Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_12695 and aceE are separated by 52 nucleotides aceE and pta are separated by 206 nucleotides
OKGIIK_12695: OKGIIK_12695 - Sugar phosphate permease, at 2,731,340 to 2,732,953
_12695
OKGIIK_12700: aceE - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 2,733,006 to 2,735,720
aceE
OKGIIK_12705: pta - NADP-dependent malic enzyme, at 2,735,927 to 2,738,218
pta
Position (kb)
2733
2734
2735
2736 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2732.057 kb on + strand, within OKGIIK_12695 at 2732.058 kb on - strand, within OKGIIK_12695 at 2732.165 kb on + strand, within OKGIIK_12695 at 2732.165 kb on + strand, within OKGIIK_12695 at 2732.165 kb on + strand, within OKGIIK_12695 at 2732.165 kb on + strand, within OKGIIK_12695 at 2732.165 kb on + strand, within OKGIIK_12695 at 2732.165 kb on + strand, within OKGIIK_12695 at 2732.165 kb on + strand, within OKGIIK_12695 at 2732.166 kb on - strand, within OKGIIK_12695 at 2732.166 kb on - strand, within OKGIIK_12695 at 2732.166 kb on - strand, within OKGIIK_12695 at 2732.166 kb on - strand, within OKGIIK_12695 at 2732.166 kb on - strand, within OKGIIK_12695 at 2732.534 kb on + strand, within OKGIIK_12695 at 2732.534 kb on + strand, within OKGIIK_12695 at 2732.534 kb on + strand, within OKGIIK_12695 at 2732.534 kb on + strand, within OKGIIK_12695 at 2732.534 kb on + strand, within OKGIIK_12695 at 2732.534 kb on + strand, within OKGIIK_12695 at 2732.534 kb on + strand, within OKGIIK_12695 at 2732.534 kb on + strand, within OKGIIK_12695 at 2732.535 kb on - strand, within OKGIIK_12695 at 2732.535 kb on - strand, within OKGIIK_12695 at 2732.535 kb on - strand, within OKGIIK_12695 at 2732.535 kb on - strand, within OKGIIK_12695 at 2732.535 kb on - strand, within OKGIIK_12695 at 2732.535 kb on - strand, within OKGIIK_12695 at 2732.535 kb on - strand, within OKGIIK_12695 at 2732.723 kb on + strand, within OKGIIK_12695 at 2732.723 kb on + strand, within OKGIIK_12695 at 2732.724 kb on - strand, within OKGIIK_12695 at 2732.724 kb on - strand, within OKGIIK_12695 at 2732.952 kb on - strand at 2732.952 kb on - strand at 2732.952 kb on - strand at 2733.046 kb on + strand at 2733.263 kb on - strand at 2733.565 kb on + strand, within aceE at 2733.565 kb on + strand, within aceE at 2733.565 kb on + strand, within aceE at 2733.565 kb on + strand, within aceE at 2733.565 kb on + strand, within aceE at 2733.565 kb on + strand, within aceE at 2733.565 kb on + strand, within aceE at 2733.566 kb on - strand, within aceE at 2733.589 kb on + strand, within aceE at 2733.590 kb on - strand, within aceE at 2733.619 kb on + strand, within aceE at 2733.619 kb on + strand, within aceE at 2733.619 kb on + strand, within aceE at 2733.619 kb on + strand, within aceE at 2733.620 kb on - strand, within aceE at 2733.620 kb on - strand, within aceE at 2733.620 kb on - strand, within aceE at 2733.643 kb on + strand, within aceE at 2733.643 kb on + strand, within aceE at 2733.643 kb on + strand, within aceE at 2733.644 kb on - strand, within aceE at 2733.644 kb on - strand, within aceE at 2733.644 kb on - strand, within aceE at 2733.644 kb on - strand, within aceE at 2733.644 kb on - strand, within aceE at 2733.644 kb on - strand, within aceE at 2733.644 kb on - strand, within aceE at 2733.644 kb on - strand, within aceE at 2733.646 kb on + strand, within aceE at 2733.646 kb on + strand, within aceE at 2733.670 kb on + strand, within aceE at 2733.670 kb on + strand, within aceE at 2733.671 kb on - strand, within aceE at 2733.671 kb on - strand, within aceE at 2733.713 kb on - strand, within aceE at 2733.730 kb on + strand, within aceE at 2733.731 kb on - strand, within aceE at 2733.731 kb on - strand, within aceE at 2733.904 kb on + strand, within aceE at 2733.904 kb on + strand, within aceE at 2733.905 kb on - strand, within aceE at 2733.907 kb on + strand, within aceE at 2733.907 kb on + strand, within aceE at 2733.907 kb on + strand, within aceE at 2733.908 kb on - strand, within aceE at 2733.908 kb on - strand, within aceE at 2733.908 kb on - strand, within aceE at 2733.946 kb on + strand, within aceE at 2733.946 kb on + strand, within aceE at 2733.947 kb on - strand, within aceE at 2733.947 kb on - strand, within aceE at 2733.977 kb on + strand, within aceE at 2733.977 kb on + strand, within aceE at 2733.977 kb on + strand, within aceE at 2734.033 kb on + strand, within aceE at 2734.033 kb on + strand, within aceE at 2734.036 kb on + strand, within aceE at 2734.036 kb on + strand, within aceE at 2734.036 kb on + strand, within aceE at 2734.036 kb on + strand, within aceE at 2734.037 kb on - strand, within aceE at 2734.037 kb on - strand, within aceE at 2734.037 kb on - strand, within aceE at 2734.037 kb on - strand, within aceE at 2734.037 kb on - strand, within aceE at 2734.066 kb on + strand, within aceE at 2734.067 kb on - strand, within aceE at 2734.087 kb on + strand, within aceE at 2734.087 kb on + strand, within aceE at 2734.088 kb on - strand, within aceE at 2734.088 kb on - strand, within aceE at 2734.354 kb on + strand, within aceE at 2734.354 kb on + strand, within aceE at 2734.354 kb on + strand, within aceE at 2734.354 kb on + strand, within aceE at 2734.354 kb on + strand, within aceE at 2734.354 kb on + strand, within aceE at 2734.354 kb on + strand, within aceE at 2734.355 kb on - strand, within aceE at 2734.355 kb on - strand, within aceE at 2734.355 kb on - strand, within aceE at 2734.355 kb on - strand, within aceE at 2734.355 kb on - strand, within aceE at 2734.387 kb on + strand, within aceE at 2734.387 kb on + strand, within aceE at 2734.387 kb on + strand, within aceE at 2734.388 kb on - strand, within aceE at 2734.598 kb on - strand, within aceE at 2734.711 kb on + strand, within aceE at 2734.742 kb on - strand, within aceE at 2734.817 kb on - strand, within aceE at 2734.863 kb on + strand, within aceE at 2735.077 kb on + strand, within aceE at 2735.176 kb on + strand, within aceE at 2735.269 kb on + strand, within aceE at 2735.270 kb on - strand, within aceE at 2735.270 kb on - strand, within aceE at 2735.362 kb on + strand, within aceE at 2735.362 kb on + strand, within aceE at 2735.362 kb on + strand, within aceE at 2735.362 kb on + strand, within aceE at 2735.363 kb on - strand, within aceE at 2735.536 kb on + strand at 2735.537 kb on - strand at 2735.537 kb on - strand at 2735.809 kb on + strand at 2736.099 kb on + strand at 2736.295 kb on + strand, within pta at 2736.435 kb on + strand, within pta at 2736.436 kb on - strand, within pta at 2736.541 kb on - strand, within pta at 2736.678 kb on + strand, within pta
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 2,732,057 + OKGIIK_12695 0.44 +1.1 2,732,058 - OKGIIK_12695 0.44 -0.9 2,732,165 + OKGIIK_12695 0.51 +0.2 2,732,165 + OKGIIK_12695 0.51 +0.2 2,732,165 + OKGIIK_12695 0.51 +1.5 2,732,165 + OKGIIK_12695 0.51 -1.1 2,732,165 + OKGIIK_12695 0.51 -0.7 2,732,165 + OKGIIK_12695 0.51 +0.8 2,732,165 + OKGIIK_12695 0.51 -0.1 2,732,166 - OKGIIK_12695 0.51 +1.3 2,732,166 - OKGIIK_12695 0.51 +0.7 2,732,166 - OKGIIK_12695 0.51 -1.6 2,732,166 - OKGIIK_12695 0.51 +0.1 2,732,166 - OKGIIK_12695 0.51 +0.4 2,732,534 + OKGIIK_12695 0.74 +0.8 2,732,534 + OKGIIK_12695 0.74 -0.5 2,732,534 + OKGIIK_12695 0.74 -1.1 2,732,534 + OKGIIK_12695 0.74 +0.8 2,732,534 + OKGIIK_12695 0.74 +0.5 2,732,534 + OKGIIK_12695 0.74 +0.3 2,732,534 + OKGIIK_12695 0.74 -0.2 2,732,534 + OKGIIK_12695 0.74 +0.8 2,732,535 - OKGIIK_12695 0.74 +0.5 2,732,535 - OKGIIK_12695 0.74 -0.3 2,732,535 - OKGIIK_12695 0.74 -1.1 2,732,535 - OKGIIK_12695 0.74 -0.7 2,732,535 - OKGIIK_12695 0.74 -0.7 2,732,535 - OKGIIK_12695 0.74 -0.8 2,732,535 - OKGIIK_12695 0.74 -0.4 2,732,723 + OKGIIK_12695 0.86 +0.2 2,732,723 + OKGIIK_12695 0.86 +2.0 2,732,724 - OKGIIK_12695 0.86 -0.5 2,732,724 - OKGIIK_12695 0.86 -1.3 2,732,952 - -0.5 2,732,952 - +1.0 2,732,952 - +1.1 2,733,046 + +0.9 2,733,263 - -1.1 2,733,565 + aceE OKGIIK_12700 0.21 +1.5 2,733,565 + aceE OKGIIK_12700 0.21 -1.2 2,733,565 + aceE OKGIIK_12700 0.21 -1.7 2,733,565 + aceE OKGIIK_12700 0.21 +1.2 2,733,565 + aceE OKGIIK_12700 0.21 -0.8 2,733,565 + aceE OKGIIK_12700 0.21 -0.3 2,733,565 + aceE OKGIIK_12700 0.21 -1.1 2,733,566 - aceE OKGIIK_12700 0.21 -0.8 2,733,589 + aceE OKGIIK_12700 0.21 -0.5 2,733,590 - aceE OKGIIK_12700 0.22 -0.1 2,733,619 + aceE OKGIIK_12700 0.23 -1.5 2,733,619 + aceE OKGIIK_12700 0.23 +0.3 2,733,619 + aceE OKGIIK_12700 0.23 -1.5 2,733,619 + aceE OKGIIK_12700 0.23 +0.5 2,733,620 - aceE OKGIIK_12700 0.23 -0.8 2,733,620 - aceE OKGIIK_12700 0.23 -1.5 2,733,620 - aceE OKGIIK_12700 0.23 -1.3 2,733,643 + aceE OKGIIK_12700 0.23 -1.3 2,733,643 + aceE OKGIIK_12700 0.23 +0.5 2,733,643 + aceE OKGIIK_12700 0.23 -2.1 2,733,644 - aceE OKGIIK_12700 0.23 -0.3 2,733,644 - aceE OKGIIK_12700 0.23 -0.7 2,733,644 - aceE OKGIIK_12700 0.23 -2.3 2,733,644 - aceE OKGIIK_12700 0.23 +0.3 2,733,644 - aceE OKGIIK_12700 0.23 +1.8 2,733,644 - aceE OKGIIK_12700 0.23 -1.4 2,733,644 - aceE OKGIIK_12700 0.23 -1.5 2,733,644 - aceE OKGIIK_12700 0.23 -2.0 2,733,646 + aceE OKGIIK_12700 0.24 +0.2 2,733,646 + aceE OKGIIK_12700 0.24 -1.5 2,733,670 + aceE OKGIIK_12700 0.24 -2.1 2,733,670 + aceE OKGIIK_12700 0.24 -1.1 2,733,671 - aceE OKGIIK_12700 0.24 -0.6 