Strain Fitness in Sphingobium sp. HT1-2 around GFF100

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF99 and GFF100 are separated by 164 nucleotidesGFF100 and GFF101 are separated by 260 nucleotides GFF99 - 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190), at 88,747 to 89,952 GFF99 GFF100 - Pyridoxal 5-phosphate (PLP)-dependent ornithine decarboxylase (EC 4.1.1.17), at 90,117 to 91,310 GFF100 GFF101 - Carboxynorspermidine decarboxylase (EC 4.1.1.96), at 91,571 to 92,743 GFF101 Position (kb) 90 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 89.118 kb on + strand, within GFF99at 89.118 kb on + strand, within GFF99at 89.118 kb on + strand, within GFF99at 89.121 kb on - strand, within GFF99at 89.123 kb on + strand, within GFF99at 89.123 kb on + strand, within GFF99at 89.123 kb on + strand, within GFF99at 89.123 kb on + strand, within GFF99at 89.123 kb on + strand, within GFF99at 89.123 kb on + strand, within GFF99at 89.126 kb on - strand, within GFF99at 89.126 kb on - strand, within GFF99at 89.126 kb on - strand, within GFF99at 89.126 kb on - strand, within GFF99at 89.126 kb on - strand, within GFF99at 89.128 kb on + strand, within GFF99at 89.131 kb on - strand, within GFF99at 89.131 kb on - strand, within GFF99at 89.131 kb on - strand, within GFF99at 89.131 kb on - strand, within GFF99at 89.131 kb on - strand, within GFF99at 89.189 kb on - strand, within GFF99at 89.189 kb on - strand, within GFF99at 89.190 kb on + strand, within GFF99at 89.200 kb on + strand, within GFF99at 89.203 kb on + strand, within GFF99at 89.211 kb on - strand, within GFF99at 89.272 kb on - strand, within GFF99at 89.272 kb on - strand, within GFF99at 89.277 kb on + strand, within GFF99at 89.292 kb on + strand, within GFF99at 89.322 kb on + strand, within GFF99at 89.338 kb on + strand, within GFF99at 89.338 kb on + strand, within GFF99at 89.370 kb on + strand, within GFF99at 89.370 kb on + strand, within GFF99at 89.370 kb on + strand, within GFF99at 89.370 kb on + strand, within GFF99at 89.370 kb on + strand, within GFF99at 89.370 kb on + strand, within GFF99at 89.378 kb on + strand, within GFF99at 89.378 kb on + strand, within GFF99at 89.378 kb on - strand, within GFF99at 89.378 kb on - strand, within GFF99at 89.378 kb on - strand, within GFF99at 89.378 kb on - strand, within GFF99at 89.378 kb on - strand, within GFF99at 89.378 kb on - strand, within GFF99at 89.378 kb on - strand, within GFF99at 89.378 kb on - strand, within GFF99at 89.386 kb on - strand, within GFF99at 89.386 kb on - strand, within GFF99at 89.386 kb on - strand, within GFF99at 89.395 kb on + strand, within GFF99at 89.403 kb on + strand, within GFF99at 89.438 kb on + strand, within GFF99at 89.453 kb on - strand, within GFF99at 89.471 kb on - strand, within GFF99at 89.480 kb on + strand, within GFF99at 89.485 kb on + strand, within GFF99at 89.485 kb on + strand, within GFF99at 89.490 kb on + strand, within GFF99at 89.490 kb on + strand, within GFF99at 89.490 kb on + strand, within GFF99at 89.490 kb on + strand, within GFF99at 89.490 kb on + strand, within GFF99at 89.490 kb on + strand, within GFF99at 