Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_12070

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKGIIK_12065 and OKGIIK_12070 are separated by 59 nucleotidesOKGIIK_12070 and OKGIIK_12075 are separated by 78 nucleotides OKGIIK_12065: OKGIIK_12065 - Penicillin-binding protein 1A, at 2,598,660 to 2,601,188 _12065 OKGIIK_12070: OKGIIK_12070 - hypothetical protein, at 2,601,248 to 2,601,919 _12070 OKGIIK_12075: OKGIIK_12075 - citrate synthase, at 2,601,998 to 2,603,293 _12075 Position (kb) 2601 2602Strain fitness (log2 ratio) -2 -1 0 1 2at 2600.292 kb on + strand, within OKGIIK_12065at 2600.292 kb on + strand, within OKGIIK_12065at 2600.292 kb on + strand, within OKGIIK_12065at 2600.292 kb on + strand, within OKGIIK_12065at 2600.292 kb on + strand, within OKGIIK_12065at 2600.292 kb on + strand, within OKGIIK_12065at 2600.292 kb on + strand, within OKGIIK_12065at 2600.293 kb on - strand, within OKGIIK_12065at 2600.293 kb on - strand, within OKGIIK_12065at 2600.293 kb on - strand, within OKGIIK_12065at 2600.293 kb on - strand, within OKGIIK_12065at 2600.293 kb on - strand, within OKGIIK_12065at 2600.293 kb on - strand, within OKGIIK_12065at 2600.293 kb on - strand, within OKGIIK_12065at 2600.304 kb on + strand, within OKGIIK_12065at 2600.304 kb on + strand, within OKGIIK_12065at 2600.305 kb on - strand, within OKGIIK_12065at 2600.305 kb on - strand, within OKGIIK_12065at 2600.305 kb on - strand, within OKGIIK_12065at 2600.305 kb on - strand, within OKGIIK_12065at 2600.305 kb on - strand, within OKGIIK_12065at 2600.305 kb on - strand, within OKGIIK_12065at 2600.410 kb on + strand, within OKGIIK_12065at 2600.411 kb on - strand, within OKGIIK_12065at 2600.427 kb on + strand, within OKGIIK_12065at 2600.428 kb on - strand, within OKGIIK_12065at 2600.442 kb on + strand, within OKGIIK_12065at 2600.442 kb on + strand, within OKGIIK_12065at 2600.442 kb on + strand, within OKGIIK_12065at 2600.442 kb on + strand, within OKGIIK_12065at 2600.443 kb on - strand, within OKGIIK_12065at 2600.443 kb on - strand, within OKGIIK_12065at 2600.484 kb on + strand, within OKGIIK_12065at 2600.484 kb on + strand, within OKGIIK_12065at 2600.484 kb on + strand, within OKGIIK_12065at 2600.484 kb on + strand, within OKGIIK_12065at 2600.484 kb on + strand, within OKGIIK_12065at 2600.484 kb on + strand, within OKGIIK_12065at 2600.484 kb on + strand, within OKGIIK_12065at 2600.484 kb on + strand, within OKGIIK_12065at 2600.484 kb on + strand, within OKGIIK_12065at 2600.485 kb on - strand, within OKGIIK_12065at 2600.485 kb on - strand, within OKGIIK_12065at 2600.485 kb on - strand, within OKGIIK_12065at 2600.485 kb on - strand, within OKGIIK_12065at 2600.485 kb on - strand, within OKGIIK_12065at 2600.485 kb on - strand, within OKGIIK_12065at 2600.485 kb on - strand, within OKGIIK_12065at 2600.485 kb on - strand, within OKGIIK_12065at 2600.485 kb on - strand, within OKGIIK_12065at 2600.485 kb on - strand, within OKGIIK_12065at 2600.485 kb on - strand, within OKGIIK_12065at 2600.713 kb on + strand, within OKGIIK_12065at 2600.713 kb on + strand, within OKGIIK_12065at 2600.713 kb on + strand, within OKGIIK_12065at 2600.733 kb on + strand, within OKGIIK_12065at 2600.733 kb on + strand, within OKGIIK_12065at 2600.733 kb on + strand, within OKGIIK_12065at 2600.733 kb on + strand, within OKGIIK_12065at 2600.910 kb on + strand, within OKGIIK_12065at 2600.910 kb on + strand, within OKGIIK_12065at 