Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_14085

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_14075 and OKGIIK_14080 are separated by 18 nucleotidesOKGIIK_14080 and mtnX are separated by 178 nucleotidesmtnX and argD are separated by 62 nucleotides OKGIIK_14075: OKGIIK_14075 - Transporter, at 3,060,931 to 3,062,382 _14075 OKGIIK_14080: OKGIIK_14080 - Structural protein MipA, at 3,062,401 to 3,063,177 _14080 OKGIIK_14085: mtnX - phosphatase, at 3,063,356 to 3,064,054 mtnX OKGIIK_14090: argD - aspartate aminotransferase family protein, at 3,064,117 to 3,065,517 argD Position (kb) 3063 3064 3065Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3062.361 kb on + strandat 3062.361 kb on + strandat 3062.361 kb on + strandat 3062.361 kb on + strandat 3062.362 kb on - strandat 3062.362 kb on - strandat 3062.362 kb on - strandat 3062.402 kb on + strandat 3062.402 kb on + strandat 3062.402 kb on + strandat 3062.403 kb on - strandat 3062.403 kb on - strandat 3062.403 kb on - strandat 3062.403 kb on - strandat 3062.403 kb on - strandat 3062.403 kb on - strandat 3062.411 kb on + strandat 3062.411 kb on + strandat 3062.411 kb on + strandat 3062.412 kb on - strandat 3062.412 kb on - strandat 3062.412 kb on - strandat 3062.412 kb on - strandat 3062.412 kb on - strandat 3062.501 kb on + strand, within OKGIIK_14080at 3062.501 kb on + strand, within OKGIIK_14080at 3062.501 kb on + strand, within OKGIIK_14080at 3062.501 kb on + strand, within OKGIIK_14080at 3062.502 kb on - strand, within OKGIIK_14080at 3062.502 kb on - strand, within OKGIIK_14080at 3062.502 kb on - strand, within OKGIIK_14080at 3062.502 kb on - strand, within OKGIIK_14080at 3062.744 kb on + strand, within OKGIIK_14080at 3062.745 kb on - strand, within OKGIIK_14080at 3063.208 kb on + strandat 3063.209 kb on - strandat 3063.209 kb on - strandat 3063.209 kb on - strandat 3063.209 kb on - strandat 3063.320 kb on + strandat 3063.659 kb on + strand, within mtnXat 3063.660 kb on - strand, within mtnXat 3063.660 kb on - strand, within mtnXat 3063.950 kb on + strand, within mtnXat 3063.950 kb on + strand, within mtnXat 3063.950 kb on + strand, within mtnXat 3063.950 kb on + strand, within mtnXat 3063.950 kb on + strand, within mtnXat 3063.950 kb on + strand, within mtnXat 3063.950 kb on + strand, within mtnXat 3063.950 kb on + strand, within mtnXat 3063.950 kb on + strand, within mtnXat 3063.950 kb on + strand, within mtnXat 3063.950 kb on + strand, within mtnXat 3063.950 kb on + strand, within mtnXat 3063.950 kb on + strand, within mtnXat 3063.950 kb on + strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.951 kb on - strand, within mtnXat 3063.986 kb on + strandat 3063.986 kb on + strandat 3063.986 kb on + strandat 3063.987 kb on - strandat 3063.987 kb on - strandat 3063.987 kb on - strandat 3063.987 kb on - strandat 3063.987 kb on - strandat 3064.009 kb on + strandat 3064.009 kb on + strandat 3064.010 kb on - strandat 3064.032 kb on - strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.183 kb on + strandat 3064.184 kb on - strandat 3064.184 kb on - strandat 3064.184 kb on - strandat 3064.184 kb on - strandat 3064.184 kb on - strandat 3064.184 kb on - strandat 3064.184 kb on - strandat 3064.210 kb on + strandat 3064.210 kb on + strandat 3064.210 kb on + strandat 3064.210 kb on + strandat 3064.211 kb on - strandat 3064.252 kb on + strandat 3064.252 kb on + strandat 3064.252 kb on + strandat 3064.252 kb on + strandat 3064.252 kb on + strandat 3064.252 kb on + strandat 3064.252 kb on + strandat 3064.252 kb on + strandat 3064.252 kb on + strandat 3064.252 kb on + strandat 3064.252 kb on + strandat 3064.252 kb on + strandat 3064.252 kb on + strandat 3064.252 kb on + strandat 3064.253 kb on - strandat 3064.253 kb on - strandat 3064.253 kb on - strandat 3064.253 kb on - strandat 3064.253 kb on - strandat 3064.253 kb on - strandat 3064.253 kb on - strandat 3064.253 kb on - strandat 3064.253 kb on - strandat 3064.253 kb on - strandat 3064.253 kb on - strandat 3064.253 kb on - strandat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.258 kb on + strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.259 kb on - strand, within argDat 3064.300 kb on + strand, within argDat 3064.301 kb on - strand, within argDat 3064.301 kb on - strand, within argDat 3064.390 kb on + strand, within argDat 3064.390 kb on + strand, within argDat 3064.390 kb on + strand, within argDat 3064.391 kb on - strand, within argDat 3064.391 kb on - strand, within argDat 3064.391 kb on - strand, within argDat 3064.391 kb on - strand, within argDat 3064.528 kb on + strand, within argDat 3064.528 kb on + strand, within argDat 3064.528 kb on + strand, within argDat 3064.528 kb on + strand, within argDat 3064.528 kb on + strand, within argDat 3064.528 kb on + strand, within argDat 3064.528 kb on + strand, within argDat 3064.529 kb on - strand, within argDat 3064.529 kb on - strand, within argDat 3064.529 kb on - strand, within argDat 3064.529 kb on - strand, within argDat 3064.529 kb on - strand, within argDat 3064.529 kb on - strand, within argDat 3064.529 kb on - strand, within argDat 3064.612 kb on + strand, within argDat 3064.613 kb on - strand, within argDat 3064.711 kb on + strand, within argDat 3064.759 kb on + strand, within argDat 3064.759 kb on + strand, within argDat 3064.759 kb on + strand, within argDat 3064.760 kb on - strand, within argDat 3064.810 kb on + strand, within argDat 3064.810 kb on + strand, within argDat 3064.810 kb on + strand, within argDat 3064.811 kb on - strand, within argDat 3064.811 kb on - strand, within argDat 3064.811 kb on - strand, within argDat 3064.841 kb on - strand, within argDat 3064.841 kb on - strand, within argD

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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3,062,361 + -0.1
3,062,361 + +0.1
3,062,361 + -1.1
3,062,361 + +0.1
3,062,362 - -0.5
3,062,362 - -1.1
3,062,362 - +0.3
3,062,402 + -1.1
3,062,402 + +0.6
3,062,402 + -1.5
3,062,403 - +1.2
3,062,403 - -0.7
3,062,403 - +0.6
3,062,403 - +1.8
3,062,403 - -0.4
3,062,403 - +1.0
3,062,411 + +1.0
3,062,411 + +0.5
3,062,411 + -0.7
3,062,412 - -0.1
3,062,412 - -0.3
3,062,412 - -2.8
3,062,412 - -0.3
