Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF110 and GFF111 are separated by 99 nucleotides GFF111 and GFF112 are separated by 168 nucleotides GFF112 and GFF113 overlap by 4 nucleotides
GFF110 - Glutamate racemase (EC 5.1.1.3), at 101,814 to 102,617
GFF110
GFF111 - Maltose O-acetyltransferase (EC 2.3.1.79), at 102,717 to 103,259
GFF111
GFF112 - Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY (EC 2.3.1.n3), at 103,428 to 104,042
GFF112
GFF113 - Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake, at 104,039 to 105,121
GFF113
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1 at 102.430 kb on - strand, within GFF110 at 102.432 kb on + strand, within GFF110 at 102.435 kb on + strand, within GFF110 at 102.440 kb on + strand, within GFF110 at 102.448 kb on - strand, within GFF110 at 102.459 kb on + strand, within GFF110 at 102.491 kb on + strand, within GFF110 at 102.491 kb on + strand, within GFF110 at 102.499 kb on - strand, within GFF110 at 102.499 kb on - strand, within GFF110 at 102.499 kb on - strand, within GFF110 at 102.503 kb on + strand, within GFF110 at 102.508 kb on + strand, within GFF110 at 102.508 kb on + strand, within GFF110 at 102.508 kb on + strand, within GFF110 at 102.508 kb on + strand, within GFF110 at 102.511 kb on - strand, within GFF110 at 102.513 kb on + strand, within GFF110 at 102.515 kb on + strand, within GFF110 at 102.516 kb on - strand, within GFF110 at 102.516 kb on - strand, within GFF110 at 102.516 kb on - strand, within GFF110 at 102.516 kb on - strand, within GFF110 at 102.516 kb on - strand, within GFF110 at 102.516 kb on - strand, within GFF110 at 102.516 kb on - strand, within GFF110 at 102.521 kb on - strand, within GFF110 at 102.521 kb on - strand, within GFF110 at 102.521 kb on - strand, within GFF110 at 102.523 kb on - strand, within GFF110 at 102.528 kb on + strand, within GFF110 at 102.553 kb on + strand at 102.558 kb on + strand at 102.561 kb on - strand at 102.590 kb on + strand at 102.598 kb on - strand at 102.598 kb on - strand at 102.604 kb on + strand at 102.607 kb on - strand at 102.610 kb on + strand at 102.626 kb on + strand at 102.628 kb on + strand at 102.647 kb on - strand at 102.647 kb on - strand at 102.662 kb on - strand at 102.700 kb on + strand at 102.700 kb on + strand at 102.705 kb on + strand at 102.708 kb on - strand at 102.708 kb on - strand at 102.710 kb on + strand at 102.710 kb on + strand at 102.713 kb on - strand at 102.713 kb on - strand at 102.713 kb on - strand at 102.715 kb on + strand at 102.715 kb on + strand at 102.718 kb on - strand at 102.720 kb on + strand at 102.720 kb on + strand at 102.720 kb on + strand at 102.720 kb on + strand at 102.720 kb on + strand at 102.720 kb on + strand at 102.720 kb on + strand at 102.725 kb on + strand at 102.725 kb on + strand at 102.728 kb on - strand at 102.728 kb on - strand at 102.728 kb on - strand at 102.728 kb on - strand at 102.728 kb on - strand at 102.728 kb on - strand at 102.728 kb on - strand at 102.733 kb on - strand at 102.738 kb on + strand at 102.753 kb on + strand at 102.761 kb on - strand at 102.761 kb on - strand at 102.775 kb on + strand, within GFF111 at 102.797 kb on + strand, within GFF111 at 102.809 kb on + strand, within GFF111 at 102.822 kb on - strand, within GFF111 at 102.855 kb on + strand, within GFF111 at 102.863 kb on - strand, within GFF111 at 102.884 