Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_14075 and OKGIIK_14080 are separated by 18 nucleotides OKGIIK_14080 and mtnX are separated by 178 nucleotides mtnX and argD are separated by 62 nucleotides
OKGIIK_14075: OKGIIK_14075 - Transporter, at 3,060,931 to 3,062,382
_14075
OKGIIK_14080: OKGIIK_14080 - Structural protein MipA, at 3,062,401 to 3,063,177
_14080
OKGIIK_14085: mtnX - phosphatase, at 3,063,356 to 3,064,054
mtnX
OKGIIK_14090: argD - aspartate aminotransferase family protein, at 3,064,117 to 3,065,517
argD
Position (kb)
3063
3064
3065 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3062.361 kb on + strand at 3062.361 kb on + strand at 3062.361 kb on + strand at 3062.361 kb on + strand at 3062.362 kb on - strand at 3062.362 kb on - strand at 3062.362 kb on - strand at 3062.402 kb on + strand at 3062.402 kb on + strand at 3062.402 kb on + strand at 3062.403 kb on - strand at 3062.403 kb on - strand at 3062.403 kb on - strand at 3062.403 kb on - strand at 3062.403 kb on - strand at 3062.403 kb on - strand at 3062.411 kb on + strand at 3062.411 kb on + strand at 3062.411 kb on + strand at 3062.412 kb on - strand at 3062.412 kb on - strand at 3062.412 kb on - strand at 3062.412 kb on - strand at 3062.412 kb on - strand at 3062.501 kb on + strand, within OKGIIK_14080 at 3062.501 kb on + strand, within OKGIIK_14080 at 3062.501 kb on + strand, within OKGIIK_14080 at 3062.501 kb on + strand, within OKGIIK_14080 at 3062.502 kb on - strand, within OKGIIK_14080 at 3062.502 kb on - strand, within OKGIIK_14080 at 3062.502 kb on - strand, within OKGIIK_14080 at 3062.502 kb on - strand, within OKGIIK_14080 at 3062.744 kb on + strand, within OKGIIK_14080 at 3062.745 kb on - strand, within OKGIIK_14080 at 3063.208 kb on + strand at 3063.209 kb on - strand at 3063.209 kb on - strand at 3063.209 kb on - strand at 3063.209 kb on - strand at 3063.320 kb on + strand at 3063.659 kb on + strand, within mtnX at 3063.660 kb on - strand, within mtnX at 3063.660 kb on - strand, within mtnX at 3063.950 kb on + strand, within mtnX at 3063.950 kb on + strand, within mtnX at 3063.950 kb on + strand, within mtnX at 3063.950 kb on + strand, within mtnX at 3063.950 kb on + strand, within mtnX at 3063.950 kb on + strand, within mtnX at 3063.950 kb on + strand, within mtnX at 3063.950 kb on + strand, within mtnX at 3063.950 kb on + strand, within mtnX at 3063.950 kb on + strand, within mtnX at 3063.950 kb on + strand, within mtnX at 3063.950 kb on + strand, within mtnX at 3063.950 kb on + strand, within mtnX at 3063.950 kb on + strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.951 kb on - strand, within mtnX at 3063.986 kb on + strand at 3063.986 kb on + strand at 3063.986 kb on + strand at 3063.987 kb on - strand at 3063.987 kb on - strand at 3063.987 kb on - strand at 3063.987 kb on - strand at 3063.987 kb on - strand at 3064.009 kb on + strand at 3064.009 kb on + strand at 3064.010 kb on - strand at 3064.032 kb on - strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.183 kb on + strand at 3064.184 kb on - strand at 3064.184 kb on - strand at 3064.184 