89.495 kb on + strand, within GFF99at 89.498 kb on - strand, within GFF99at 89.498 kb on - strand, within GFF99at 89.498 kb on - strand, within GFF99at 89.498 kb on - strand, within GFF99at 89.508 kb on - strand, within GFF99at 89.508 kb on - strand, within GFF99at 89.508 kb on - strand, within GFF99at 89.522 kb on - strand, within GFF99at 89.538 kb on - strand, within GFF99at 89.539 kb on - strand, within GFF99at 89.541 kb on + strand, within GFF99at 89.541 kb on + strand, within GFF99at 89.558 kb on + strand, within GFF99at 89.558 kb on + strand, within GFF99at 89.558 kb on + strand, within GFF99at 89.559 kb on - strand, within GFF99at 89.566 kb on - strand, within GFF99at 89.576 kb on + strand, within GFF99at 89.576 kb on + strand, within GFF99at 89.594 kb on + strand, within GFF99at 89.594 kb on + strand, within GFF99at 89.602 kb on - strand, within GFF99at 89.615 kb on + strand, within GFF99at 89.623 kb on - strand, within GFF99at 89.710 kb on + strand, within GFF99at 89.710 kb on + strand, within GFF99at 89.731 kb on + strand, within GFF99at 89.750 kb on + strand, within GFF99at 89.750 kb on + strand, within GFF99at 89.758 kb on - strand, within GFF99at 89.777 kb on + strand, within GFF99at 89.795 kb on - strand, within GFF99at 89.795 kb on - strand, within GFF99at 89.802 kb on - strand, within GFF99at 89.820 kb on - strand, within GFF99at 89.829 kb on - strand, within GFF99at 89.859 kb on - strandat 89.861 kb on - strandat 89.872 kb on + strandat 89.872 kb on + strandat 89.872 kb on + strandat 89.872 kb on + strandat 89.880 kb on - strandat 89.880 kb on - strandat 89.891 kb on - strandat 89.909 kb on + strandat 89.909 kb on + strandat 89.909 kb on + strandat 89.917 kb on - strandat 89.917 kb on - strandat 89.918 kb on + strandat 89.926 kb on - strandat 89.968 kb on + strandat 89.968 kb on + strandat 89.968 kb on + strandat 89.968 kb on + strandat 89.975 kb on + strandat 89.975 kb on - strandat 89.976 kb on - strandat 89.976 kb on - strandat 89.977 kb on + strandat 89.977 kb on + strandat 89.977 kb on + strandat 89.977 kb on + strandat 89.977 kb on + strandat 89.985 kb on - strandat 89.985 kb on - strandat 89.985 kb on - strandat 89.985 kb on - strandat 89.985 kb on - strandat 90.045 kb on - strandat 90.045 kb on - strandat 90.046 kb on - strandat 90.049 kb on - strandat 90.066 kb on - strandat 90.083 kb on - strandat 90.092 kb on + strandat 90.094 kb on + strandat 90.100 kb on + strandat 90.100 kb on - strandat 90.101 kb on - strandat 90.113 kb on + strandat 90.123 kb on - strandat 91.334 kb on - strandat 91.334 kb on - strandat 91.365 kb on - strandat 91.408 kb on - strandat 91.410 kb on + strandat 91.413 kb on - strandat 91.463 kb on + strandat 91.490 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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89,118 + GFF99 0.31 -2.0
89,118 + GFF99 0.31 -2.5
89,118 + GFF99 0.31 +1.1
89,121 - GFF99 0.31 -0.5
89,123 + GFF99 0.31 -0.3
89,123 + GFF99 0.31 -1.0
89,123 + GFF99 0.31 +0.9
89,123 + GFF99 0.31 -0.4
89,123 + GFF99 0.31 -1.3
89,123 + GFF99 0.31 -1.6
89,126 - GFF99 0.31 -0.3
89,126 - GFF99 0.31 -0.2