kb on - strand, within GFF111 at 102.909 kb on + strand, within GFF111 at 102.909 kb on + strand, within GFF111 at 102.917 kb on - strand, within GFF111 at 102.946 kb on + strand, within GFF111 at 102.946 kb on - strand, within GFF111 at 102.952 kb on - strand, within GFF111 at 102.952 kb on - strand, within GFF111 at 102.954 kb on - strand, within GFF111 at 102.987 kb on - strand, within GFF111 at 103.000 kb on - strand, within GFF111 at 103.019 kb on + strand, within GFF111 at 103.019 kb on + strand, within GFF111 at 103.024 kb on + strand, within GFF111 at 103.037 kb on + strand, within GFF111 at 103.058 kb on - strand, within GFF111 at 103.063 kb on + strand, within GFF111 at 103.071 kb on - strand, within GFF111 at 103.086 kb on + strand, within GFF111 at 103.141 kb on + strand, within GFF111 at 103.141 kb on + strand, within GFF111 at 103.146 kb on + strand, within GFF111 at 103.149 kb on - strand, within GFF111 at 103.154 kb on - strand, within GFF111 at 103.176 kb on + strand, within GFF111 at 103.176 kb on + strand, within GFF111 at 103.181 kb on + strand, within GFF111 at 103.184 kb on - strand, within GFF111 at 103.184 kb on - strand, within GFF111 at 103.184 kb on - strand, within GFF111 at 103.185 kb on + strand, within GFF111 at 103.193 kb on - strand, within GFF111 at 103.195 kb on + strand, within GFF111 at 103.203 kb on - strand, within GFF111 at 103.207 kb on + strand at 103.220 kb on - strand at 103.222 kb on + strand at 103.222 kb on + strand at 103.230 kb on - strand at 103.230 kb on - strand at 103.230 kb on - strand at 103.235 kb on + strand at 103.259 kb on + strand at 103.293 kb on + strand at 103.312 kb on + strand at 103.312 kb on + strand at 103.312 kb on + strand at 103.312 kb on + strand at 103.312 kb on + strand at 103.312 kb on + strand at 103.312 kb on + strand at 103.312 kb on + strand at 103.312 kb on + strand at 103.343 kb on + strand at 103.343 kb on + strand at 103.343 kb on + strand at 103.343 kb on + strand at 103.356 kb on + strand at 103.385 kb on + strand at 104.009 kb on + strand at 104.014 kb on + strand at 104.046 kb on + strand at 104.055 kb on + strand at 104.056 kb on + strand at 104.056 kb on + strand at 104.062 kb on - strand at 104.064 kb on + strand at 104.072 kb on - strand at 104.072 kb on - strand at 104.074 kb on + strand at 104.074 kb on + strand at 104.074 kb on + strand at 104.074 kb on + strand at 104.082 kb on - strand at 104.084 kb on + strand at 104.084 kb on + strand at 104.097 kb on - strand at 104.114 kb on - strand at 104.123 kb on + strand at 104.125 kb on + strand at 104.125 kb on + strand at 104.131 kb on - strand at 104.131 kb on - strand at 104.133 kb on - strand at 104.141 kb on - strand at 104.163 kb on + strand, within GFF113 at 104.164 kb on - strand, within GFF113 at 104.164 kb on - strand, within GFF113 at 104.205 kb on - strand, within GFF113 at 104.236 kb on - strand, within GFF113 at 104.275 kb on + strand, within GFF113 at 104.280 kb on + strand, within GFF113 at 104.280 kb on + strand, within GFF113 at 104.283 kb on - strand, within GFF113 at 104.288 kb on - strand, within GFF113 at 104.288 kb on - strand, within GFF113 at 104.288 kb on - strand, within GFF113 at 104.288 kb on - strand, within GFF113 at 104.288 kb on - strand, within GFF113 at 104.288 kb on - strand, within GFF113 at 104.299 kb on + strand, within GFF113 at 104.299 