Strain Fitness in Rhodanobacter sp. FW510-T8

Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08100

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Nickel (II) chloride 424 uM
					remove
1,782,237	+				+0.3
1,782,237	+				+0.1
1,782,237	+				-0.4
1,782,237	+				+0.6
1,782,305	+				-0.4
1,782,604	+				+0.6
1,782,604	+				+0.0
1,782,605	-				-1.4
1,782,605	-				+1.1
1,782,610	+				+0.7
1,782,610	+				-0.7
1,782,610	+				-0.7
1,782,610	+				+0.2
1,782,610	+				-0.6
1,782,610	+				-1.2
1,782,610	+				+0.0
1,782,610	+				+0.3
1,782,610	+				-0.6
1,782,610	+				-1.4
1,782,610	+				+0.5
1,782,610	+				-0.7
1,782,610	+				+0.4
1,782,610	+				+0.4
1,782,610	+				+0.1
1,782,610	+				-0.0
1,782,610	+				+0.6
1,782,610	+				+1.2
1,782,610	+				-2.0
1,782,610	+				-0.6
1,782,610	+				-2.4
1,782,610	+				+0.9
1,782,610	+				+0.4
1,782,610	+				+0.9
1,782,610	+				+0.6
1,782,611	-		OKGIIK_08095	0.10	+0.6
1,782,611	-		OKGIIK_08095	0.10	-1.9
1,782,611	-		OKGIIK_08095	0.10	-1.0
1,782,611	-		OKGIIK_08095	0.10	-0.7
1,782,611	-		OKGIIK_08095	0.10	-2.1
1,782,611	-		OKGIIK_08095	0.10	-1.7
1,782,611	-		OKGIIK_08095	0.10	+0.9
1,782,611	-		OKGIIK_08095	0.10	+0.8
1,782,611	-		OKGIIK_08095	0.10	-0.0
1,782,611	-		OKGIIK_08095	0.10	-0.3
1,782,611	-		OKGIIK_08095	0.10	-2.8
1,782,611	-		OKGIIK_08095	0.10	+0.0
1,782,611	-		OKGIIK_08095	0.10	-0.3
1,782,611	-		OKGIIK_08095	0.10	-0.2
1,782,611	-		OKGIIK_08095	0.10	+0.9
1,782,611	-		OKGIIK_08095	0.10	-0.6
1,782,611	-		OKGIIK_08095	0.10	-2.0
1,782,611	-		OKGIIK_08095	0.10	-0.4
1,782,611	-		OKGIIK_08095	0.10	-0.0
1,782,611	-		OKGIIK_08095	0.10	-3.8
1,782,611	-		OKGIIK_08095	0.10	-0.7
1,782,611	-		OKGIIK_08095	0.10	+0.0
1,782,611	-		OKGIIK_08095	0.10	-1.4
1,782,611	-		OKGIIK_08095	0.10	+0.6
1,782,614	+		OKGIIK_08095	0.11	+0.8
1,782,614	+		OKGIIK_08095	0.11	-0.3
1,782,614	+		OKGIIK_08095	0.11	-0.2
1,782,614	+		OKGIIK_08095	0.11	+1.2
1,782,614	+		OKGIIK_08095	0.11	-1.6
1,782,614	+		OKGIIK_08095	0.11	-0.4
1,782,614	+		OKGIIK_08095	0.11	-2.6
1,782,614	+		OKGIIK_08095	0.11	-1.0
1,782,614	+		OKGIIK_08095	0.11	-0.6
1,782,614	+		OKGIIK_08095	0.11	-0.5
1,782,615	-		OKGIIK_08095	0.11	-1.0
1,782,615	-		OKGIIK_08095	0.11	-1.4
1,782,615	-		OKGIIK_08095	0.11	-3.1
