Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_12700

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_12695 and aceE are separated by 52 nucleotidesaceE and pta are separated by 206 nucleotides OKGIIK_12695: OKGIIK_12695 - Sugar phosphate permease, at 2,731,340 to 2,732,953 _12695 OKGIIK_12700: aceE - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 2,733,006 to 2,735,720 aceE OKGIIK_12705: pta - NADP-dependent malic enzyme, at 2,735,927 to 2,738,218 pta Position (kb) 2733 2734 2735 2736Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2732.057 kb on + strand, within OKGIIK_12695at 2732.058 kb on - strand, within OKGIIK_12695at 2732.165 kb on + strand, within OKGIIK_12695at 2732.165 kb on + strand, within OKGIIK_12695at 2732.165 kb on + strand, within OKGIIK_12695at 2732.165 kb on + strand, within OKGIIK_12695at 2732.165 kb on + strand, within OKGIIK_12695at 2732.165 kb on + strand, within OKGIIK_12695at 2732.165 kb on + strand, within OKGIIK_12695at 2732.166 kb on - strand, within OKGIIK_12695at 2732.166 kb on - strand, within OKGIIK_12695at 2732.166 kb on - strand, within OKGIIK_12695at 2732.166 kb on - strand, within OKGIIK_12695at 2732.166 kb on - strand, within OKGIIK_12695at 2732.534 kb on + strand, within OKGIIK_12695at 2732.534 kb on + strand, within OKGIIK_12695at 2732.534 kb on + strand, within OKGIIK_12695at 2732.534 kb on + strand, within OKGIIK_12695at 2732.534 kb on + strand, within OKGIIK_12695at 2732.534 kb on + strand, within OKGIIK_12695at 2732.534 kb on + strand, within OKGIIK_12695at 2732.534 kb on + strand, within OKGIIK_12695at 2732.535 kb on - strand, within OKGIIK_12695at 2732.535 kb on - strand, within OKGIIK_12695at 2732.535 kb on - strand, within OKGIIK_12695at 2732.535 kb on - strand, within OKGIIK_12695at 2732.535 kb on - strand, within OKGIIK_12695at 2732.535 kb on - strand, within OKGIIK_12695at 2732.535 kb on - strand, within OKGIIK_12695at 2732.723 kb on + strand, within OKGIIK_12695at 2732.723 kb on + strand, within OKGIIK_12695at 2732.724 kb on - strand, within OKGIIK_12695at 2732.724 kb on - strand, within OKGIIK_12695at 2732.952 kb on - strandat 2732.952 kb on - strandat 2732.952 kb on - strandat 2733.046 kb on + strandat 2733.263 kb on - strandat 2733.565 kb on + strand, within aceEat 2733.565 kb on + strand, within aceEat 2733.565 kb on + strand, within aceEat 2733.565 kb on + strand, within aceEat 2733.565 kb on + strand, within aceEat 2733.565 kb on + strand, within aceEat 2733.565 kb on + strand, within aceEat 2733.566 kb on - strand, within aceEat 2733.589 kb on + strand, within aceEat 2733.590 kb on - strand, within aceEat 2733.619 kb on + strand, within aceEat 2733.619 kb on + strand, within aceEat 2733.619 kb on + strand, within aceEat 2733.619 kb on + strand, within aceEat 2733.620 kb on - strand, within aceEat 2733.620 kb on - strand, within aceEat 2733.620 kb on - strand, within aceEat 2733.643 kb on + strand, within aceEat 2733.643 kb on + strand, within aceEat 2733.643 kb on + strand, within aceEat 2733.644 kb on - strand, within aceEat 2733.644 