Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08940

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_08925 and OKGIIK_08930 overlap by 4 nucleotidesOKGIIK_08930 and OKGIIK_08935 overlap by 8 nucleotidesOKGIIK_08935 and OKGIIK_08940 overlap by 4 nucleotidesOKGIIK_08940 and OKGIIK_08945 are separated by 2 nucleotides OKGIIK_08920: OKGIIK_08920 - hypothetical protein, at 1,919,754 to 1,919,972 _08920 OKGIIK_08925: OKGIIK_08925 - hypothetical protein, at 1,919,965 to 1,920,363 _08925 OKGIIK_08930: OKGIIK_08930 - hypothetical protein, at 1,920,360 to 1,920,629 _08930 OKGIIK_08935: OKGIIK_08935 - hypothetical protein, at 1,920,622 to 1,920,969 _08935 OKGIIK_08940: OKGIIK_08940 - DUF4224 domain-containing protein, at 1,920,966 to 1,921,169 _08940 OKGIIK_08945: OKGIIK_08945 - Integrase, at 1,921,172 to 1,922,200 _08945 Position (kb) 1920 1921 1922Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1919.974 kb on + strandat 1919.974 kb on + strandat 1919.974 kb on + strandat 1919.974 kb on + strandat 1919.974 kb on + strandat 1919.974 kb on + strandat 1919.975 kb on - strandat 1919.975 kb on - strandat 1919.998 kb on - strandat 1920.041 kb on + strand, within OKGIIK_08925at 1920.041 kb on + strand, within OKGIIK_08925at 1920.041 kb on + strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.042 kb on - strand, within OKGIIK_08925at 1920.099 kb on + strand, within OKGIIK_08925at 1920.099 kb on + strand, within OKGIIK_08925at 1920.100 kb on - strand, within OKGIIK_08925at 1920.100 kb on - strand, within OKGIIK_08925at 1920.100 kb on - strand, within OKGIIK_08925at 1920.126 kb on + strand, within OKGIIK_08925at 1920.127 kb on - strand, within OKGIIK_08925at 1920.143 kb on + strand, within OKGIIK_08925at 1920.143 kb on + strand, within OKGIIK_08925at 1920.143 kb on + strand, within OKGIIK_08925at 1920.143 kb on + strand, within OKGIIK_08925at 1920.143 kb on + strand, within OKGIIK_08925at 1920.143 kb on + strand, within OKGIIK_08925at 1920.144 kb on - strand, within OKGIIK_08925at 1920.144 kb on - strand, within OKGIIK_08925at 1920.148 kb on + strand, within OKGIIK_08925at 1920.149 kb on - strand, within OKGIIK_08925at 1920.149 kb on - strand, within OKGIIK_08925at 1920.149 kb on - strand, within OKGIIK_08925at 1920.171 kb on + strand, within OKGIIK_08925at 1920.171 kb on + strand, within OKGIIK_08925at 1920.171 kb on + strand, within OKGIIK_08925at 1920.171 kb on + strand, within OKGIIK_08925at 1920.430 kb on - strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.454 kb on + strand, within OKGIIK_08930at 1920.455 kb on - strand, within OKGIIK_08930at 1920.455 kb on - strand, within OKGIIK_08930at 1920.571 kb on + strand, within OKGIIK_08930at 1920.571 kb on + strand, within OKGIIK_08930at 1920.572 kb on - strand, within OKGIIK_08930at 1920.572 kb on - strand, within OKGIIK_08930at 1920.628 kb on - strandat 1920.854 kb on + strand, within OKGIIK_08935at 1920.854 kb on + strand, within OKGIIK_08935at 1920.854 kb on + strand, within OKGIIK_08935at 1920.855 kb on - strand, within OKGIIK_08935at 1920.855 kb on - strand, within OKGIIK_08935at 1920.855 kb on - strand, within OKGIIK_08935at 1920.855 kb on - strand, within OKGIIK_08935at 1920.858 kb on + strand, within OKGIIK_08935at 1920.946 kb on + strandat 1920.973 kb on + strandat 1921.065 kb on + strand, within OKGIIK_08940at 1921.065 kb on + strand, within OKGIIK_08940at 1921.065 kb on + strand, within OKGIIK_08940at 1921.066 kb on - strand, within OKGIIK_08940at 1921.247 kb on + strandat 1921.247 kb on + strandat 1921.247 kb on + strandat 1921.247 kb on + strandat 1921.247 kb on + strandat 1921.248 kb on - strandat 1921.248 kb on - strandat 1921.248 kb on - strandat 1921.248 kb on - strandat 1921.248 kb on - strandat 1921.248 kb on - strandat 1921.248 kb on - strandat 1921.250 kb on + strandat 1921.250 kb on + strandat 1921.251 kb on - strandat 1921.251 kb on - strandat 1921.253 kb on + strandat 1921.253 kb on + strandat 1921.253 kb on + strandat 1921.253 kb on + strandat 1921.254 kb on - strandat 1921.254 kb on - strandat 1921.254 kb on - strandat 1921.301 kb on + strand, within OKGIIK_08945at 1921.302 kb on - strand, within OKGIIK_08945at 1921.395 kb on - strand, within OKGIIK_08945at 1921.529 kb on + strand, within OKGIIK_08945at 1921.530 kb on - strand, within OKGIIK_08945at 1921.530 kb on - strand, within OKGIIK_08945at 1921.530 kb on - strand, within OKGIIK_08945at 1921.533 kb on + strand, within OKGIIK_08945at 1921.533 kb on + strand, within OKGIIK_08945at 1921.534 kb on - strand, within OKGIIK_08945at 1921.534 kb on - strand, within OKGIIK_08945at 1921.534 kb on - strand, within OKGIIK_08945at 1921.622 kb on + strand, within OKGIIK_08945at 1921.622 kb on + strand, within OKGIIK_08945at 1921.622 kb on + strand, within OKGIIK_08945at 1921.623 kb on - strand, within OKGIIK_08945at 1921.623 kb on - strand, within OKGIIK_08945at 1921.623 kb on - strand, within OKGIIK_08945at 1921.685 kb on + strand, within OKGIIK_08945at 1921.685 kb on + strand, within OKGIIK_08945at 1921.685 kb on + strand, within OKGIIK_08945at 1921.685 kb on + strand, within OKGIIK_08945at 1921.686 kb on - strand, within OKGIIK_08945at 1921.686 kb on - strand, within OKGIIK_08945at 1921.686 kb on - strand, within OKGIIK_08945at 1921.760 kb on + strand, within OKGIIK_08945at 1921.760 kb on + strand, within OKGIIK_08945at 1921.760 kb on + strand, within OKGIIK_08945at 1921.761 kb on - strand, within OKGIIK_08945at 1921.761 kb on - strand, within OKGIIK_08945at 1921.786 kb on + strand, within OKGIIK_08945at 1921.925 kb on + strand, within OKGIIK_08945at 1921.925 kb on + strand, within OKGIIK_08945at 