3,062,412 - -0.0
3,062,501 + OKGIIK_14080 0.13 +1.1
3,062,501 + OKGIIK_14080 0.13 -0.3
3,062,501 + OKGIIK_14080 0.13 +0.1
3,062,501 + OKGIIK_14080 0.13 -0.4
3,062,502 - OKGIIK_14080 0.13 +0.0
3,062,502 - OKGIIK_14080 0.13 -1.0
3,062,502 - OKGIIK_14080 0.13 -0.9
3,062,502 - OKGIIK_14080 0.13 +0.2
3,062,744 + OKGIIK_14080 0.44 -0.4
3,062,745 - OKGIIK_14080 0.44 +0.3
3,063,208 + -0.0
3,063,209 - +0.7
3,063,209 - -1.0
3,063,209 - -1.9
3,063,209 - +0.0
3,063,320 + +0.5
3,063,659 + mtnX OKGIIK_14085 0.43 -0.1
3,063,660 - mtnX OKGIIK_14085 0.43 -1.6
3,063,660 - mtnX OKGIIK_14085 0.43 -0.5
3,063,950 + mtnX OKGIIK_14085 0.85 -1.1
3,063,950 + mtnX OKGIIK_14085 0.85 -0.5
3,063,950 + mtnX OKGIIK_14085 0.85 +1.1
3,063,950 + mtnX OKGIIK_14085 0.85 -1.6
3,063,950 + mtnX OKGIIK_14085 0.85 -0.1
3,063,950 + mtnX OKGIIK_14085 0.85 -1.1
3,063,950 + mtnX OKGIIK_14085 0.85 -1.7
3,063,950 + mtnX OKGIIK_14085 0.85 -0.9
3,063,950 + mtnX OKGIIK_14085 0.85 -1.1
3,063,950 + mtnX OKGIIK_14085 0.85 -0.9
3,063,950 + mtnX OKGIIK_14085 0.85 +0.1
3,063,950 + mtnX OKGIIK_14085 0.85 -1.3
3,063,950 + mtnX OKGIIK_14085 0.85 -0.9
3,063,950 + mtnX OKGIIK_14085 0.85 -0.1
3,063,951 - mtnX OKGIIK_14085 0.85 +0.7
3,063,951 - mtnX OKGIIK_14085 0.85 -2.4
3,063,951 - mtnX OKGIIK_14085 0.85 -1.4
3,063,951 - mtnX OKGIIK_14085 0.85 -2.1
3,063,951 - mtnX OKGIIK_14085 0.85 -0.9
3,063,951 - mtnX OKGIIK_14085 0.85 -0.9
3,063,951 - mtnX OKGIIK_14085 0.85 -1.1
3,063,951 - mtnX OKGIIK_14085 0.85 -0.5
3,063,951 - mtnX OKGIIK_14085 0.85 +0.1
3,063,951 - mtnX OKGIIK_14085 0.85 -0.8
3,063,951 - mtnX OKGIIK_14085 0.85 +1.0
3,063,951 - mtnX OKGIIK_14085 0.85 -0.0
3,063,951 - mtnX OKGIIK_14085 0.85 -0.5
3,063,951 - mtnX OKGIIK_14085 0.85 -0.9
3,063,951 - mtnX OKGIIK_14085 0.85 -1.9
3,063,951 - mtnX OKGIIK_14085 0.85 -1.8
3,063,951 - mtnX OKGIIK_14085 0.85 -0.9
3,063,951 - mtnX OKGIIK_14085 0.85 -1.1
3,063,986 + -0.5
3,063,986 + -1.9
3,063,986 + +0.2
3,063,987 - -1.3
3,063,987 - +0.0
3,063,987 - -2.1
3,063,987 - -2.5
3,063,987 - -2.4
3,064,009 + +2.0
3,064,009 + -1.5
3,064,010 - +0.1
3,064,032 - -2.7
3,064,183 + -0.9
3,064,183 + +0.6
3,064,183 + +0.1
3,064,183 + -0.4
3,064,183 + -1.0
3,064,183 + +0.1
3,064,183 + -2.2
3,064,183 + -0.5
3,064,183 + -1.3
3,064,183 + +0.9
3,064,183 + +0.5
3,064,183 + -1.7
3,064,183 + -0.0
3,064,183 + +0.2
3,064,183 + -1.7
3,064,183 + -0.9
3,064,183 + +0.2
3,064,184 - +1.2
3,064,184 - -0.9
3,064,184 - -1.7
3,064,184 - -2.4
3,064,184 - -0.1
3,064,184 - -1.2
3,064,184 - -3.2
3,064,210 + -1.9
3,064,210 + -0.5
3,064,210 + -1.3
3,064,210 + -2.1
3,064,211 - +0.5
3,064,252 + -0.5
3,064,252 + -1.5
3,064,252 + -2.2
3,064,252 + -0.3
3,064,252 + -0.9
3,064,252 + -0.5
3,064,252 + +0.4
3,064,252 + -0.5
3,064,252 + -2.5
3,064,252 + +0.2
3,064,252 + -0.9
3,064,252 + -0.5
3,064,252 + -1.5
3,064,252 + -0.5
3,064,253 - +0.6
3,064,253 - -1.0
3,064,253 - -0.5
3,064,253 - -1.4
3,064,253 - -1.6
3,064,253 - +0.2
3,064,253 - +0.0
3,064,253 - -0.5
3,064,253 - -0.9
3,064,253 - -0.7
3,064,253 - -0.9
3,064,253 - +0.1
3,064,258 + argD OKGIIK_14090 0.10 -0.9
3,064,258 + argD OKGIIK_14090 0.10 -0.1
