
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1,144,552	+				-1.2
1,144,595	-				-1.8
1,144,603	+				-2.0
1,144,603	+				-0.7
1,144,606	-				+0.7
1,144,611	-				+0.2
1,144,613	+				+0.0
1,144,613	+				-0.6
1,144,621	-				-0.4
1,144,626	-				-0.7
1,144,626	-				+0.5
1,144,636	+				-0.5
1,144,642	+				-0.3
1,144,660	-				-1.6
1,144,664	+				-0.4
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1,144,675	-				+1.0
1,144,675	-				-0.7
1,144,675	-				+0.5
1,144,675	-				-1.0
1,144,685	-				-0.6
1,144,705	-				+0.5
1,144,768	-				-2.9
1,144,788	-				-0.2
1,144,794	+				+1.2
1,144,809	+				+0.4
1,144,810	+				+0.3
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1,144,818	-				-1.9
1,144,818	-				-0.9
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