Strain Fitness in Sphingobium sp. HT1-2 around GFF1109

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,109,750	+		GFF1107	0.32	-0.7
1,109,750	+		GFF1107	0.32	+1.3
1,109,750	+		GFF1107	0.32	-0.2
1,109,750	+		GFF1107	0.32	+0.1
1,109,750	+		GFF1107	0.32	-0.4
1,109,750	+		GFF1107	0.32	-0.0
1,109,750	+		GFF1107	0.32	-0.4
1,109,751	+		GFF1107	0.32	-0.3
1,109,758	-		GFF1107	0.34	-0.4
1,109,758	-		GFF1107	0.34	+0.6
1,109,758	-		GFF1107	0.34	-0.0
1,109,758	-		GFF1107	0.34	-1.9
1,109,758	-		GFF1107	0.34	-0.0
1,109,758	-		GFF1107	0.34	+0.7
1,109,758	-		GFF1107	0.34	-1.0
1,109,759	-		GFF1107	0.34	+1.3
1,109,761	+		GFF1107	0.34	+0.1
1,109,761	+		GFF1107	0.34	+0.3
1,109,768	+		GFF1107	0.36	-0.4
1,109,769	-		GFF1107	0.36	+0.8
1,109,769	-		GFF1107	0.36	+0.3
1,109,774	-		GFF1107	0.37	+0.1
1,109,788	+		GFF1107	0.40	+0.1
1,109,788	+		GFF1107	0.40	+1.0
1,109,796	-		GFF1107	0.42	+0.8
1,109,796	-		GFF1107	0.42	+0.9
1,109,796	-		GFF1107	0.42	+0.3
1,109,803	+		GFF1107	0.44	-1.6
1,109,813	+		GFF1107	0.46	-1.9
1,109,818	+		GFF1107	0.47	-1.1
1,109,818	+		GFF1107	0.47	-0.7
1,109,826	-		GFF1107	0.49	+1.0
1,109,826	-		GFF1107	0.49	-0.3
1,109,826	-		GFF1107	0.49	+0.1
1,109,826	-		GFF1107	0.49	-0.1
1,109,849	+		GFF1107	0.54	-0.5
1,109,863	-		GFF1107	0.57	-0.5
1,109,863	-		GFF1107	0.57	+0.8
1,109,864	-		GFF1107	0.57	-0.5
1,109,864	-		GFF1107	0.57	+0.7
1,109,895	+		GFF1107	0.64	-0.1
1,109,900	+		GFF1107	0.65	+1.0
1,109,905	+		GFF1107	0.66	-1.1
1,109,905	+		GFF1107	0.66	-1.5
1,109,908	-		GFF1107	0.67	+0.3
1,109,908	-		GFF1107	0.67	-0.1
1,109,908	-		GFF1107	0.67	-1.1
1,109,908	-		GFF1107	0.67	-1.5
1,109,910	+		GFF1107	0.67	-0.3
1,109,913	-		GFF1107	0.68	+1.2
1,109,913	-		GFF1107	0.68	-0.6
1,109,914	-		GFF1107	0.68	+0.7
1,109,951	-		GFF1107	0.76	-1.1
1,109,956	-		GFF1107	0.77	-0.9
1,109,959	+		GFF1107	0.78	-0.9
1,109,965	+		GFF1107	0.79	-0.7
1,109,965	+		GFF1107	0.79	-1.1
1,109,965	+		GFF1107	0.79	-0.3
1,109,967	-		GFF1107	0.80	-1.0
1,109,973	-		GFF1107	0.81	+0.7
1,109,973	-		GFF1107	0.81	-0.3
1,109,973	-		GFF1107	0.81	-1.6
1,109,973	-		GFF1107	0.81	+0.3
1,109,973	-		GFF1107	0.81	+0.4
1,109,973	-		GFF1107	0.81	-1.6
1,109,973	-		GFF1107	0.81	-1.7
1,109,982	+		GFF1107	0.83	-1.9
1,109,996	+		GFF1107	0.86	+0.3
1,109,999	-		GFF1107	0.87	+0.6
1,110,013	+		GFF1107	0.90	-1.4
1,110,022	+				+0.9
1,110,031	+				-1.5
1,110,054	+				+0.2
1,110,054	+				-0.9
1,110,054	+				-0.5
1,110,054	+				-0.9
1,110,059	+				+0.5
1,110,060	-				-1.5
1,110,062	-				-0.9
1,110,062	-				+0.7
1,110,062	-				+0.5
1,110,064	+				+0.5
1,110,064	+				-1.2
1,110,072	-				-0.3