2600.910 kb on + strand, within OKGIIK_12065at 2600.911 kb on - strand, within OKGIIK_12065at 2600.970 kb on + strandat 2600.970 kb on + strandat 2600.970 kb on + strandat 2600.970 kb on + strandat 2600.970 kb on + strandat 2600.970 kb on + strandat 2600.971 kb on - strandat 2600.971 kb on - strandat 2600.971 kb on - strandat 2600.971 kb on - strandat 2601.032 kb on + strandat 2601.033 kb on - strandat 2601.033 kb on - strandat 2601.033 kb on - strandat 2601.033 kb on - strandat 2601.033 kb on - strandat 2601.037 kb on + strandat 2601.037 kb on + strandat 2601.037 kb on + strandat 2601.037 kb on + strandat 2601.038 kb on - strandat 2601.038 kb on - strandat 2601.174 kb on + strandat 2601.175 kb on - strandat 2601.175 kb on - strandat 2601.175 kb on - strandat 2601.175 kb on - strandat 2601.175 kb on - strandat 2601.247 kb on + strandat 2601.247 kb on + strandat 2601.247 kb on + strandat 2601.247 kb on + strandat 2601.247 kb on + strandat 2601.247 kb on + strandat 2601.247 kb on + strandat 2601.247 kb on + strandat 2601.248 kb on - strandat 2601.248 kb on - strandat 2601.248 kb on - strandat 2601.248 kb on - strandat 2601.248 kb on - strandat 2601.248 kb on - strandat 2601.248 kb on - strandat 2601.248 kb on - strandat 2601.248 kb on - strandat 2601.248 kb on - strandat 2601.248 kb on - strandat 2601.248 kb on - strandat 2601.617 kb on + strand, within OKGIIK_12070at 2601.617 kb on + strand, within OKGIIK_12070at 2601.617 kb on + strand, within OKGIIK_12070at 2601.617 kb on + strand, within OKGIIK_12070at 2601.617 kb on + strand, within OKGIIK_12070at 2601.617 kb on + strand, within OKGIIK_12070at 2601.617 kb on + strand, within OKGIIK_12070at 2601.617 kb on + strand, within OKGIIK_12070at 2601.617 kb on + strand, within OKGIIK_12070at 2601.618 kb on - strand, within OKGIIK_12070at 2601.618 kb on - strand, within OKGIIK_12070at 2601.618 kb on - strand, within OKGIIK_12070at 2601.618 kb on - strand, within OKGIIK_12070at 2601.647 kb on + strand, within OKGIIK_12070at 2601.647 kb on + strand, within OKGIIK_12070at 2601.647 kb on + strand, within OKGIIK_12070at 2601.647 kb on + strand, within OKGIIK_12070at 2601.647 kb on + strand, within OKGIIK_12070at 2601.647 kb on + strand, within OKGIIK_12070at 2601.647 kb on + strand, within OKGIIK_12070at 2601.647 kb on + strand, within OKGIIK_12070at 2601.647 kb on + strand, within OKGIIK_12070at 2601.648 kb on - strand, within OKGIIK_12070at 2601.648 kb on - strand, within OKGIIK_12070at 2601.648 kb on - strand, within OKGIIK_12070at 2601.648 kb on - strand, within OKGIIK_12070at 2601.698 kb on + strand, within OKGIIK_12070at 2602.176 kb on + strand, within OKGIIK_12075at 2602.191 kb on + strand, within OKGIIK_12075

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
remove
2,600,292 + OKGIIK_12065 0.65 -1.8
2,600,292 + OKGIIK_12065 0.65 -0.8
2,600,292 + OKGIIK_12065 0.65 -1.0
2,600,292 + OKGIIK_12065 0.65 -0.9
2,600,292 + OKGIIK_12065 0.65 -1.0
2,600,292 + OKGIIK_12065 0.65 -1.0
2,600,292 + OKGIIK_12065 0.65 -0.3
2,600,293 - OKGIIK_12065 0.65 -0.8
2,600,293 - OKGIIK_12065 0.65 -1.6
2,600,293 - OKGIIK_12065 0.65 -0.5
2,600,293 - OKGIIK_12065 0.65 -0.5
2,600,293 - OKGIIK_12065 0.65 -2.0
2,600,293 - OKGIIK_12065 0.65 -1.4
2,600,293 - OKGIIK_12065 0.65 -0.0
2,600,304 + OKGIIK_12065 0.65 -1.0
2,600,304 + OKGIIK_12065 0.65 +0.8
2,600,305 - OKGIIK_12065 0.65 -2.2
2,600,305 - OKGIIK_12065 0.65 -0.3
2,600,305 - OKGIIK_12065 0.65 -1.0