1921.926 kb on - strand, within OKGIIK_08945at 1921.926 kb on - strand, within OKGIIK_08945at 1921.979 kb on + strand, within OKGIIK_08945at 1921.979 kb on + strand, within OKGIIK_08945at 1921.979 kb on + strand, within OKGIIK_08945at 1921.979 kb on + strand, within OKGIIK_08945at 1921.979 kb on + strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.990 kb on - strand, within OKGIIK_08945at 1922.156 kb on + strandat 1922.156 kb on + strandat 1922.156 kb on + strandat 1922.157 kb on - strandat 1922.157 kb on - strandat 1922.157 kb on - strandat 1922.157 kb on - strandat 1922.157 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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1,919,974 + -0.4
1,919,974 + +1.0
1,919,974 + +0.1
1,919,974 + -1.2
1,919,974 + -0.0
1,919,974 + -1.7
1,919,975 - -0.2
1,919,975 - +0.6
1,919,998 - -0.7
1,920,041 + OKGIIK_08925 0.19 -0.0
1,920,041 + OKGIIK_08925 0.19 -0.6
1,920,041 + OKGIIK_08925 0.19 -0.4
1,920,042 - OKGIIK_08925 0.19 -0.4
1,920,042 - OKGIIK_08925 0.19 -0.9
1,920,042 - OKGIIK_08925 0.19 -1.2
1,920,042 - OKGIIK_08925 0.19 +0.6
1,920,042 - OKGIIK_08925 0.19 +0.8
1,920,042 - OKGIIK_08925 0.19 -1.7
1,920,042 - OKGIIK_08925 0.19 -1.3
1,920,042 - OKGIIK_08925 0.19 -0.6
1,920,042 - OKGIIK_08925 0.19 -1.1
1,920,099 + OKGIIK_08925 0.34 -0.7
1,920,099 + OKGIIK_08925 0.34 -1.7
1,920,100 - OKGIIK_08925 0.34 -0.2
1,920,100 - OKGIIK_08925 0.34 -1.0
1,920,100 - OKGIIK_08925 0.34 -0.5
1,920,126 + OKGIIK_08925 0.40 +0.8
1,920,127 - OKGIIK_08925 0.41 +0.3
1,920,143 + OKGIIK_08925 0.45 -1.5
1,920,143 + OKGIIK_08925 0.45 +1.0
1,920,143 + OKGIIK_08925 0.45 -2.5
1,920,143 + OKGIIK_08925 0.45 +0.3
1,920,143 + OKGIIK_08925 0.45 -1.2
1,920,143 + OKGIIK_08925 0.45 +0.9
1,920,144 - OKGIIK_08925 0.45 +1.1
1,920,144 - OKGIIK_08925 0.45 -1.4
1,920,148 + OKGIIK_08925 0.46 -2.1
1,920,149 - OKGIIK_08925 0.46 -1.2
1,920,149 - OKGIIK_08925 0.46 -0.0
1,920,149 - OKGIIK_08925 0.46 +0.4
1,920,171 + OKGIIK_08925 0.52 -1.2
1,920,171 + OKGIIK_08925 0.52 -0.0
1,920,171 + OKGIIK_08925 0.52 -0.1
1,920,171 + OKGIIK_08925 0.52 -0.7
1,920,430 - OKGIIK_08930 0.26 -1.0
1,920,454 + OKGIIK_08930 0.35 +1.6
1,920,454 + OKGIIK_08930 0.35 -2.6
1,920,454 + OKGIIK_08930 0.35 +0.1
1,920,454 + OKGIIK_08930 0.35 +1.9
1,920,454 + OKGIIK_08930 0.35 -0.4
1,920,454 + OKGIIK_08930 0.35 +0.2
1,920,454 + OKGIIK_08930 0.35 +0.3
1,920,454 + OKGIIK_08930 0.35 +1.2
1,920,454 + OKGIIK_08930 0.35 -0.5
1,920,454 + OKGIIK_08930 0.35 +1.6
1,920,455 - OKGIIK_08930 0.35 +0.8
1,920,455 - OKGIIK_08930 0.35 -0.7
1,920,571 + OKGIIK_08930 0.78 -0.9
1,920,571 + OKGIIK_08930 0.78 -0.7
1,920,572 - OKGIIK_08930 0.79 -0.9
1,920,572 - OKGIIK_08930 0.79 -0.3
1,920,628 - +0.9
1,920,854 + OKGIIK_08935 0.67 +0.6
1,920,854 + OKGIIK_08935 0.67 -0.0
1,920,854 + OKGIIK_08935 0.67 -2.4
1,920,855 - OKGIIK_08935 0.67 -1.2