1,110,072	-				+1.3
1,110,072	-				-1.6
1,110,072	-				+1.1
1,110,072	-				-1.4
1,110,072	-				+0.6
1,110,072	-				+1.3
1,110,135	+				+0.1
1,110,201	-				-1.9
1,110,201	-				+1.0
1,110,214	+				-0.1
1,110,214	+				-1.7
1,110,222	-				-1.4
1,110,222	-				-2.1
1,110,239	+				+0.2
1,110,244	+				+0.2
1,110,244	+				-0.3
1,110,249	+				-0.1
1,110,249	+				-1.8
1,110,249	+				+0.1
1,110,249	+				-0.1
1,110,249	+				-0.0
1,110,249	+				+0.3
1,110,249	+				-2.2
1,110,252	-				+0.8
1,110,254	+				-0.1
1,110,254	+				+0.7
1,110,254	+				-1.2
1,110,254	+				-1.6
1,110,254	+				+0.2
1,110,254	+				+0.3
1,110,254	+				-2.2
1,110,254	+				-2.9
1,110,254	+				-0.1
1,110,254	+				-1.4
1,110,254	+				-0.2
1,110,254	+				-0.9
1,110,254	+				+0.4
1,110,254	+				-1.1
1,110,257	-				-1.6
1,110,257	-				-1.8
1,110,257	-				+0.9
1,110,259	+				+0.2
1,110,262	-				+0.5
1,110,262	-				-0.8
1,110,262	-				+1.0
1,110,262	-				-2.8
1,110,272	-				-0.1
1,110,272	-				+0.1
1,110,272	-				+0.3
1,110,272	-				-1.8
1,110,272	-				-0.6
1,110,291	-		GFF1108	0.10	-0.1
1,110,297	-		GFF1108	0.12	-1.1
1,110,307	+		GFF1108	0.14	-0.9
1,110,319	+		GFF1108	0.16	-1.0
1,110,322	-		GFF1108	0.17	-0.7
1,110,327	+		GFF1108	0.18	-0.1
1,110,329	+		GFF1108	0.18	-1.8
1,110,335	-		GFF1108	0.20	-0.2
1,110,337	-		GFF1108	0.20	+0.3
1,110,340	+		GFF1108	0.21	-0.6
1,110,345	-		GFF1108	0.22	-0.7
1,110,346	+		GFF1108	0.22	-0.6
1,110,347	+		GFF1108	0.22	+0.7
1,110,347	+		GFF1108	0.22	+1.1
1,110,352	+		GFF1108	0.23	-0.4
1,110,352	+		GFF1108	0.23	-0.4
1,110,352	+		GFF1108	0.23	-0.8
1,110,352	+		GFF1108	0.23	-0.6
1,110,355	-		GFF1108	0.24	+1.2
1,110,355	-		GFF1108	0.24	+0.5
1,110,357	+		GFF1108	0.24	-1.4
1,110,360	-		GFF1108	0.25	-2.3
1,110,360	-		GFF1108	0.25	-0.3
1,110,360	-		GFF1108	0.25	-0.5
1,110,360	-		GFF1108	0.25	-1.5
1,110,367	-		GFF1108	0.26	+1.9
1,110,374	-		GFF1108	0.28	+0.5
1,110,380	+		GFF1108	0.29	+0.2
1,110,380	+		GFF1108	0.29	-1.7
1,110,380	+		GFF1108	0.29	-0.3
1,110,380	+		GFF1108	0.29	+0.7
1,110,387	+		GFF1108	0.31	-0.2
1,110,388	-		GFF1108	0.31	-0.7
1,110,388	-		GFF1108	0.31	-2.8
1,110,388	-		GFF1108	0.31	+0.9
1,110,388	-		GFF1108	0.31	-0.3
1,110,388	-		GFF1108	0.31	+0.4
1,110,394	+		GFF1108	0.32	+0.6
1,110,394	+		GFF1108	0.32	+0.8
1,110,394	+		GFF1108	0.32	-1.5
1,110,394	+		GFF1108	0.32	-2.3
1,110,394	+		GFF1108	0.32	+0.5
1,110,394	+		GFF1108	0.32	-0.4
1,110,395	-		GFF1108	0.32	+0.5
1,110,395	-		GFF1108	0.32	-1.3
1,110,396	-		GFF1108	0.32	-2.4
1,110,397	-		GFF1108	0.33	-0.5
1,110,399	+		GFF1108	0.33	-0.1
1,110,399	+		GFF1108	0.33	+0.2
1,110,399	+		GFF1108	0.33	+0.1