89,126 - GFF99 0.31 +0.4
89,126 - GFF99 0.31 -1.5
89,126 - GFF99 0.31 -0.7
89,128 + GFF99 0.32 +0.1
89,131 - GFF99 0.32 +0.9
89,131 - GFF99 0.32 -0.1
89,131 - GFF99 0.32 -1.0
89,131 - GFF99 0.32 +0.3
89,131 - GFF99 0.32 -1.3
89,189 - GFF99 0.37 +1.2
89,189 - GFF99 0.37 -1.2
89,190 + GFF99 0.37 -0.6
89,200 + GFF99 0.38 -0.8
89,203 + GFF99 0.38 -1.7
89,211 - GFF99 0.38 -0.4
89,272 - GFF99 0.44 -1.3
89,272 - GFF99 0.44 +0.7
89,277 + GFF99 0.44 -0.4
89,292 + GFF99 0.45 -0.5
89,322 + GFF99 0.48 -0.1
89,338 + GFF99 0.49 -0.1
89,338 + GFF99 0.49 -0.4
89,370 + GFF99 0.52 +1.9
89,370 + GFF99 0.52 +1.2
89,370 + GFF99 0.52 -2.2
89,370 + GFF99 0.52 +0.7
89,370 + GFF99 0.52 -0.6
89,370 + GFF99 0.52 -2.4
89,378 + GFF99 0.52 +0.9
89,378 + GFF99 0.52 -2.0
89,378 - GFF99 0.52 -0.4
89,378 - GFF99 0.52 +0.9
89,378 - GFF99 0.52 -1.3
89,378 - GFF99 0.52 -1.3
89,378 - GFF99 0.52 -0.5
89,378 - GFF99 0.52 +0.1
89,378 - GFF99 0.52 +0.6
89,378 - GFF99 0.52 -2.8
89,386 - GFF99 0.53 +1.2
89,386 - GFF99 0.53 -1.0
89,386 - GFF99 0.53 +0.1
89,395 + GFF99 0.54 -1.1
89,403 + GFF99 0.54 -0.1
89,438 + GFF99 0.57 -0.9
89,453 - GFF99 0.59 +0.9
89,471 - GFF99 0.60 -0.2
89,480 + GFF99 0.61 +0.9
89,485 + GFF99 0.61 -0.9
89,485 + GFF99 0.61 -0.5
89,490 + GFF99 0.62 -0.2
89,490 + GFF99 0.62 -0.6
89,490 + GFF99 0.62 -0.5
89,490 + GFF99 0.62 -0.1
89,490 + GFF99 0.62 +0.3
89,490 + GFF99 0.62 -0.2
89,495 + GFF99 0.62 +0.0
89,498 - GFF99 0.62 +0.0
89,498 - GFF99 0.62 +0.2
89,498 - GFF99 0.62 +0.8
89,498 - GFF99 0.62 -1.6
89,508 - GFF99 0.63 -1.1
89,508 - GFF99 0.63 +0.1
89,508 - GFF99 0.63 +0.2
89,522 - GFF99 0.64 +1.2
89,538 - GFF99 0.66 -0.3
89,539 - GFF99 0.66 -1.4
89,541 + GFF99 0.66 -2.4
89,541 + GFF99 0.66 -1.2
89,558 + GFF99 0.67 -0.3
89,558 + GFF99 0.67 -1.1
89,558 + GFF99 0.67 -0.6
89,559 - GFF99 0.67 +0.9
89,566 - GFF99 0.68 -0.3
89,576 + GFF99 0.69 +0.5
89,576 + GFF99 0.69 +0.3
89,594 + GFF99 0.70 +0.4
89,594 + GFF99 0.70 +0.9
89,602 - GFF99 0.71 -1.3
89,615 + GFF99 0.72 +1.0
89,623 - GFF99 0.73 +0.8
89,710 + GFF99 0.80 -0.6
89,710 + GFF99 0.80 +0.5
89,731 + GFF99 0.82 +0.6
89,750 + GFF99 0.83 -1.1
89,750 + GFF99 0.83 -0.3
89,758 - GFF99 0.84 +0.2
89,777 + GFF99 0.85 -1.1
89,795 - GFF99 0.87 -0.5
89,795 - GFF99 0.87 +0.3
89,802 - GFF99 0.87 -2.9
89,820 - GFF99 0.89 +1.2
89,829 - GFF99 0.90 -1.5
89,859 - +0.1
89,861 - -0.7
89,872 + +0.7
89,872 + -1.6
89,872 + +0.4
89,872 + -0.8
89,880 - +0.6
89,880 - +1.8
89,891 - +0.6
89,909 + -1.1
89,909 + +0.2
89,909 + -1.1
89,917 - -0.3
89,917 - +0.1
89,918 + +0.9
89,926 - +0.1
89,968 + -1.0
89,968 + +0.5
89,968 + -1.0
89,968 + +0.6
89,975 + +0.3
89,975 - -1.9
89,976 - -1.2
89,976 - -0.1
89,977 + +0.5
89,977 + +0.1
89,977 + -0.5
89,977 + -1.1
89,977 + -2.5
89,985 - -0.9
89,985 - -0.1
89,985 - -0.9
89,985 - -1.5
89,985 - +0.3
90,045 - +0.4
90,045 - -0.8
90,046 - +0.1
90,049 - -0.8
90,066 - -0.3
90,083 - +1.7
90,092 + -3.1
90,094 + -1.4
90,100 + +0.9
90,100 - -2.0
90,101 - -2.2
90,113 + +0.3
90,123 - +0.1
91,334 - -1.1
91,334 - +1.6
91,365 - -0.4
91,408 - -0.3
91,410 + -0.4
91,413 - -0.1
91,463 + +0.5
91,490 - -1.4

Or see this region's nucleotide sequence