Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_09590

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaB and rplI are separated by 243 nucleotidesrplI and rpsR are separated by 135 nucleotidesrpsR and rpsF are separated by 14 nucleotidesrpsF and iscA are separated by 183 nucleotides OKGIIK_09585: dnaB - replicative DNA helicase, at 2,075,346 to 2,076,740 dnaB OKGIIK_09590: rplI - 50S ribosomal protein L9, at 2,076,984 to 2,077,433 rplI OKGIIK_09595: rpsR - 30S ribosomal protein S18, at 2,077,569 to 2,077,799 rpsR OKGIIK_09600: rpsF - 30S ribosomal protein S6, at 2,077,814 to 2,078,242 rpsF OKGIIK_09605: iscA - iron-sulfur cluster assembly accessory protein, at 2,078,426 to 2,078,752 iscA Position (kb) 2076 2077 2078Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2076.766 kb on - strandat 2076.766 kb on - strandat 2076.766 kb on - strandat 2076.766 kb on - strandat 2076.766 kb on - strandat 2076.766 kb on - strandat 2076.766 kb on - strandat 2076.766 kb on - strandat 2076.766 kb on - strandat 2076.766 kb on - strandat 2076.766 kb on - strandat 2076.766 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.851 kb on - strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2076.985 kb on + strandat 2077.054 kb on + strand, within rplIat 2077.055 kb on - strand, within rplIat 2077.273 kb on + strand, within rplIat 2077.274 kb on - strand, within rplIat 2077.274 kb on - strand, within rplIat 2077.349 kb on - strand, within rplIat 2077.591 kb on + strandat 2077.592 kb on - strand, within rpsRat 2077.592 kb on - strand, within rpsRat 2077.592 kb on - strand, within rpsRat 2078.354 kb on - strandat 2078.354 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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2,076,766 - +0.6
2,076,766 - -0.7
2,076,766 - -1.2
2,076,766 - -1.5
2,076,766 - -0.9
2,076,766 - +1.8
2,076,766 - -0.1
2,076,766 - -1.9
2,076,766 - +1.4
2,076,766 - -0.0
2,076,766 - -0.1
2,076,766 - -0.4
2,076,851 - +0.4
2,076,851 - -1.0
2,076,851 - -1.4
2,076,851 - +0.9
2,076,851 - +0.4
2,076,851 - -1.0
2,076,851 - -0.2
2,076,851 - -0.5
2,076,851 - +1.4
2,076,851 - -0.7
2,076,851 - +2.4
2,076,851 - -0.4
2,076,851 - -0.3
2,076,851 - +0.3
2,076,851 - -1.2
2,076,851 - -0.4
2,076,851 - +1.9
2,076,985 + -1.2
2,076,985 + -0.2
2,076,985 + -1.2
2,076,985 + +0.6
2,076,985 + +2.6
2,076,985 + -0.7
2,076,985 + -0.0
2,076,985 + -1.2
2,076,985 + -0.4
2,076,985 + +0.3
2,076,985 + +1.3
2,076,985 + -0.7
2,076,985 + +0.5
2,076,985 + +0.5
2,076,985 + -1.4
2,076,985 + +0.3
2,076,985 + -1.7
2,076,985 + -1.2
2,076,985 + -0.4
2,076,985 + -0.7
2,077,054 + rplI OKGIIK_09590 0.16 -0.6
2,077,055 - rplI OKGIIK_09590 0.16 -3.1
2,077,273 + rplI OKGIIK_09590 0.64 +0.2
2,077,274 - rplI OKGIIK_09590 0.64 -0.7
2,077,274 - rplI OKGIIK_09590 0.64 -0.6
2,077,349 - rplI OKGIIK_09590 0.81 -2.5
2,077,591 + -0.7
2,077,592 - rpsR OKGIIK_09595 0.10 -1.4
2,077,592 - rpsR OKGIIK_09595 0.10 -1.2
2,077,592 - rpsR OKGIIK_09595 0.10 -0.7
2,078,354 - +0.4
2,078,354 - -0.3

Or see this region's nucleotide sequence