kb on - strand, within aceEat 2733.644 kb on - strand, within aceEat 2733.644 kb on - strand, within aceEat 2733.644 kb on - strand, within aceEat 2733.644 kb on - strand, within aceEat 2733.644 kb on - strand, within aceEat 2733.644 kb on - strand, within aceEat 2733.646 kb on + strand, within aceEat 2733.646 kb on + strand, within aceEat 2733.670 kb on + strand, within aceEat 2733.670 kb on + strand, within aceEat 2733.671 kb on - strand, within aceEat 2733.671 kb on - strand, within aceEat 2733.713 kb on - strand, within aceEat 2733.730 kb on + strand, within aceEat 2733.731 kb on - strand, within aceEat 2733.731 kb on - strand, within aceEat 2733.904 kb on + strand, within aceEat 2733.904 kb on + strand, within aceEat 2733.905 kb on - strand, within aceEat 2733.907 kb on + strand, within aceEat 2733.907 kb on + strand, within aceEat 2733.907 kb on + strand, within aceEat 2733.908 kb on - strand, within aceEat 2733.908 kb on - strand, within aceEat 2733.908 kb on - strand, within aceEat 2733.946 kb on + strand, within aceEat 2733.946 kb on + strand, within aceEat 2733.947 kb on - strand, within aceEat 2733.947 kb on - strand, within aceEat 2733.977 kb on + strand, within aceEat 2733.977 kb on + strand, within aceEat 2733.977 kb on + strand, within aceEat 2734.033 kb on + strand, within aceEat 2734.033 kb on + strand, within aceEat 2734.036 kb on + strand, within aceEat 2734.036 kb on + strand, within aceEat 2734.036 kb on + strand, within aceEat 2734.036 kb on + strand, within aceEat 2734.037 kb on - strand, within aceEat 2734.037 kb on - strand, within aceEat 2734.037 kb on - strand, within aceEat 2734.037 kb on - strand, within aceEat 2734.037 kb on - strand, within aceEat 2734.066 kb on + strand, within aceEat 2734.067 kb on - strand, within aceEat 2734.087 kb on + strand, within aceEat 2734.087 kb on + strand, within aceEat 2734.088 kb on - strand, within aceEat 2734.088 kb on - strand, within aceEat 2734.354 kb on + strand, within aceEat 2734.354 kb on + strand, within aceEat 2734.354 kb on + strand, within aceEat 2734.354 kb on + strand, within aceEat 2734.354 kb on + strand, within aceEat 2734.354 kb on + strand, within aceEat 2734.354 kb on + strand, within aceEat 2734.355 kb on - strand, within aceEat 2734.355 kb on - strand, within aceEat 2734.355 kb on - strand, within aceEat 2734.355 kb on - strand, within aceEat 2734.355 kb on - strand, within aceEat 2734.387 kb on + strand, within aceEat 2734.387 kb on + strand, within aceEat 2734.387 kb on + strand, within aceEat 2734.388 kb on - strand, within aceEat 2734.598 kb on - strand, within aceEat 2734.711 kb on + strand, within aceEat 2734.742 kb on - strand, within aceEat 2734.817 kb on - strand, within aceEat 2734.863 kb on + strand, within aceEat 2735.077 kb on + strand, within aceEat 2735.176 kb on + strand, within aceEat 2735.269 kb on + strand, within aceEat 2735.270 kb on - strand, within aceEat 2735.270 kb on - strand, within aceEat 2735.362 kb on + strand, within aceEat 2735.362 kb on + strand, within aceEat 2735.362 kb on + strand, within aceEat 2735.362 kb on + strand, within aceEat 2735.363 kb on - strand, within aceEat 2735.536 kb on + strandat 2735.537 kb on - strandat 2735.537 kb on - strandat 2735.809 kb on + strandat 2736.099 kb on + strandat 2736.295 kb on + strand, within ptaat 2736.435 kb on + strand, within ptaat 2736.436 kb on - strand, within ptaat 2736.541 kb on - strand, within ptaat 2736.678 kb on + strand, within pta