kb on + strand, within GFF113 at 104.307 kb on - strand, within GFF113 at 104.307 kb on - strand, within GFF113 at 104.307 kb on - strand, within GFF113 at 104.307 kb on - strand, within GFF113 at 104.342 kb on - strand, within GFF113 at 104.356 kb on + strand, within GFF113 at 104.356 kb on + strand, within GFF113 at 104.356 kb on + strand, within GFF113 at 104.356 kb on + strand, within GFF113 at 104.359 kb on + strand, within GFF113 at 104.364 kb on - strand, within GFF113 at 104.364 kb on - strand, within GFF113 at 104.366 kb on + strand, within GFF113 at 104.416 kb on + strand, within GFF113 at 104.453 kb on + strand, within GFF113 at 104.460 kb on - strand, within GFF113 at 104.461 kb on - strand, within GFF113 at 104.465 kb on - strand, within GFF113 at 104.465 kb on - strand, within GFF113 at 104.478 kb on - strand, within GFF113 at 104.531 kb on - strand, within GFF113 at 104.583 kb on + strand, within GFF113 at 104.583 kb on + strand, within GFF113 at 104.583 kb on + strand, within GFF113 at 104.583 kb on + strand, within GFF113 at 104.591 kb on - strand, within GFF113 at 104.591 kb on - strand, within GFF113 at 104.598 kb on + strand, within GFF113 at 104.598 kb on + strand, within GFF113 at 104.602 kb on + strand, within GFF113 at 104.602 kb on + strand, within GFF113 at 104.625 kb on + strand, within GFF113 at 104.633 kb on - strand, within GFF113 at 104.633 kb on - strand, within GFF113 at 104.652 kb on - strand, within GFF113 at 104.676 kb on + strand, within GFF113 at 104.684 kb on - strand, within GFF113 at 104.686 kb on + strand, within GFF113 at 104.686 kb on + strand, within GFF113 at 104.686 kb on + strand, within GFF113 at 104.686 kb on + strand, within GFF113 at 104.691 kb on + strand, within GFF113 at 104.693 kb on + strand, within GFF113 at 104.694 kb on - strand, within GFF113 at 104.694 kb on - strand, within GFF113 at 104.701 kb on - strand, within GFF113 at 104.701 kb on - strand, within GFF113 at 104.733 kb on + strand, within GFF113 at 104.733 kb on + strand, within GFF113 at 104.733 kb on + strand, within GFF113 at 104.736 kb on - strand, within GFF113 at 104.740 kb on + strand, within GFF113 at 104.741 kb on - strand, within GFF113 at 104.741 kb on - strand, within GFF113 at 104.741 kb on - strand, within GFF113 at 104.741 kb on - strand, within GFF113 at 104.741 kb on - strand, within GFF113 at 104.741 kb on - strand, within GFF113 at 104.748 kb on - strand, within GFF113 at 104.764 kb on + strand, within GFF113 at 104.782 kb on - strand, within GFF113 at 104.806 kb on + strand, within GFF113 at 104.806 kb on + strand, within GFF113 at 104.806 kb on + strand, within GFF113 at 104.807 kb on + strand, within GFF113 at 104.814 kb on - strand, within GFF113 at 104.816 kb on + strand, within GFF113 at 104.816 kb on + strand, within GFF113 at 104.816 kb on + strand, within GFF113 at 104.824 kb on - strand, within GFF113 at 104.851 kb on - strand, within GFF113 at 104.852 kb on + strand, within GFF113 at 104.880 kb on + strand, within GFF113 at 104.880 kb on + strand, within GFF113 at 104.883 kb on - strand, within GFF113 at 104.888 kb on - strand, within GFF113 at 104.888 kb on - strand, within GFF113 at 104.888 kb on - strand, within GFF113 at 104.905 kb on + strand, within GFF113 at 104.910 kb on + strand, within GFF113 at 104.910 kb on + strand, within GFF113 at 104.913 kb on - strand, within GFF113 at 104.918 kb on - strand, within GFF113 at 104.941 kb on - strand, within GFF113 at 104.980 kb on + strand, within GFF113 at 104.980 kb on + strand, within GFF113 at 104.980 kb on + strand, within GFF113 at 104.980 kb on + strand, within GFF113 at 104.988 kb on - strand, within GFF113 at 105.010 kb on - strand, within GFF113 at 105.022 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 102,430 - GFF110 0.77 +1.0 102,432 + GFF110 0.77 +0.7 102,435 + GFF110 0.77 +1.1 102,440 + GFF110 0.78 +0.4 102,448 - GFF110 0.79 -0.8 102,459 + GFF110 0.80 -1.0 102,491 + GFF110 0.84 -1.5 102,491 + GFF110 0.84 +1.1 102,499 - GFF110 0.85 -0.4 102,499 - GFF110 0.85 -0.1 102,499 - GFF110 0.85 +0.4 102,503 + GFF110 0.86 -0.3 102,508 + GFF110 0.86 +0.8 102,508 + GFF110 0.86 +0.6 102,508 + GFF110 0.86 +0.3 102,508 + GFF110 0.86 +0.9 102,511 - GFF110 0.87 +0.2 102,513 + GFF110 0.87 -0.2 102,515 + GFF110 0.87 -0.9 102,516 - GFF110 0.87 -2.1 102,516 - GFF110 0.87 -1.1 102,516 - GFF110 0.87 -1.6 102,516 - GFF110 0.87 -1.7 102,516 - GFF110 0.87 -1.0 102,516 - GFF110 0.87 +1.7 102,516 - GFF110 0.87 +0.0 102,521 - GFF110 0.88 +0.0 102,521 - GFF110 0.88 +0.5 102,521 - GFF110 0.88 +0.1 102,523 - GFF110 0.88 -1.0 102,528 + GFF110 0.89 -1.8 102,553 + -0.6 102,558 + +0.6 102,561 - -0.3 102,590 + -1.1 102,598 - -1.3 102,598 - +0.8 102,604 + +0.9 102,607 - +0.7 102,610 + +0.1 102,626 + -1.1 102,628 + -2.1 102,647 - +0.7 102,647 - -1.0 102,662 - -0.6 102,700 + -0.4 102,700 + -1.9 102,705 + +0.3 102,708 - -0.7 102,708 - -0.7 102,710 + +1.1 102,710 + -1.3 102,713 - -1.0 102,713 - -1.4 102,713 - -0.5 102,715 + -0.4 102,715 + +0.5 102,718 - -0.4 102,720 + -0.1 102,720 + -1.7 102,720 + -1.8 102,720 + -0.4 102,720 + +0.1 102,720 + +0.9 102,720 + -1.9 102,725 + +1.1 102,725 + -0.5 102,728 - +0.2 102,728 - -0.3 102,728 - +0.9 102,728 - +0.7 102,728 - -1.2 102,728 - -0.4 102,728 - +0.1 102,733 - -0.6 102,738 + -0.3 102,753 + -1.4 102,761 - -0.8 102,761 - -2.0 102,775 + GFF111 0.11 -0.2 102,797 + GFF111 0.15 -1.3 102,809 + GFF111 0.17 +0.2 102,822 - GFF111 0.19 +0.6 102,855 + GFF111 0.25 -1.4 102,863 - GFF111 0.27 +0.5 102,884 - GFF111 0.31 -1.6 102,909 + GFF111 0.35 +1.1 102,909 + GFF111 0.35 +0.6 102,917 - GFF111 0.37 -0.7 102,946 + GFF111 0.42 +0.5 102,946 - GFF111 0.42 +0.2 102,952 - GFF111 0.43 -1.3 102,952 - GFF111 0.43 -0.3 102,954 - GFF111 0.44 -1.5 102,987 - GFF111 0.50 -1.5 103,000 - GFF111 0.52 -0.3 103,019 + GFF111 0.56 -0.3 103,019 + GFF111 0.56 -0.5 103,024 + GFF111 0.57 -0.3 103,037 + GFF111 0.59 +0.6 103,058 - GFF111 0.63 +0.2 103,063 + GFF111 0.64 -1.8 103,071 - GFF111 0.65 +0.0 103,086 + GFF111 0.68 -0.4 103,141 + GFF111 0.78 -0.1 103,141 + GFF111 0.78 -1.3 103,146 + GFF111 0.79 +0.9 103,149 - GFF111 0.80 +1.6 103,154 - GFF111 0.80 -0.2 103,176 + GFF111 0.85 -0.6 103,176 + GFF111 0.85 -1.4 103,181 + GFF111 0.85 -1.2 103,184 - GFF111 0.86 -1.8 103,184 - GFF111 0.86 +0.6 103,184 - GFF111 0.86 -0.0 103,185 + GFF111 0.86 +0.4 103,193 - GFF111 0.88 -0.1 103,195 + GFF111 0.88 -1.0 103,203 - GFF111 0.90 -0.5 103,207 + -0.7 103,220 - -0.1 103,222 + -0.1 103,222 + +0.5 103,230 - +0.4 103,230 - -0.3 103,230 - +0.3 103,235 + -1.6 103,259 + -0.7 103,293 + +0.8 103,312 + -0.9 103,312 + -0.3 103,312 + -0.8 103,312 + +1.0 103,312 + +0.2 103,312 + +1.3 103,312 + -0.3 103,312 + +0.3 103,312 + -0.3 103,343 + +0.8 103,343 + -2.3 103,343 + -1.8 