2,733,671 - aceE OKGIIK_12700 0.24 -1.7 2,733,713 - aceE OKGIIK_12700 0.26 -2.6 2,733,730 + aceE OKGIIK_12700 0.27 -0.5 2,733,731 - aceE OKGIIK_12700 0.27 -0.8 2,733,731 - aceE OKGIIK_12700 0.27 -2.2 2,733,904 + aceE OKGIIK_12700 0.33 +0.8 2,733,904 + aceE OKGIIK_12700 0.33 -0.1 2,733,905 - aceE OKGIIK_12700 0.33 -0.8 2,733,907 + aceE OKGIIK_12700 0.33 -1.1 2,733,907 + aceE OKGIIK_12700 0.33 -0.6 2,733,907 + aceE OKGIIK_12700 0.33 -0.7 2,733,908 - aceE OKGIIK_12700 0.33 -0.9 2,733,908 - aceE OKGIIK_12700 0.33 -0.8 2,733,908 - aceE OKGIIK_12700 0.33 -2.1 2,733,946 + aceE OKGIIK_12700 0.35 -0.4 2,733,946 + aceE OKGIIK_12700 0.35 -2.0 2,733,947 - aceE OKGIIK_12700 0.35 -0.3 2,733,947 - aceE OKGIIK_12700 0.35 -1.8 2,733,977 + aceE OKGIIK_12700 0.36 +0.5 2,733,977 + aceE OKGIIK_12700 0.36 -0.5 2,733,977 + aceE OKGIIK_12700 0.36 -1.6 2,734,033 + aceE OKGIIK_12700 0.38 -0.5 2,734,033 + aceE OKGIIK_12700 0.38 -2.0 2,734,036 + aceE OKGIIK_12700 0.38 -2.1 2,734,036 + aceE OKGIIK_12700 0.38 +1.1 2,734,036 + aceE OKGIIK_12700 0.38 +0.8 2,734,036 + aceE OKGIIK_12700 0.38 -0.8 2,734,037 - aceE OKGIIK_12700 0.38 +1.2 2,734,037 - aceE OKGIIK_12700 0.38 -3.0 2,734,037 - aceE OKGIIK_12700 0.38 -1.1 2,734,037 - aceE OKGIIK_12700 0.38 -0.8 2,734,037 - aceE OKGIIK_12700 0.38 -1.1 2,734,066 + aceE OKGIIK_12700 0.39 -1.7 2,734,067 - aceE OKGIIK_12700 0.39 +0.3 2,734,087 + aceE OKGIIK_12700 0.40 +0.2 2,734,087 + aceE OKGIIK_12700 0.40 -1.5 2,734,088 - aceE OKGIIK_12700 0.40 -0.8 2,734,088 - aceE OKGIIK_12700 0.40 +0.2 2,734,354 + aceE OKGIIK_12700 0.50 -1.7 2,734,354 + aceE OKGIIK_12700 0.50 -2.4 2,734,354 + aceE OKGIIK_12700 0.50 -0.3 2,734,354 + aceE OKGIIK_12700 0.50 -1.1 2,734,354 + aceE OKGIIK_12700 0.50 +0.2 2,734,354 + aceE OKGIIK_12700 0.50 +1.5 2,734,354 + aceE OKGIIK_12700 0.50 -0.5 2,734,355 - aceE OKGIIK_12700 0.50 -2.0 2,734,355 - aceE OKGIIK_12700 0.50 +0.4 2,734,355 - aceE OKGIIK_12700 0.50 +0.2 2,734,355 - aceE OKGIIK_12700 0.50 -1.4 2,734,355 - aceE OKGIIK_12700 0.50 -2.1 2,734,387 + aceE OKGIIK_12700 0.51 -0.2 2,734,387 + aceE OKGIIK_12700 0.51 +0.2 2,734,387 + aceE OKGIIK_12700 0.51 +0.2 2,734,388 - aceE OKGIIK_12700 0.51 +0.0 2,734,598 - aceE OKGIIK_12700 0.59 -1.1 2,734,711 + aceE OKGIIK_12700 0.63 -1.3 2,734,742 - aceE OKGIIK_12700 0.64 -0.2 2,734,817 - aceE OKGIIK_12700 0.67 -0.5 2,734,863 + aceE OKGIIK_12700 0.68 -0.9 2,735,077 + aceE OKGIIK_12700 0.76 -0.5 2,735,176 + aceE OKGIIK_12700 0.80 -1.3 2,735,269 + aceE OKGIIK_12700 0.83 -0.1 2,735,270 - aceE OKGIIK_12700 0.83 -1.5 2,735,270 - aceE OKGIIK_12700 0.83 -0.5 2,735,362 + aceE OKGIIK_12700 0.87 -0.7 2,735,362 + aceE OKGIIK_12700 0.87 -1.1 2,735,362 + aceE OKGIIK_12700 0.87 -2.8 2,735,362 + aceE OKGIIK_12700 0.87 -2.1 2,735,363 - aceE OKGIIK_12700 0.87 -1.2 2,735,536 + -0.8 2,735,537 - -1.5 2,735,537 - -1.7 2,735,809 + -0.0 2,736,099 + -0.5 2,736,295 + pta OKGIIK_12705 0.16 +0.2 2,736,435 + pta OKGIIK_12705 0.22 -1.1 2,736,436 - pta OKGIIK_12705 0.22 -0.4 2,736,541 - pta OKGIIK_12705 0.27 -0.5 2,736,678 + pta OKGIIK_12705 0.33 -1.3
Or see this region's nucleotide sequence