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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2,732,057 + OKGIIK_12695 0.44 +1.1
2,732,058 - OKGIIK_12695 0.44 -0.9
2,732,165 + OKGIIK_12695 0.51 +0.2
2,732,165 + OKGIIK_12695 0.51 +0.2
2,732,165 + OKGIIK_12695 0.51 +1.5
2,732,165 + OKGIIK_12695 0.51 -1.1
2,732,165 + OKGIIK_12695 0.51 -0.7
2,732,165 + OKGIIK_12695 0.51 +0.8
2,732,165 + OKGIIK_12695 0.51 -0.1
2,732,166 - OKGIIK_12695 0.51 +1.3
2,732,166 - OKGIIK_12695 0.51 +0.7
2,732,166 - OKGIIK_12695 0.51 -1.6
2,732,166 - OKGIIK_12695 0.51 +0.1
2,732,166 - OKGIIK_12695 0.51 +0.4
2,732,534 + OKGIIK_12695 0.74 +0.8
2,732,534 + OKGIIK_12695 0.74 -0.5
2,732,534 + OKGIIK_12695 0.74 -1.1
2,732,534 + OKGIIK_12695 0.74 +0.8
2,732,534 + OKGIIK_12695 0.74 +0.5
2,732,534 + OKGIIK_12695 0.74 +0.3
2,732,534 + OKGIIK_12695 0.74 -0.2
2,732,534 + OKGIIK_12695 0.74 +0.8
2,732,535 - OKGIIK_12695 0.74 +0.5
2,732,535 - OKGIIK_12695 0.74 -0.3
2,732,535 - OKGIIK_12695 0.74 -1.1
2,732,535 - OKGIIK_12695 0.74 -0.7
2,732,535 - OKGIIK_12695 0.74 -0.7
2,732,535 - OKGIIK_12695 0.74 -0.8
2,732,535 - OKGIIK_12695 0.74 -0.4
2,732,723 + OKGIIK_12695 0.86 +0.2
2,732,723 + OKGIIK_12695 0.86 +2.0
2,732,724 - OKGIIK_12695 0.86 -0.5
2,732,724 - OKGIIK_12695 0.86 -1.3
2,732,952 - -0.5
2,732,952 - +1.0
2,732,952 - +1.1
2,733,046 + +0.9
2,733,263 - -1.1
2,733,565 + aceE OKGIIK_12700 0.21 +1.5
2,733,565 + aceE OKGIIK_12700 0.21 -1.2
2,733,565 + aceE OKGIIK_12700 0.21 -1.7
2,733,565 + aceE OKGIIK_12700 0.21 +1.2
2,733,565 + aceE OKGIIK_12700 0.21 -0.8
2,733,565 + aceE OKGIIK_12700 0.21 -0.3
2,733,565 + aceE OKGIIK_12700 0.21 -1.1
2,733,566 - aceE OKGIIK_12700 0.21 -0.8
2,733,589 + aceE OKGIIK_12700 0.21 -0.5
2,733,590 - aceE OKGIIK_12700 0.22 -0.1
2,733,619 + aceE OKGIIK_12700 0.23 -1.5
2,733,619 + aceE OKGIIK_12700 0.23 +0.3
2,733,619 + aceE OKGIIK_12700 0.23 -1.5
2,733,619 + aceE OKGIIK_12700 0.23 +0.5
2,733,620 - aceE OKGIIK_12700 0.23 -0.8
2,733,620 - aceE OKGIIK_12700 0.23 -1.5
2,733,620 - aceE OKGIIK_12700 0.23 -1.3
2,733,643 + aceE OKGIIK_12700 0.23 -1.3
2,733,643 + aceE OKGIIK_12700 0.23 +0.5
2,733,643 + aceE OKGIIK_12700 0.23 -2.1
2,733,644 - aceE OKGIIK_12700 0.23 -0.3
2,733,644 - aceE OKGIIK_12700 0.23 -0.7
2,733,644 - aceE OKGIIK_12700 0.23 -2.3
2,733,644 - aceE OKGIIK_12700 0.23 +0.3
2,733,644 - aceE OKGIIK_12700 0.23 +1.8
2,733,644 - aceE OKGIIK_12700 0.23 -1.4
2,733,644 - aceE OKGIIK_12700 0.23 -1.5
2,733,644 - aceE OKGIIK_12700 0.23 -2.0
2,733,646 + aceE OKGIIK_12700 0.24 +0.2
2,733,646 + aceE OKGIIK_12700 0.24 -1.5
2,733,670 + aceE OKGIIK_12700 0.24 -2.1
2,733,670 + aceE OKGIIK_12700 0.24 -1.1
2,733,671 - aceE OKGIIK_12700 0.24 -0.6