1,782,615	-		OKGIIK_08095	0.11	+0.0
1,782,723	+		OKGIIK_08095	0.40	+0.6
1,782,724	-		OKGIIK_08095	0.41	-0.4
1,782,724	-		OKGIIK_08095	0.41	-1.1
1,782,889	+		OKGIIK_08095	0.85	+0.5
1,782,889	+		OKGIIK_08095	0.85	-0.4
1,782,889	+		OKGIIK_08095	0.85	-0.9
1,782,889	+		OKGIIK_08095	0.85	-0.3
1,782,889	+		OKGIIK_08095	0.85	-2.0
1,782,889	+		OKGIIK_08095	0.85	-0.7
1,782,889	+		OKGIIK_08095	0.85	+0.0
1,782,889	+		OKGIIK_08095	0.85	-0.1
1,782,890	-		OKGIIK_08095	0.86	-2.0
1,782,890	-		OKGIIK_08095	0.86	+1.6
1,782,890	-		OKGIIK_08095	0.86	+0.4
1,782,890	-		OKGIIK_08095	0.86	+0.6
1,782,890	-		OKGIIK_08095	0.86	-0.2
1,782,890	-		OKGIIK_08095	0.86	-0.2
1,782,890	-		OKGIIK_08095	0.86	-0.2
1,782,890	-		OKGIIK_08095	0.86	-1.1
1,782,993	+				-0.2
1,782,993	+				-0.0
1,782,993	+				-1.4
1,782,993	+				-0.5
1,782,993	+				-0.2
1,782,994	-				-1.3
1,782,994	-				+0.4
1,783,008	+				-1.0
1,783,008	+				-1.9
1,783,008	+				-1.4
1,783,008	+				+1.2
1,783,008	+				-0.4
1,783,008	+				+0.7
1,783,008	+				-1.9
1,783,008	+				-0.5
1,783,009	-				-0.2
1,783,009	-				+0.3
1,783,009	-				+0.4
1,783,009	-				-1.9
1,783,009	-				+1.0
1,783,009	-				-0.6
1,783,024	-				-2.6
1,783,024	-				-0.1
1,783,171	-		OKGIIK_08100	0.16	-2.0
1,783,242	+		OKGIIK_08100	0.22	-0.3
1,783,242	+		OKGIIK_08100	0.22	-2.0
1,783,242	+		OKGIIK_08100	0.22	-0.4
1,783,242	+		OKGIIK_08100	0.22	+0.6
1,783,242	+		OKGIIK_08100	0.22	-0.4
1,783,242	+		OKGIIK_08100	0.22	+0.0
1,783,242	+		OKGIIK_08100	0.22	+0.6
1,783,243	-		OKGIIK_08100	0.22	-2.0
1,783,243	-		OKGIIK_08100	0.22	+0.9
1,783,243	-		OKGIIK_08100	0.22	-2.5
1,783,243	-		OKGIIK_08100	0.22	+0.3
1,783,471	+		OKGIIK_08100	0.44	-0.7
1,783,472	-		OKGIIK_08100	0.44	-0.7
1,783,755	+		OKGIIK_08100	0.71	-1.7
1,783,756	-		OKGIIK_08100	0.71	+0.6
1,783,824	+		OKGIIK_08100	0.78	+0.6
1,783,847	+		OKGIIK_08100	0.80	-1.4
1,783,847	+		OKGIIK_08100	0.80	-0.5
1,783,847	+		OKGIIK_08100	0.80	-0.2
1,783,851	+		OKGIIK_08100	0.80	-2.6
1,783,851	+		OKGIIK_08100	0.80	-1.4
1,783,851	+		OKGIIK_08100	0.80	-0.4
1,783,852	-		OKGIIK_08100	0.80	-0.7
1,783,852	-		OKGIIK_08100	0.80	-1.0
1,783,852	-		OKGIIK_08100	0.80	-0.4
1,783,852	-		OKGIIK_08100	0.80	-0.6
1,783,852	-		OKGIIK_08100	0.80	-1.3
1,783,852	-		OKGIIK_08100	0.80	-1.4