kb on - strand at 3064.184 kb on - strand at 3064.184 kb on - strand at 3064.184 kb on - strand at 3064.184 kb on - strand at 3064.210 kb on + strand at 3064.210 kb on + strand at 3064.210 kb on + strand at 3064.210 kb on + strand at 3064.211 kb on - strand at 3064.252 kb on + strand at 3064.252 kb on + strand at 3064.252 kb on + strand at 3064.252 kb on + strand at 3064.252 kb on + strand at 3064.252 kb on + strand at 3064.252 kb on + strand at 3064.252 kb on + strand at 3064.252 kb on + strand at 3064.252 kb on + strand at 3064.252 kb on + strand at 3064.252 kb on + strand at 3064.252 kb on + strand at 3064.252 kb on + strand at 3064.253 kb on - strand at 3064.253 kb on - strand at 3064.253 kb on - strand at 3064.253 kb on - strand at 3064.253 kb on - strand at 3064.253 kb on - strand at 3064.253 kb on - strand at 3064.253 kb on - strand at 3064.253 kb on - strand at 3064.253 kb on - strand at 3064.253 kb on - strand at 3064.253 kb on - strand at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.258 kb on + strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.259 kb on - strand, within argD at 3064.300 kb on + strand, within argD at 3064.301 kb on - strand, within argD at 3064.301 kb on - strand, within argD at 3064.390 kb on + strand, within argD at 3064.390 kb on + strand, within argD at 3064.390 kb on + strand, within argD at 3064.391 kb on - strand, within argD at 3064.391 kb on - strand, within argD at 3064.391 kb on - strand, within argD at 3064.391 kb on - strand, within argD at 3064.528 kb on + strand, within argD at 3064.528 kb on + strand, within argD at 3064.528 kb on + strand, within argD at 3064.528 kb on + strand, within argD at 3064.528 kb on + strand, within argD at 3064.528 kb on + strand, within argD at 3064.528 kb on + strand, within argD at 3064.529 kb on - strand, within argD at 3064.529 kb on - strand, within argD at 3064.529 kb on - strand, within argD at 3064.529 kb on - strand, within argD at 3064.529 kb on - strand, within argD at 3064.529 kb on - strand, within argD at 3064.529 kb on - strand, within argD at 3064.612 kb on + strand, within argD at 3064.613 kb on - strand, within argD at 3064.711 kb on + strand, within argD at 3064.759 kb on + strand, within argD at 3064.759 kb on + strand, within argD at 3064.759 kb on + strand, within argD at 3064.760 kb on - strand, within argD at 3064.810 kb on + strand, within argD at 3064.810 kb on + strand, within argD at 3064.810 kb on + strand, within argD at 3064.811 kb on - strand, within argD at 3064.811 kb on - strand, within argD at 3064.811 kb on - strand, within argD at 3064.841 kb on - strand, within argD at 3064.841 kb on - strand, within argD