3,064,258 + argD OKGIIK_14090 0.10 -1.1
3,064,258 + argD OKGIIK_14090 0.10 -0.9
3,064,258 + argD OKGIIK_14090 0.10 -0.5
3,064,258 + argD OKGIIK_14090 0.10 -1.3
3,064,258 + argD OKGIIK_14090 0.10 -0.5
3,064,258 + argD OKGIIK_14090 0.10 -0.3
3,064,258 + argD OKGIIK_14090 0.10 +1.1
3,064,258 + argD OKGIIK_14090 0.10 -2.2
3,064,258 + argD OKGIIK_14090 0.10 -2.0
3,064,258 + argD OKGIIK_14090 0.10 -0.5
3,064,258 + argD OKGIIK_14090 0.10 -0.9
3,064,258 + argD OKGIIK_14090 0.10 +0.0
3,064,258 + argD OKGIIK_14090 0.10 -2.0
3,064,258 + argD OKGIIK_14090 0.10 -0.9
3,064,258 + argD OKGIIK_14090 0.10 -2.0
3,064,258 + argD OKGIIK_14090 0.10 -1.3
3,064,258 + argD OKGIIK_14090 0.10 +0.6
3,064,258 + argD OKGIIK_14090 0.10 +0.7
3,064,259 - argD OKGIIK_14090 0.10 -0.7
3,064,259 - argD OKGIIK_14090 0.10 +0.5
3,064,259 - argD OKGIIK_14090 0.10 -0.9
3,064,259 - argD OKGIIK_14090 0.10 -2.5
3,064,259 - argD OKGIIK_14090 0.10 -0.3
3,064,259 - argD OKGIIK_14090 0.10 -0.7
3,064,259 - argD OKGIIK_14090 0.10 -1.5
3,064,259 - argD OKGIIK_14090 0.10 -2.2
3,064,259 - argD OKGIIK_14090 0.10 +0.5
3,064,259 - argD OKGIIK_14090 0.10 +0.1
3,064,259 - argD OKGIIK_14090 0.10 +1.2
3,064,259 - argD OKGIIK_14090 0.10 -1.5
3,064,259 - argD OKGIIK_14090 0.10 +0.3
3,064,259 - argD OKGIIK_14090 0.10 +0.8
3,064,259 - argD OKGIIK_14090 0.10 -2.7
3,064,259 - argD OKGIIK_14090 0.10 +1.0
3,064,259 - argD OKGIIK_14090 0.10 -1.5
3,064,259 - argD OKGIIK_14090 0.10 -3.1
3,064,259 - argD OKGIIK_14090 0.10 +0.1
3,064,259 - argD OKGIIK_14090 0.10 -1.1
3,064,300 + argD OKGIIK_14090 0.13 -0.2
3,064,301 - argD OKGIIK_14090 0.13 +0.2
3,064,301 - argD OKGIIK_14090 0.13 -0.1
3,064,390 + argD OKGIIK_14090 0.19 -0.3
3,064,390 + argD OKGIIK_14090 0.19 +0.0
3,064,390 + argD OKGIIK_14090 0.19 -2.1
3,064,391 - argD OKGIIK_14090 0.20 -2.1
3,064,391 - argD OKGIIK_14090 0.20 -0.3
3,064,391 - argD OKGIIK_14090 0.20 -1.5
3,064,391 - argD OKGIIK_14090 0.20 -0.5
3,064,528 + argD OKGIIK_14090 0.29 -3.4
3,064,528 + argD OKGIIK_14090 0.29 -0.5
3,064,528 + argD OKGIIK_14090 0.29 -1.9
3,064,528 + argD OKGIIK_14090 0.29 -1.2
3,064,528 + argD OKGIIK_14090 0.29 -1.5
3,064,528 + argD OKGIIK_14090 0.29 -1.7
3,064,528 + argD OKGIIK_14090 0.29 -0.1
3,064,529 - argD OKGIIK_14090 0.29 -0.3
3,064,529 - argD OKGIIK_14090 0.29 -0.5
3,064,529 - argD OKGIIK_14090 0.29 -0.7
3,064,529 - argD OKGIIK_14090 0.29 -0.9
3,064,529 - argD OKGIIK_14090 0.29 -0.1
3,064,529 - argD OKGIIK_14090 0.29 -2.4
3,064,529 - argD OKGIIK_14090 0.29 -0.8
3,064,612 + argD OKGIIK_14090 0.35 +0.1
3,064,613 - argD OKGIIK_14090 0.35 -0.8
3,064,711 + argD OKGIIK_14090 0.42 -2.4
3,064,759 + argD OKGIIK_14090 0.46 -1.0
3,064,759 + argD OKGIIK_14090 0.46 -0.7
3,064,759 + argD OKGIIK_14090 0.46 +0.0
3,064,760 - argD OKGIIK_14090 0.46 -0.1
3,064,810 + argD OKGIIK_14090 0.49 -2.1
3,064,810 + argD OKGIIK_14090 0.49 -0.1
3,064,810 + argD OKGIIK_14090 0.49 -1.5
3,064,811 - argD OKGIIK_14090 0.50 -2.2
3,064,811 - argD OKGIIK_14090 0.50 -0.8
3,064,811 - argD OKGIIK_14090 0.50 +0.9
3,064,841 - argD OKGIIK_14090 0.52 +0.0
3,064,841 - argD OKGIIK_14090 0.52 +1.1

Or see this region's nucleotide sequence