1,110,399	+		GFF1108	0.33	-1.8
1,110,402	-		GFF1108	0.34	+0.1
1,110,403	+		GFF1108	0.34	+1.2
1,110,403	+		GFF1108	0.34	+0.2
1,110,407	-		GFF1108	0.35	-1.1
1,110,407	-		GFF1108	0.35	+0.2
1,110,407	-		GFF1108	0.35	-0.5
1,110,411	-		GFF1108	0.36	-1.1
1,110,411	-		GFF1108	0.36	-0.7
1,110,412	-		GFF1108	0.36	-0.7
1,110,416	-		GFF1108	0.37	-1.2
1,110,417	-		GFF1108	0.37	+0.6
1,110,417	-		GFF1108	0.37	-2.7
1,110,421	-		GFF1108	0.38	+0.1
1,110,429	-		GFF1108	0.39	-1.8
1,110,431	-		GFF1108	0.40	+0.9
1,110,433	+		GFF1108	0.40	+0.1
1,110,442	-		GFF1108	0.42	+0.3
1,110,454	+		GFF1108	0.45	+0.9
1,110,454	+		GFF1108	0.45	-1.3
1,110,467	+		GFF1108	0.47	-1.1
1,110,467	+		GFF1108	0.47	-1.0
1,110,472	+		GFF1108	0.48	+0.3
1,110,472	+		GFF1108	0.48	+0.6
1,110,472	+		GFF1108	0.48	-1.2
1,110,472	+		GFF1108	0.48	-1.7
1,110,475	-		GFF1108	0.49	-0.2
1,110,477	+		GFF1108	0.49	+1.0
1,110,477	+		GFF1108	0.49	-1.6
1,110,480	-		GFF1108	0.50	+1.0
1,110,480	-		GFF1108	0.50	-0.5
1,110,480	-		GFF1108	0.50	-0.6
1,110,485	-		GFF1108	0.51	-1.5
1,110,487	+		GFF1108	0.52	-0.7
1,110,499	+		GFF1108	0.54	+0.4
1,110,499	+		GFF1108	0.54	-0.7
1,110,499	+		GFF1108	0.54	-0.9
1,110,504	+		GFF1108	0.55	-0.1
1,110,507	-		GFF1108	0.56	+0.7
1,110,509	+		GFF1108	0.56	-0.9
1,110,509	+		GFF1108	0.56	+0.9
1,110,509	+		GFF1108	0.56	+0.5
1,110,509	+		GFF1108	0.56	-0.6
1,110,512	-		GFF1108	0.57	-0.1
1,110,512	-		GFF1108	0.57	+0.3
1,110,512	-		GFF1108	0.57	+0.8
1,110,512	-		GFF1108	0.57	+0.2
1,110,512	-		GFF1108	0.57	+0.1
1,110,517	-		GFF1108	0.58	+0.4
1,110,517	-		GFF1108	0.58	-1.7
1,110,519	-		GFF1108	0.58	+0.4
1,110,525	+		GFF1108	0.60	-1.1
1,110,536	+		GFF1108	0.62	-2.5
1,110,536	+		GFF1108	0.62	+0.5
1,110,536	+		GFF1108	0.62	+0.4
1,110,551	+		GFF1108	0.65	+0.4
1,110,557	+		GFF1108	0.66	-1.8
1,110,564	-		GFF1108	0.68	-0.7
1,110,572	+		GFF1108	0.69	+1.2
1,110,574	+		GFF1108	0.70	+0.5
1,110,583	+		GFF1108	0.72	-0.4
1,110,585	+		GFF1108	0.72	+0.4
1,110,585	+		GFF1108	0.72	+0.0
1,110,588	-		GFF1108	0.73	+0.5
1,110,593	-		GFF1108	0.74	-1.7
1,110,593	-		GFF1108	0.74	+0.5
1,110,593	-		GFF1108	0.74	+1.0
1,110,593	-		GFF1108	0.74	+0.7
1,110,593	-		GFF1108	0.74	+0.1
1,110,595	-		GFF1108	0.74	+2.0
1,110,622	+		GFF1108	0.80	+0.2
1,110,622	+		GFF1108	0.80	-1.6
1,110,628	+		GFF1108	0.81	+0.4
1,110,637	-		GFF1108	0.83	-0.7
1,110,648	+		GFF1108	0.85	+0.6
1,110,652	+		GFF1108	0.86	-0.4
1,110,652	+		GFF1108	0.86	+0.7
1,110,652	-		GFF1108	0.86	+0.6
1,110,658	+		GFF1108	0.87	+0.8
1,110,658	+		GFF1108	0.87	-2.2
1,110,658	+		GFF1108	0.87	+0.6
1,110,658	+		GFF1108	0.87	+0.1