2,733,671 - aceE OKGIIK_12700 0.24 -1.7
2,733,713 - aceE OKGIIK_12700 0.26 -2.6
2,733,730 + aceE OKGIIK_12700 0.27 -0.5
2,733,731 - aceE OKGIIK_12700 0.27 -0.8
2,733,731 - aceE OKGIIK_12700 0.27 -2.2
2,733,904 + aceE OKGIIK_12700 0.33 +0.8
2,733,904 + aceE OKGIIK_12700 0.33 -0.1
2,733,905 - aceE OKGIIK_12700 0.33 -0.8
2,733,907 + aceE OKGIIK_12700 0.33 -1.1
2,733,907 + aceE OKGIIK_12700 0.33 -0.6
2,733,907 + aceE OKGIIK_12700 0.33 -0.7
2,733,908 - aceE OKGIIK_12700 0.33 -0.9
2,733,908 - aceE OKGIIK_12700 0.33 -0.8
2,733,908 - aceE OKGIIK_12700 0.33 -2.1
2,733,946 + aceE OKGIIK_12700 0.35 -0.4
2,733,946 + aceE OKGIIK_12700 0.35 -2.0
2,733,947 - aceE OKGIIK_12700 0.35 -0.3
2,733,947 - aceE OKGIIK_12700 0.35 -1.8
2,733,977 + aceE OKGIIK_12700 0.36 +0.5
2,733,977 + aceE OKGIIK_12700 0.36 -0.5
2,733,977 + aceE OKGIIK_12700 0.36 -1.6
2,734,033 + aceE OKGIIK_12700 0.38 -0.5
2,734,033 + aceE OKGIIK_12700 0.38 -2.0
2,734,036 + aceE OKGIIK_12700 0.38 -2.1
2,734,036 + aceE OKGIIK_12700 0.38 +1.1
2,734,036 + aceE OKGIIK_12700 0.38 +0.8
2,734,036 + aceE OKGIIK_12700 0.38 -0.8
2,734,037 - aceE OKGIIK_12700 0.38 +1.2
2,734,037 - aceE OKGIIK_12700 0.38 -3.0
2,734,037 - aceE OKGIIK_12700 0.38 -1.1
2,734,037 - aceE OKGIIK_12700 0.38 -0.8
2,734,037 - aceE OKGIIK_12700 0.38 -1.1
2,734,066 + aceE OKGIIK_12700 0.39 -1.7
2,734,067 - aceE OKGIIK_12700 0.39 +0.3
2,734,087 + aceE OKGIIK_12700 0.40 +0.2
2,734,087 + aceE OKGIIK_12700 0.40 -1.5
2,734,088 - aceE OKGIIK_12700 0.40 -0.8
2,734,088 - aceE OKGIIK_12700 0.40 +0.2
2,734,354 + aceE OKGIIK_12700 0.50 -1.7
2,734,354 + aceE OKGIIK_12700 0.50 -2.4
2,734,354 + aceE OKGIIK_12700 0.50 -0.3
2,734,354 + aceE OKGIIK_12700 0.50 -1.1
2,734,354 + aceE OKGIIK_12700 0.50 +0.2
2,734,354 + aceE OKGIIK_12700 0.50 +1.5
2,734,354 + aceE OKGIIK_12700 0.50 -0.5
2,734,355 - aceE OKGIIK_12700 0.50 -2.0
2,734,355 - aceE OKGIIK_12700 0.50 +0.4
2,734,355 - aceE OKGIIK_12700 0.50 +0.2
2,734,355 - aceE OKGIIK_12700 0.50 -1.4
2,734,355 - aceE OKGIIK_12700 0.50 -2.1
2,734,387 + aceE OKGIIK_12700 0.51 -0.2
2,734,387 + aceE OKGIIK_12700 0.51 +0.2
2,734,387 + aceE OKGIIK_12700 0.51 +0.2
2,734,388 - aceE OKGIIK_12700 0.51 +0.0
2,734,598 - aceE OKGIIK_12700 0.59 -1.1
2,734,711 + aceE OKGIIK_12700 0.63 -1.3
2,734,742 - aceE OKGIIK_12700 0.64 -0.2
2,734,817 - aceE OKGIIK_12700 0.67 -0.5
2,734,863 + aceE OKGIIK_12700 0.68 -0.9
2,735,077 + aceE OKGIIK_12700 0.76 -0.5
2,735,176 + aceE OKGIIK_12700 0.80 -1.3
2,735,269 + aceE OKGIIK_12700 0.83 -0.1
2,735,270 - aceE OKGIIK_12700 0.83 -1.5
2,735,270 - aceE OKGIIK_12700 0.83 -0.5
2,735,362 + aceE OKGIIK_12700 0.87 -0.7
2,735,362 + aceE OKGIIK_12700 0.87 -1.1
2,735,362 + aceE OKGIIK_12700 0.87 -2.8
2,735,362 + aceE OKGIIK_12700 0.87 -2.1
2,735,363 - aceE OKGIIK_12700 0.87 -1.2
2,735,536 + -0.8
2,735,537 - -1.5
2,735,537 - -1.7
2,735,809 + -0.0
2,736,099 + -0.5
2,736,295 + pta OKGIIK_12705 0.16 +0.2
2,736,435 + pta OKGIIK_12705 0.22 -1.1
2,736,436 - pta OKGIIK_12705 0.22 -0.4
2,736,541 - pta OKGIIK_12705 0.27 -0.5
2,736,678 + pta OKGIIK_12705 0.33 -1.3

Or see this region's nucleotide sequence