1,783,852	-		OKGIIK_08100	0.80	-1.1
1,783,873	+		OKGIIK_08100	0.82	-1.6
1,783,873	+		OKGIIK_08100	0.82	+0.3
1,783,874	-		OKGIIK_08100	0.82	-1.3
1,783,914	+		OKGIIK_08100	0.86	-1.9
1,783,915	-		OKGIIK_08100	0.86	+2.6
1,784,013	+				-1.9
1,784,014	-				+0.0
1,784,014	-				-0.7
1,784,035	+				+1.9
1,784,035	+				-0.2
1,784,036	-				-0.5
1,784,036	-				+2.9
1,784,036	-				-1.6
1,784,036	-				-0.2
1,784,036	-				-1.1
1,784,036	-				+1.4
1,784,118	+				+2.1
1,784,119	-				+1.2
1,784,159	+	ygaA	OKGIIK_08105	0.12	-1.1
1,784,161	+	ygaA	OKGIIK_08105	0.12	+0.3
1,784,161	+	ygaA	OKGIIK_08105	0.12	-1.3
1,784,161	+	ygaA	OKGIIK_08105	0.12	+1.0
1,784,161	+	ygaA	OKGIIK_08105	0.12	-0.8
1,784,161	+	ygaA	OKGIIK_08105	0.12	+0.6
1,784,161	+	ygaA	OKGIIK_08105	0.12	+0.5
1,784,161	+	ygaA	OKGIIK_08105	0.12	+0.3
1,784,161	+	ygaA	OKGIIK_08105	0.12	-1.0
1,784,161	+	ygaA	OKGIIK_08105	0.12	-0.5
1,784,161	+	ygaA	OKGIIK_08105	0.12	-0.4
1,784,161	+	ygaA	OKGIIK_08105	0.12	+0.0
1,784,161	+	ygaA	OKGIIK_08105	0.12	+0.0
1,784,161	+	ygaA	OKGIIK_08105	0.12	+1.3
1,784,161	+	ygaA	OKGIIK_08105	0.12	+0.0
1,784,161	+	ygaA	OKGIIK_08105	0.12	-1.4
1,784,161	+	ygaA	OKGIIK_08105	0.12	-1.4
1,784,161	+	ygaA	OKGIIK_08105	0.12	-0.4
1,784,161	+	ygaA	OKGIIK_08105	0.12	-1.2
1,784,161	+	ygaA	OKGIIK_08105	0.12	-0.7
1,784,161	+	ygaA	OKGIIK_08105	0.12	+1.6
1,784,161	+	ygaA	OKGIIK_08105	0.12	+1.9
1,784,161	+	ygaA	OKGIIK_08105	0.12	+1.6
1,784,161	+	ygaA	OKGIIK_08105	0.12	-1.0
1,784,161	+	ygaA	OKGIIK_08105	0.12	+0.4
1,784,161	+	ygaA	OKGIIK_08105	0.12	-1.0
1,784,161	+	ygaA	OKGIIK_08105	0.12	+0.0
1,784,161	+	ygaA	OKGIIK_08105	0.12	+1.6
1,784,161	+	ygaA	OKGIIK_08105	0.12	-1.0
1,784,161	+	ygaA	OKGIIK_08105	0.12	-0.2
1,784,161	+	ygaA	OKGIIK_08105	0.12	-0.4
1,784,161	+	ygaA	OKGIIK_08105	0.12	-1.0
1,784,161	+	ygaA	OKGIIK_08105	0.12	+1.6
1,784,161	+	ygaA	OKGIIK_08105	0.12	-1.2
1,784,161	+	ygaA	OKGIIK_08105	0.12	+0.9
1,784,161	+	ygaA	OKGIIK_08105	0.12	+0.8
1,784,161	+	ygaA	OKGIIK_08105	0.12	+0.6
1,784,162	-	ygaA	OKGIIK_08105	0.12	-0.7
1,784,162	-	ygaA	OKGIIK_08105	0.12	-1.7
1,784,162	-	ygaA	OKGIIK_08105	0.12	-1.1
1,784,162	-	ygaA	OKGIIK_08105	0.12	-1.4
1,784,162	-	ygaA	OKGIIK_08105	0.12	-1.6
1,784,162	-	ygaA	OKGIIK_08105	0.12	-0.2
1,784,162	-	ygaA	OKGIIK_08105	0.12	-1.0