2,600,305 - OKGIIK_12065 0.65 -1.5
2,600,305 - OKGIIK_12065 0.65 -1.8
2,600,305 - OKGIIK_12065 0.65 -0.8
2,600,410 + OKGIIK_12065 0.69 -0.1
2,600,411 - OKGIIK_12065 0.69 +0.1
2,600,427 + OKGIIK_12065 0.70 +0.5
2,600,428 - OKGIIK_12065 0.70 +0.5
2,600,442 + OKGIIK_12065 0.70 +1.5
2,600,442 + OKGIIK_12065 0.70 -0.8
2,600,442 + OKGIIK_12065 0.70 -1.4
2,600,442 + OKGIIK_12065 0.70 -0.8
2,600,443 - OKGIIK_12065 0.71 -1.0
2,600,443 - OKGIIK_12065 0.71 -1.6
2,600,484 + OKGIIK_12065 0.72 -0.3
2,600,484 + OKGIIK_12065 0.72 -2.3
2,600,484 + OKGIIK_12065 0.72 -0.5
2,600,484 + OKGIIK_12065 0.72 +0.9
2,600,484 + OKGIIK_12065 0.72 +0.5
2,600,484 + OKGIIK_12065 0.72 -1.0
2,600,484 + OKGIIK_12065 0.72 -1.9
2,600,484 + OKGIIK_12065 0.72 -0.2
2,600,484 + OKGIIK_12065 0.72 -1.0
2,600,485 - OKGIIK_12065 0.72 -1.7
2,600,485 - OKGIIK_12065 0.72 -1.5
2,600,485 - OKGIIK_12065 0.72 -0.8
2,600,485 - OKGIIK_12065 0.72 -1.8
2,600,485 - OKGIIK_12065 0.72 -0.0
2,600,485 - OKGIIK_12065 0.72 -0.5
2,600,485 - OKGIIK_12065 0.72 -0.2
2,600,485 - OKGIIK_12065 0.72 -0.8
2,600,485 - OKGIIK_12065 0.72 -1.5
2,600,485 - OKGIIK_12065 0.72 +0.4
2,600,485 - OKGIIK_12065 0.72 +1.5
2,600,713 + OKGIIK_12065 0.81 -0.0
2,600,713 + OKGIIK_12065 0.81 -1.2
2,600,713 + OKGIIK_12065 0.81 -1.5
2,600,733 + OKGIIK_12065 0.82 -1.0
2,600,733 + OKGIIK_12065 0.82 +0.9
2,600,733 + OKGIIK_12065 0.82 -1.5
2,600,733 + OKGIIK_12065 0.82 -0.8
2,600,910 + OKGIIK_12065 0.89 -0.6
2,600,910 + OKGIIK_12065 0.89 -0.8
2,600,910 + OKGIIK_12065 0.89 -0.2
2,600,911 - OKGIIK_12065 0.89 +0.5
2,600,970 + -2.3
2,600,970 + -0.0
2,600,970 + -0.0
2,600,970 + -1.1
2,600,970 + +0.4
2,600,970 + -1.6
2,600,971 - -0.9
2,600,971 - -0.5
2,600,971 - +1.1
2,600,971 - +0.2
2,601,032 + -1.5
2,601,033 - -1.5
2,601,033 - -0.7
2,601,033 - -2.0
2,601,033 - -0.6
2,601,033 - -0.7
2,601,037 + -1.3
2,601,037 + -0.8
2,601,037 + -0.9
2,601,037 + -0.5
2,601,038 - -0.8
2,601,038 - -1.7
2,601,174 + +0.1
2,601,175 - +1.3
2,601,175 - +0.5
2,601,175 - -0.0
2,601,175 - -0.8
2,601,175 - +1.1
2,601,247 + -2.0
2,601,247 + +1.0
2,601,247 + -0.2
2,601,247 + -1.6
2,601,247 + -1.3
2,601,247 + -0.9
2,601,247 + +1.2
2,601,247 + +0.6
2,601,248 - +0.0
2,601,248 - +0.7
2,601,248 - +0.2
2,601,248 - -0.8
2,601,248 - -0.2
2,601,248 - +0.6
2,601,248 - -0.2
2,601,248 - +0.2
2,601,248 - -0.0
2,601,248 - +1.8
2,601,248 - -1.3
2,601,248 - +1.2
2,601,617 + OKGIIK_12070 0.55 +1.3
2,601,617 + OKGIIK_12070 0.55 -0.8
2,601,617 + OKGIIK_12070 0.55 -0.6
2,601,617 + OKGIIK_12070 0.55 -1.3
2,601,617 + OKGIIK_12070 0.55 -0.6
2,601,617 + OKGIIK_12070 0.55 -1.5
2,601,617 + OKGIIK_12070 0.55 +0.8
2,601,617 + OKGIIK_12070 0.55 -0.5
2,601,617 + OKGIIK_12070 0.55 +0.0
2,601,618 - OKGIIK_12070 0.55 -2.0
2,601,618 - OKGIIK_12070 0.55 +0.1
2,601,618 - OKGIIK_12070 0.55 +0.8
2,601,618 - OKGIIK_12070 0.55 -0.1
2,601,647 + OKGIIK_12070 0.59 +0.2
2,601,647 + OKGIIK_12070 0.59 -0.9
2,601,647 + OKGIIK_12070 0.59 +0.7
2,601,647 + OKGIIK_12070 0.59 +0.1
2,601,647 + OKGIIK_12070 0.59 -0.1
2,601,647 + OKGIIK_12070 0.59 -0.6
2,601,647 + OKGIIK_12070 0.59 -0.5
2,601,647 + OKGIIK_12070 0.59 +0.7
2,601,647 + OKGIIK_12070 0.59 +0.8
2,601,648 - OKGIIK_12070 0.60 -0.5
2,601,648 - OKGIIK_12070 0.60 -0.5
2,601,648 - OKGIIK_12070 0.60 -0.2
2,601,648 - OKGIIK_12070 0.60 +1.1
2,601,698 + OKGIIK_12070 0.67 +1.0
2,602,176 + OKGIIK_12075 0.14 -1.0
2,602,191 + OKGIIK_12075 0.15 -0.5

Or see this region's nucleotide sequence