103,343 + -1.4 103,356 + -0.9 103,385 + -1.1 104,009 + -1.7 104,014 + -1.2 104,046 + +0.2 104,055 + +0.9 104,056 + +0.6 104,056 + +0.1 104,062 - +1.0 104,064 + -0.5 104,072 - -1.8 104,072 - +0.8 104,074 + -1.2 104,074 + -1.6 104,074 + -1.4 104,074 + -0.5 104,082 - -0.9 104,084 + -0.3 104,084 + -1.5 104,097 - -1.1 104,114 - -1.8 104,123 + -0.6 104,125 + -1.3 104,125 + -0.3 104,131 - +0.5 104,131 - +0.2 104,133 - -0.5 104,141 - +0.6 104,163 + GFF113 0.11 +0.0 104,164 - GFF113 0.12 -0.6 104,164 - GFF113 0.12 -0.3 104,205 - GFF113 0.15 -0.9 104,236 - GFF113 0.18 -0.2 104,275 + GFF113 0.22 -0.8 104,280 + GFF113 0.22 +0.2 104,280 + GFF113 0.22 +0.7 104,283 - GFF113 0.23 +0.8 104,288 - GFF113 0.23 -1.6 104,288 - GFF113 0.23 -1.3 104,288 - GFF113 0.23 +0.4 104,288 - GFF113 0.23 -0.9 104,288 - GFF113 0.23 +1.2 104,288 - GFF113 0.23 -1.3 104,299 + GFF113 0.24 +0.9 104,299 + GFF113 0.24 +1.1 104,307 - GFF113 0.25 -0.3 104,307 - GFF113 0.25 +0.4 104,307 - GFF113 0.25 -0.8 104,307 - GFF113 0.25 -1.5 104,342 - GFF113 0.28 -1.9 104,356 + GFF113 0.29 -2.3 104,356 + GFF113 0.29 -1.3 104,356 + GFF113 0.29 -0.7 104,356 + GFF113 0.29 +0.6 104,359 + GFF113 0.30 -0.9 104,364 - GFF113 0.30 +1.5 104,364 - GFF113 0.30 -0.1 104,366 + GFF113 0.30 -1.8 104,416 + GFF113 0.35 -0.5 104,453 + GFF113 0.38 +0.8 104,460 - GFF113 0.39 -1.1 104,461 - GFF113 0.39 +1.2 104,465 - GFF113 0.39 +0.7 104,465 - GFF113 0.39 +1.1 104,478 - GFF113 0.41 -2.2 104,531 - GFF113 0.45 +0.7 104,583 + GFF113 0.50 -0.6 104,583 + GFF113 0.50 -1.8 104,583 + GFF113 0.50 -0.4 104,583 + GFF113 0.50 +0.5 104,591 - GFF113 0.51 +0.2 104,591 - GFF113 0.51 -0.3 104,598 + GFF113 0.52 -2.0 104,598 + GFF113 0.52 +0.2 104,602 + GFF113 0.52 -1.5 104,602 + GFF113 0.52 -1.4 104,625 + GFF113 0.54 -1.7 104,633 - GFF113 0.55 +0.3 104,633 - GFF113 0.55 -1.3 104,652 - GFF113 0.57 -2.0 104,676 + GFF113 0.59 -2.4 104,684 - GFF113 0.60 +0.6 104,686 + GFF113 0.60 +0.1 104,686 + GFF113 0.60 -0.0 104,686 + GFF113 0.60 -1.9 104,686 + GFF113 0.60 -0.0 104,691 + GFF113 0.60 +0.3 104,693 + GFF113 0.60 -0.2 104,694 - GFF113 0.60 +1.0 104,694 - GFF113 0.60 +0.1 104,701 - GFF113 0.61 -0.1 104,701 - GFF113 0.61 -1.6 104,733 + GFF113 0.64 +0.0 104,733 + GFF113 0.64 +0.2 104,733 + GFF113 0.64 +1.3 104,736 - GFF113 0.64 +0.6 104,740 + GFF113 0.65 -0.4 104,741 - GFF113 0.65 -0.8 104,741 - GFF113 0.65 -0.2 104,741 - GFF113 0.65 -0.4 104,741 - GFF113 0.65 +0.2 104,741 - GFF113 0.65 -0.3 104,741 - GFF113 0.65 +0.1 104,748 - GFF113 0.65 -0.7 104,764 + GFF113 0.67 -1.3 104,782 - GFF113 0.69 +1.0 104,806 + GFF113 0.71 -0.5 104,806 + GFF113 0.71 -1.8 104,806 + GFF113 0.71 -1.6 104,807 + GFF113 0.71 +0.0 104,814 - GFF113 0.72 -0.2 104,816 + GFF113 0.72 +0.7 104,816 + GFF113 0.72 -1.3 104,816 + GFF113 0.72 +0.6 104,824 - GFF113 0.72 -2.0 104,851 - GFF113 0.75 +0.4 104,852 + GFF113 0.75 +0.2 104,880 + GFF113 0.78 +1.1 104,880 + GFF113 0.78 +0.2 104,883 - GFF113 0.78 +0.5 104,888 - GFF113 0.78 +0.4 104,888 - GFF113 0.78 -1.9 104,888 - GFF113 0.78 -1.2 104,905 + GFF113 0.80 +0.7 104,910 + GFF113 0.80 +0.1 104,910 + GFF113 0.80 +1.4 104,913 - GFF113 0.81 +0.2 104,918 - GFF113 0.81 -2.1 104,941 - GFF113 0.83 -0.8 104,980 + GFF113 0.87 -0.2 104,980 + GFF113 0.87 +1.1 104,980 + GFF113 0.87 +1.0 104,980 + GFF113 0.87 -0.1 104,988 - GFF113 0.88 -0.2 105,010 - GFF113 0.90 -1.1 105,022 + -2.3
Or see this region's nucleotide sequence