1,784,162	-	ygaA	OKGIIK_08105	0.12	+0.2
1,784,162	-	ygaA	OKGIIK_08105	0.12	-1.6
1,784,162	-	ygaA	OKGIIK_08105	0.12	-1.5
1,784,162	-	ygaA	OKGIIK_08105	0.12	-0.5
1,784,162	-	ygaA	OKGIIK_08105	0.12	-0.7
1,784,162	-	ygaA	OKGIIK_08105	0.12	+2.2
1,784,162	-	ygaA	OKGIIK_08105	0.12	-1.9
1,784,162	-	ygaA	OKGIIK_08105	0.12	+0.2
1,784,162	-	ygaA	OKGIIK_08105	0.12	+1.1
1,784,162	-	ygaA	OKGIIK_08105	0.12	-0.2
1,784,162	-	ygaA	OKGIIK_08105	0.12	-0.3
1,784,162	-	ygaA	OKGIIK_08105	0.12	-1.4
1,784,174	+	ygaA	OKGIIK_08105	0.14	+2.2
1,784,174	+	ygaA	OKGIIK_08105	0.14	+0.9
1,784,174	+	ygaA	OKGIIK_08105	0.14	-1.1
1,784,174	+	ygaA	OKGIIK_08105	0.14	-1.2
1,784,174	+	ygaA	OKGIIK_08105	0.14	-1.3
1,784,174	+	ygaA	OKGIIK_08105	0.14	+0.3
1,784,175	-	ygaA	OKGIIK_08105	0.14	-1.5
1,784,175	-	ygaA	OKGIIK_08105	0.14	-1.1
1,784,175	-	ygaA	OKGIIK_08105	0.14	-1.6
1,784,175	-	ygaA	OKGIIK_08105	0.14	-0.7
1,784,175	-	ygaA	OKGIIK_08105	0.14	-1.7
1,784,175	-	ygaA	OKGIIK_08105	0.14	-0.1
1,784,223	+	ygaA	OKGIIK_08105	0.22	-1.5
1,784,223	+	ygaA	OKGIIK_08105	0.22	+0.4
1,784,224	-	ygaA	OKGIIK_08105	0.22	-0.7
1,784,224	-	ygaA	OKGIIK_08105	0.22	+0.3
1,784,224	-	ygaA	OKGIIK_08105	0.22	-0.4
1,784,357	+	ygaA	OKGIIK_08105	0.44	+0.1
1,784,357	+	ygaA	OKGIIK_08105	0.44	+0.4
1,784,357	+	ygaA	OKGIIK_08105	0.44	+1.8
1,784,358	-	ygaA	OKGIIK_08105	0.44	-0.4
1,784,358	-	ygaA	OKGIIK_08105	0.44	+0.4
1,784,358	-	ygaA	OKGIIK_08105	0.44	+0.7
1,784,358	-	ygaA	OKGIIK_08105	0.44	+0.2
1,784,370	+	ygaA	OKGIIK_08105	0.46	-0.3
1,784,479	+	ygaA	OKGIIK_08105	0.64	+0.6
1,784,479	+	ygaA	OKGIIK_08105	0.64	+0.4
1,784,479	+	ygaA	OKGIIK_08105	0.64	+0.2
1,784,480	-	ygaA	OKGIIK_08105	0.64	+1.6
1,784,480	-	ygaA	OKGIIK_08105	0.64	-0.8
1,784,480	-	ygaA	OKGIIK_08105	0.64	-1.9
1,784,480	-	ygaA	OKGIIK_08105	0.64	+0.4
1,784,480	-	ygaA	OKGIIK_08105	0.64	-1.4
1,784,480	-	ygaA	OKGIIK_08105	0.64	+1.3
1,784,480	-	ygaA	OKGIIK_08105	0.64	-1.4
1,784,480	-	ygaA	OKGIIK_08105	0.64	-1.4
1,784,480	-	ygaA	OKGIIK_08105	0.64	-0.6
1,784,480	-	ygaA	OKGIIK_08105	0.64	+0.2
1,784,480	-	ygaA	OKGIIK_08105	0.64	+1.8
1,784,480	-	ygaA	OKGIIK_08105	0.64	+1.0
1,784,629	+	ygaA	OKGIIK_08105	0.89	-0.6
1,784,629	+	ygaA	OKGIIK_08105	0.89	-1.2
1,784,629	+	ygaA	OKGIIK_08105	0.89	-0.7