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 3,062,361 + -0.1 3,062,361 + +0.1 3,062,361 + -1.1 3,062,361 + +0.1 3,062,362 - -0.5 3,062,362 - -1.1 3,062,362 - +0.3 3,062,402 + -1.1 3,062,402 + +0.6 3,062,402 + -1.5 3,062,403 - +1.2 3,062,403 - -0.7 3,062,403 - +0.6 3,062,403 - +1.8 3,062,403 - -0.4 3,062,403 - +1.0 3,062,411 + +1.0 3,062,411 + +0.5 3,062,411 + -0.7 3,062,412 - -0.1 3,062,412 - -0.3 3,062,412 - -2.8 3,062,412 - -0.3 3,062,412 - -0.0 3,062,501 + OKGIIK_14080 0.13 +1.1 3,062,501 + OKGIIK_14080 0.13 -0.3 3,062,501 + OKGIIK_14080 0.13 +0.1 3,062,501 + OKGIIK_14080 0.13 -0.4 3,062,502 - OKGIIK_14080 0.13 +0.0 3,062,502 - OKGIIK_14080 0.13 -1.0 3,062,502 - OKGIIK_14080 0.13 -0.9 3,062,502 - OKGIIK_14080 0.13 +0.2 3,062,744 + OKGIIK_14080 0.44 -0.4 3,062,745 - OKGIIK_14080 0.44 +0.3 3,063,208 + -0.0 3,063,209 - +0.7 3,063,209 - -1.0 3,063,209 - -1.9 3,063,209 - +0.0 3,063,320 + +0.5 3,063,659 + mtnX OKGIIK_14085 0.43 -0.1 3,063,660 - mtnX OKGIIK_14085 0.43 -1.6 3,063,660 - mtnX OKGIIK_14085 0.43 -0.5 3,063,950 + mtnX OKGIIK_14085 0.85 -1.1 3,063,950 + mtnX OKGIIK_14085 0.85 -0.5 3,063,950 + mtnX OKGIIK_14085 0.85 +1.1 3,063,950 + mtnX OKGIIK_14085 0.85 -1.6 3,063,950 + mtnX OKGIIK_14085 0.85 -0.1 3,063,950 + mtnX OKGIIK_14085 0.85 -1.1 3,063,950 + mtnX OKGIIK_14085 0.85 -1.7 3,063,950 + mtnX OKGIIK_14085 0.85 -0.9 3,063,950 + mtnX OKGIIK_14085 0.85 -1.1 3,063,950 + mtnX OKGIIK_14085 0.85 -0.9 3,063,950 + mtnX OKGIIK_14085 0.85 +0.1 3,063,950 + mtnX OKGIIK_14085 0.85 -1.3 3,063,950 + mtnX OKGIIK_14085 0.85 -0.9 3,063,950 + mtnX OKGIIK_14085 0.85 -0.1 3,063,951 - mtnX OKGIIK_14085 0.85 +0.7 3,063,951 - mtnX OKGIIK_14085 0.85 -2.4 3,063,951 - mtnX OKGIIK_14085 0.85 -1.4 3,063,951 - mtnX OKGIIK_14085 0.85 -2.1 3,063,951 - mtnX OKGIIK_14085 0.85 -0.9 3,063,951 - mtnX OKGIIK_14085 0.85 -0.9 3,063,951 - mtnX OKGIIK_14085 0.85 -1.1 3,063,951 - mtnX OKGIIK_14085 0.85 -0.5 3,063,951 - mtnX OKGIIK_14085 0.85 +0.1 3,063,951 - mtnX OKGIIK_14085 0.85 -0.8 3,063,951 - mtnX OKGIIK_14085 0.85 +1.0 3,063,951 - mtnX OKGIIK_14085 0.85 -0.0 3,063,951 - mtnX OKGIIK_14085 0.85 -0.5 3,063,951 - mtnX OKGIIK_14085 0.85 -0.9 3,063,951 - mtnX OKGIIK_14085 0.85 -1.9 3,063,951 - mtnX OKGIIK_14085 0.85 -1.8 3,063,951 - mtnX OKGIIK_14085 0.85 -0.9 3,063,951 - mtnX OKGIIK_14085 0.85 -1.1 3,063,986 + -0.5 3,063,986 + -1.9 3,063,986 + +0.2 3,063,987 - -1.3 3,063,987 - +0.0 3,063,987 - -2.1 3,063,987 - -2.5 3,063,987 - -2.4 3,064,009 + +2.0 3,064,009 + -1.5 3,064,010 - +0.1 3,064,032 - -2.7 3,064,183 + -0.9 3,064,183 + +0.6 3,064,183 + +0.1 3,064,183 + -0.4 3,064,183 + -1.0 3,064,183 + +0.1 3,064,183 + -2.2 3,064,183 + -0.5 3,064,183 + -1.3 3,064,183 + +0.9 3,064,183 + +0.5 3,064,183 + -1.7 3,064,183 + -0.0 3,064,183 + +0.2 3,064,183 + -1.7 3,064,183 + -0.9 3,064,183 + +0.2 3,064,184 - +1.2 3,064,184 - -0.9 3,064,184 - -1.7 3,064,184 - -2.4 3,064,184 - -0.1 3,064,184 - -1.2 3,064,184 - -3.2 3,064,210 + -1.9 3,064,210 + -0.5 3,064,210 + -1.3 3,064,210 + -2.1 3,064,211 - +0.5 3,064,252 + -0.5 3,064,252 + -1.5 3,064,252 + -2.2 3,064,252 + -0.3 3,064,252 + -0.9 3,064,252 + -0.5 3,064,252 + +0.4 3,064,252 + -0.5 3,064,252 + -2.5 3,064,252 + +0.2 3,064,252 + -0.9 3,064,252 + -0.5 3,064,252 + -1.5 3,064,252 + -0.5 3,064,253 - +0.6 3,064,253 - -1.0 3,064,253 - -0.5 3,064,253 - -1.4 3,064,253 - -1.6 3,064,253 - +0.2 3,064,253 - +0.0 3,064,253 - -0.5 3,064,253 - -0.9 3,064,253 - -0.7 3,064,253 - -0.9 3,064,253 - +0.1 3,064,258 + argD OKGIIK_14090 0.10 -0.9 3,064,258 + argD OKGIIK_14090 0.10 -0.1 3,064,258 + argD OKGIIK_14090 0.10 -1.1 3,064,258 + argD OKGIIK_14090 0.10 -0.9 3,064,258 + argD OKGIIK_14090 0.10 -0.5 3,064,258 + argD OKGIIK_14090 0.10 -1.3 3,064,258 + argD OKGIIK_14090 0.10 -0.5 3,064,258 + argD OKGIIK_14090 0.10 -0.3 3,064,258 + argD OKGIIK_14090 0.10 +1.1 3,064,258 + argD OKGIIK_14090 0.10 -2.2 3,064,258 + argD OKGIIK_14090 0.10 -2.0 3,064,258 + argD OKGIIK_14090 0.10 -0.5 3,064,258 + argD OKGIIK_14090 0.10 -0.9 3,064,258 + argD OKGIIK_14090 0.10 +0.0 3,064,258 + argD OKGIIK_14090 0.10 -2.0 3,064,258 + argD OKGIIK_14090 0.10 -0.9 3,064,258 + argD OKGIIK_14090 0.10 -2.0 3,064,258 + argD OKGIIK_14090 0.10 -1.3 3,064,258 + argD OKGIIK_14090 0.10 +0.6 3,064,258 + argD OKGIIK_14090 0.10 +0.7 3,064,259 - argD OKGIIK_14090 0.10 -0.7 3,064,259 - argD OKGIIK_14090 0.10 +0.5 3,064,259 - argD OKGIIK_14090 0.10 -0.9 3,064,259 - argD OKGIIK_14090 0.10 -2.5 3,064,259 - argD OKGIIK_14090 0.10 -0.3 3,064,259 - argD OKGIIK_14090 0.10 -0.7 3,064,259 - argD OKGIIK_14090 0.10 -1.5 3,064,259 - argD OKGIIK_14090 0.10 -2.2 3,064,259 - argD OKGIIK_14090 0.10 +0.5 3,064,259 - argD OKGIIK_14090 0.10 +0.1 3,064,259 - argD OKGIIK_14090 0.10 +1.2 3,064,259 - argD OKGIIK_14090 0.10 -1.5 3,064,259 - argD OKGIIK_14090 0.10 +0.3 3,064,259 - argD OKGIIK_14090 0.10 +0.8 3,064,259 - argD OKGIIK_14090 0.10 -2.7 3,064,259 - argD OKGIIK_14090 0.10 +1.0 3,064,259 - argD OKGIIK_14090 0.10 -1.5 3,064,259 - argD OKGIIK_14090 0.10 -3.1 3,064,259 - argD OKGIIK_14090 0.10 +0.1 3,064,259 - argD OKGIIK_14090 0.10 -1.1 3,064,300 + argD OKGIIK_14090 0.13 -0.2 3,064,301 - argD OKGIIK_14090 0.13 +0.2 3,064,301 - argD OKGIIK_14090 0.13 -0.1 3,064,390 + argD OKGIIK_14090 0.19 -0.3 3,064,390 + argD OKGIIK_14090 0.19 +0.0 3,064,390 + argD OKGIIK_14090 0.19 -2.1 3,064,391 - argD OKGIIK_14090 0.20 -2.1 3,064,391 - argD OKGIIK_14090 0.20 -0.3 3,064,391 - argD OKGIIK_14090 0.20 -1.5 3,064,391 - argD OKGIIK_14090 0.20 -0.5 3,064,528 + argD OKGIIK_14090 0.29 -3.4 3,064,528 + argD OKGIIK_14090 0.29 -0.5 3,064,528 + argD OKGIIK_14090 0.29 -1.9 3,064,528 + argD OKGIIK_14090 0.29 -1.2 3,064,528 + argD OKGIIK_14090 0.29 -1.5 3,064,528 + argD OKGIIK_14090 0.29 -1.7 3,064,528 + argD OKGIIK_14090 0.29 -0.1 3,064,529 - argD OKGIIK_14090 0.29 -0.3 3,064,529 - argD OKGIIK_14090 0.29 -0.5 3,064,529 - argD OKGIIK_14090 0.29 -0.7 3,064,529 - argD OKGIIK_14090 0.29 -0.9 3,064,529 - argD OKGIIK_14090 0.29 -0.1 3,064,529 - argD OKGIIK_14090 0.29 -2.4 3,064,529 - argD OKGIIK_14090 0.29 -0.8 3,064,612 + argD OKGIIK_14090 0.35 +0.1 3,064,613 - argD OKGIIK_14090 0.35 -0.8 3,064,711 + argD OKGIIK_14090 0.42 -2.4 3,064,759 + argD OKGIIK_14090 0.46 -1.0 3,064,759 + argD OKGIIK_14090 0.46 -0.7 3,064,759 + argD OKGIIK_14090 0.46 +0.0 3,064,760 - argD OKGIIK_14090 0.46 -0.1 3,064,810 + argD OKGIIK_14090 0.49 -2.1 3,064,810 + argD OKGIIK_14090 0.49 -0.1 3,064,810 + argD OKGIIK_14090 0.49 -1.5 3,064,811 - argD OKGIIK_14090 0.50 -2.2 3,064,811 - argD OKGIIK_14090 0.50 -0.8 3,064,811 - argD OKGIIK_14090 0.50 +0.9 3,064,841 - argD OKGIIK_14090 0.52 +0.0 3,064,841 - argD OKGIIK_14090 0.52 +1.1
Or see this region's nucleotide sequence