1,110,658	+		GFF1108	0.87	-1.8
1,110,664	+		GFF1108	0.89	-0.9
1,110,664	+		GFF1108	0.89	+1.3
1,110,664	+		GFF1108	0.89	-0.0
1,110,664	+		GFF1108	0.89	+1.7
1,110,664	+		GFF1108	0.89	+1.1
1,110,664	+		GFF1108	0.89	-1.3
1,110,664	+		GFF1108	0.89	-0.7
1,110,664	+		GFF1108	0.89	-2.5
1,110,664	+		GFF1108	0.89	-1.1
1,110,664	+		GFF1108	0.89	-1.3
1,110,666	-		GFF1108	0.89	+0.2
1,110,666	-		GFF1108	0.89	-0.3
1,110,666	-		GFF1108	0.89	-0.3
1,110,672	-				-1.0
1,110,672	-				+0.9
1,110,672	-				-0.4
1,110,672	-				-0.4
1,110,672	-				-0.6
1,110,672	-				-0.1
1,110,677	-				+0.4
1,110,678	+				+0.4
1,110,687	+				-0.1
1,110,695	-				-0.6
1,110,702	-				-1.1
1,110,711	+				-0.6
1,110,719	-				-0.3
1,110,726	-				+0.1
1,110,726	-				-0.4
1,110,726	-				-0.6
1,110,726	-				-0.4
1,110,726	-				-1.3
1,110,726	-				+0.2
1,110,726	-				-1.3
1,110,726	-				-0.1
1,110,726	-				-0.8
1,110,726	-				-1.1
1,110,726	-				-0.3
1,110,726	-				-2.5
1,110,726	-				+0.3
1,110,726	-				-1.8
1,110,726	-				-0.1
1,110,726	-				+0.7
1,110,726	-				+0.9
1,110,726	-				-1.9
1,110,734	-				-0.3
1,110,745	-		GFF1109	0.15	-0.2
1,110,753	-		GFF1109	0.22	+0.1
1,111,018	+				-2.1
1,111,072	-				-2.1
1,111,158	-				-1.6
1,111,347	-				+1.0
1,111,380	+				-0.7
1,111,439	+				-0.3
1,111,475	-				-1.8
1,111,475	-				-0.5
1,111,519	+				+0.7
1,111,527	-				+0.1
1,111,546	-				-0.3
1,111,546	-				+0.3
1,111,561	-				+0.5
1,111,561	-				-0.5
1,111,562	+				-0.6
1,111,562	+				+0.5
1,111,570	-				+0.5
1,111,579	+				-1.0
1,111,595	-				-0.9
1,111,633	-				+1.6
1,111,635	-				-1.8
1,111,650	-				+0.2
1,111,652	-				-0.5
1,111,666	+				-2.1
1,111,672	+				-1.1
1,111,674	-				-1.0
1,111,675	+				-0.5
1,111,695	+				+0.6
1,111,703	-				+0.1
1,111,704	+				-1.0
1,111,736	+				-1.8
1,111,736	+				+1.1
1,111,744	-				-0.4
1,111,744	-				-1.5
1,111,751	+				-0.3
1,111,759	-				-0.2
1,111,771	+				+0.1
1,111,779	+				-1.3
1,111,779	+				-0.0
1,111,779	+				-1.8
1,111,779	+				+0.7
1,111,779	+				-0.5
1,111,779	+				-0.2
1,111,779	+				-1.6
1,111,779	+				+0.2
1,111,787	-				-0.9
1,111,787	-				+0.1
1,111,787	-				-0.3
1,111,787	-				+0.8
1,111,789	+				-0.0
1,111,792	+				-1.6
1,111,794	-				-1.7
1,111,818	+				+1.0
1,111,818	+				-0.4
1,111,818	+				-0.5
1,111,818	+				-0.3
1,111,818	+				-2.4
1,111,818	+				-0.3
1,111,818	+				-0.8
1,111,818	+				+1.6
1,111,818	+				-0.3
1,111,818	+				-0.7
1,111,826	-				+2.3
1,111,826	-				+1.3
1,111,826	-				-0.0
1,111,826	-				+0.3
1,111,826	-				-0.2
1,111,826	-				+0.5
1,111,826	-				-0.6
1,111,826	-				-0.3
1,111,826	-				-0.0
1,111,826	-				+0.3