1,784,629	+	ygaA	OKGIIK_08105	0.89	-1.2
1,784,629	+	ygaA	OKGIIK_08105	0.89	-2.9
1,784,629	+	ygaA	OKGIIK_08105	0.89	-0.3
1,784,629	+	ygaA	OKGIIK_08105	0.89	+0.6
1,784,630	-	ygaA	OKGIIK_08105	0.89	+0.1
1,784,630	-	ygaA	OKGIIK_08105	0.89	-0.4
1,784,630	-	ygaA	OKGIIK_08105	0.89	+0.9
1,784,630	-	ygaA	OKGIIK_08105	0.89	+0.9
1,784,630	-	ygaA	OKGIIK_08105	0.89	-0.8
1,784,630	-	ygaA	OKGIIK_08105	0.89	-1.7
1,784,630	-	ygaA	OKGIIK_08105	0.89	+1.6
1,784,630	-	ygaA	OKGIIK_08105	0.89	+1.9
1,784,630	-	ygaA	OKGIIK_08105	0.89	+0.0
1,784,630	-	ygaA	OKGIIK_08105	0.89	-1.2
1,784,630	-	ygaA	OKGIIK_08105	0.89	+0.3
1,784,630	-	ygaA	OKGIIK_08105	0.89	-0.4
1,784,630	-	ygaA	OKGIIK_08105	0.89	-0.8
1,784,630	-	ygaA	OKGIIK_08105	0.89	-1.0
1,784,632	+	ygaA	OKGIIK_08105	0.89	-0.4
1,784,632	+	ygaA	OKGIIK_08105	0.89	-1.9
1,784,632	+	ygaA	OKGIIK_08105	0.89	-2.2
1,784,632	+	ygaA	OKGIIK_08105	0.89	-1.0
1,784,632	+	ygaA	OKGIIK_08105	0.89	+0.1
1,784,632	+	ygaA	OKGIIK_08105	0.89	-0.2
1,784,632	+	ygaA	OKGIIK_08105	0.89	-1.2
1,784,632	+	ygaA	OKGIIK_08105	0.89	-0.4
1,784,632	+	ygaA	OKGIIK_08105	0.89	-1.9
1,784,632	+	ygaA	OKGIIK_08105	0.89	-1.0
1,784,632	+	ygaA	OKGIIK_08105	0.89	-1.0
1,784,632	+	ygaA	OKGIIK_08105	0.89	-0.8
1,784,632	+	ygaA	OKGIIK_08105	0.89	+0.6
1,784,633	-	ygaA	OKGIIK_08105	0.89	+0.0
1,784,633	-	ygaA	OKGIIK_08105	0.89	-0.4
1,784,633	-	ygaA	OKGIIK_08105	0.89	+0.3
1,784,633	-	ygaA	OKGIIK_08105	0.89	-0.7
1,784,633	-	ygaA	OKGIIK_08105	0.89	-1.7
1,784,633	-	ygaA	OKGIIK_08105	0.89	-0.9
1,784,633	-	ygaA	OKGIIK_08105	0.89	+0.0
1,784,633	-	ygaA	OKGIIK_08105	0.89	+1.3
1,784,633	-	ygaA	OKGIIK_08105	0.89	-1.6
1,784,633	-	ygaA	OKGIIK_08105	0.89	-0.1
1,784,633	-	ygaA	OKGIIK_08105	0.89	-0.3
1,784,633	-	ygaA	OKGIIK_08105	0.89	+0.0
1,784,633	-	ygaA	OKGIIK_08105	0.89	+0.3
1,784,633	-	ygaA	OKGIIK_08105	0.89	-1.6
1,784,633	-	ygaA	OKGIIK_08105	0.89	+0.8
1,784,633	-	ygaA	OKGIIK_08105	0.89	+0.0
1,784,633	-	ygaA	OKGIIK_08105	0.89	+0.4
1,784,633	-	ygaA	OKGIIK_08105	0.89	-1.0
1,784,674	+				+0.3
1,784,674	+				+0.3
1,784,674	+				+0.1
1,784,675	-				-0.2
1,784,675	-				-1.6
1,784,675	-				+0.4
1,784,675	-				-0.3
1,784,675	-				-0.4
1,784,675	-				-0.2
1,784,941	-	pcm	OKGIIK_08110	0.36	-2.0

Or see this region's nucleotide sequence