1,920,855 - OKGIIK_08935 0.67 +0.5
1,920,855 - OKGIIK_08935 0.67 -1.1
1,920,855 - OKGIIK_08935 0.67 -1.2
1,920,858 + OKGIIK_08935 0.68 -0.4
1,920,946 + +0.6
1,920,973 + -0.4
1,921,065 + OKGIIK_08940 0.49 +1.0
1,921,065 + OKGIIK_08940 0.49 -1.7
1,921,065 + OKGIIK_08940 0.49 -1.0
1,921,066 - OKGIIK_08940 0.49 -2.2
1,921,247 + -0.8
1,921,247 + -1.3
1,921,247 + +0.3
1,921,247 + +0.1
1,921,247 + -1.2
1,921,248 - +0.3
1,921,248 - -2.4
1,921,248 - -1.1
1,921,248 - -2.2
1,921,248 - -0.9
1,921,248 - -0.7
1,921,248 - +0.7
1,921,250 + +1.0
1,921,250 + -1.2
1,921,251 - -1.7
1,921,251 - +0.4
1,921,253 + +0.8
1,921,253 + -2.3
1,921,253 + -0.1
1,921,253 + -0.4
1,921,254 - -0.8
1,921,254 - +0.2
1,921,254 - +1.0
1,921,301 + OKGIIK_08945 0.13 -0.4
1,921,302 - OKGIIK_08945 0.13 -0.7
1,921,395 - OKGIIK_08945 0.22 +0.5
1,921,529 + OKGIIK_08945 0.35 -0.5
1,921,530 - OKGIIK_08945 0.35 -0.6
1,921,530 - OKGIIK_08945 0.35 +0.8
1,921,530 - OKGIIK_08945 0.35 -2.8
1,921,533 + OKGIIK_08945 0.35 -1.5
1,921,533 + OKGIIK_08945 0.35 -0.6
1,921,534 - OKGIIK_08945 0.35 +0.8
1,921,534 - OKGIIK_08945 0.35 +0.3
1,921,534 - OKGIIK_08945 0.35 -0.3
1,921,622 + OKGIIK_08945 0.44 -0.6
1,921,622 + OKGIIK_08945 0.44 -1.4
1,921,622 + OKGIIK_08945 0.44 -0.2
1,921,623 - OKGIIK_08945 0.44 +0.2
1,921,623 - OKGIIK_08945 0.44 -0.0
1,921,623 - OKGIIK_08945 0.44 -1.7
1,921,685 + OKGIIK_08945 0.50 -0.5
1,921,685 + OKGIIK_08945 0.50 +0.8
1,921,685 + OKGIIK_08945 0.50 +1.6
1,921,685 + OKGIIK_08945 0.50 -0.7
1,921,686 - OKGIIK_08945 0.50 -0.0
1,921,686 - OKGIIK_08945 0.50 +0.2
1,921,686 - OKGIIK_08945 0.50 -1.1
1,921,760 + OKGIIK_08945 0.57 -0.4
1,921,760 + OKGIIK_08945 0.57 +0.4
1,921,760 + OKGIIK_08945 0.57 +0.8
1,921,761 - OKGIIK_08945 0.57 +1.2
1,921,761 - OKGIIK_08945 0.57 +0.3
1,921,786 + OKGIIK_08945 0.60 -1.2
1,921,925 + OKGIIK_08945 0.73 -0.9
1,921,925 + OKGIIK_08945 0.73 -2.2
1,921,926 - OKGIIK_08945 0.73 +1.4
1,921,926 - OKGIIK_08945 0.73 +0.5
1,921,979 + OKGIIK_08945 0.78 +0.2
1,921,979 + OKGIIK_08945 0.78 -0.0
1,921,979 + OKGIIK_08945 0.78 +2.2
1,921,979 + OKGIIK_08945 0.78 +0.3
1,921,979 + OKGIIK_08945 0.78 -0.3
1,921,980 - OKGIIK_08945 0.79 -0.4
1,921,980 - OKGIIK_08945 0.79 +1.0
1,921,980 - OKGIIK_08945 0.79 +0.6
1,921,980 - OKGIIK_08945 0.79 +2.2
1,921,980 - OKGIIK_08945 0.79 -1.0
1,921,980 - OKGIIK_08945 0.79 +0.3
1,921,980 - OKGIIK_08945 0.79 -1.0
1,921,980 - OKGIIK_08945 0.79 -0.6
1,921,980 - OKGIIK_08945 0.79 -1.4
1,921,980 - OKGIIK_08945 0.79 -1.0
1,921,980 - OKGIIK_08945 0.79 -0.0
1,921,980 - OKGIIK_08945 0.79 +0.4
1,921,980 - OKGIIK_08945 0.79 -1.1
1,921,980 - OKGIIK_08945 0.79 +0.3
1,921,990 - OKGIIK_08945 0.79 -1.0
1,922,156 + -0.9
1,922,156 + -1.6
1,922,156 + -1.6
1,922,157 - -1.0
1,922,157 - -0.7
1,922,157 - +0.4
1,922,157 - -0.3
1,922,157 - +1.0

Or see this region's nucleotide sequence