Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08045

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntclpX and clpP are separated by 109 nucleotidesclpP and tig are separated by 38 nucleotidestig and Leu_trna are separated by 92 nucleotidesLeu_trna and Lys_trna are separated by 274 nucleotidesLys_trna and His_trna are separated by 20 nucleotidesHis_trna and Arg_trna are separated by 13 nucleotidesArg_trna and Pro_trna are separated by 24 nucleotidesPro_trna and Arg_trna are separated by 177 nucleotides OKGIIK_08035: clpX - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,774,925 to 1,776,217 clpX OKGIIK_08040: clpP - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 1,776,327 to 1,776,956 clpP OKGIIK_08045: tig - trigger factor, at 1,776,995 to 1,778,287 tig OKGIIK_08050: Leu_trna - tRNA-Leu, at 1,778,380 to 1,778,464 _trna OKGIIK_08055: Lys_trna - tRNA-Lys, at 1,778,739 to 1,778,814 _trna OKGIIK_08060: His_trna - tRNA-His, at 1,778,835 to 1,778,911 _trna OKGIIK_08065: Arg_trna - tRNA-Arg, at 1,778,925 to 1,779,001 _trna OKGIIK_08070: Pro_trna - tRNA-Pro, at 1,779,026 to 1,779,102 _trna OKGIIK_08075: Arg_trna - tRNA-Arg, at 1,779,280 to 1,779,356 _trna Position (kb) 1776 1777 1778 1779Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1776.236 kb on - strandat 1776.236 kb on - strandat 1776.236 kb on - strandat 1776.258 kb on + strandat 1776.259 kb on - strandat 1776.259 kb on - strandat 1776.259 kb on - strandat 1776.259 kb on - strandat 1776.259 kb on - strandat 1776.259 kb on - strandat 1776.259 kb on - strandat 1776.259 kb on - strandat 1776.259 kb on - strandat 1776.259 kb on - strandat 1776.259 kb on - strandat 1776.259 kb on - strandat 1776.259 kb on - strandat 1777.134 kb on + strand, within tigat 1777.135 kb on - strand, within tigat 1777.135 kb on - strand, within tigat 1777.135 kb on - strand, within tigat 1777.164 kb on + strand, within tigat 1777.164 kb on + strand, within tigat 1777.165 kb on - strand, within tigat 1777.785 kb on + strand, within tigat 1777.786 kb on - strand, within tigat 1777.786 kb on - strand, within tigat 1777.974 kb on + strand, within tigat 1777.974 kb on + strand, within tigat 1777.974 kb on + strand, within tigat 1778.300 kb on + strandat 1778.300 kb on + strandat 1778.300 kb on + strandat 1778.300 kb on + strandat 1778.301 kb on - strandat 1778.301 kb on - strandat 1778.301 kb on - strandat 1778.303 kb on + strandat 1778.303 kb on + strandat 1778.303 kb on + strandat 1778.303 kb on + strandat 1778.303 kb on + strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.304 kb on - strandat 1778.361 kb on + strandat 1778.361 kb on + strandat 1778.362 kb on - strandat 1778.362 kb on - strandat 1778.486 kb on - strandat 1778.486 kb on - strandat 1778.486 kb on - strandat 1778.486 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.490 kb on - strandat 1778.494 kb on - strandat 1778.494 kb on - strandat 1778.494 kb on - strandat 1778.494 kb on - strandat 1778.494 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.568 kb on - strandat 1778.584 kb on + strandat 1778.585 kb on - strandat 1778.587 kb on - strandat 1778.587 kb on - strandat 1778.587 kb on - strandat 1778.587 kb on - strandat 1778.605 kb on - strandat 1778.605 kb on - strandat 1778.605 kb on - strandat 1778.605 kb on - strandat 1778.605 kb on - strandat 1778.923 kb on - strandat 1779.275 kb on - strandat 1779.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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1,776,236 - +0.1
1,776,236 - -0.5
1,776,236 - +0.3
1,776,258 + -0.9
1,776,259 - +0.0
1,776,259 - -0.2
1,776,259 - -0.9
1,776,259 - +0.3
1,776,259 - +1.6
1,776,259 - +0.8
1,776,259 - -1.7
1,776,259 - +0.2
1,776,259 - +0.7
1,776,259 - -1.7
1,776,259 - -1.1
1,776,259 - -0.6
1,776,259 - +0.6
1,777,134 + tig OKGIIK_08045 0.11 -0.7
1,777,135 - tig OKGIIK_08045 0.11 +0.0
1,777,135 - tig OKGIIK_08045 0.11 -0.3
1,777,135 - tig OKGIIK_08045 0.11 -3.8
1,777,164 + tig OKGIIK_08045 0.13 -1.3
1,777,164 + tig OKGIIK_08045 0.13 +1.2
1,777,165 - tig OKGIIK_08045 0.13 -1.5
1,777,785 + tig OKGIIK_08045 0.61 -1.4
1,777,786 - tig OKGIIK_08045 0.61 -1.4
1,777,786 - tig OKGIIK_08045 0.61 -3.0
1,777,974 + tig OKGIIK_08045 0.76 -0.3
1,777,974 + tig OKGIIK_08045 0.76 -1.0
1,777,974 + tig OKGIIK_08045 0.76 -0.5
1,778,300 + -0.3
1,778,300 + -0.7
1,778,300 + -1.1
1,778,300 + +0.1
1,778,301 - +0.9
1,778,301 - -0.3
1,778,301 - +0.4
1,778,303 + -0.4
1,778,303 + -2.1
1,778,303 + -1.3
1,778,303 + -0.2
1,778,303 + -1.9
1,778,304 - +0.6
1,778,304 - +1.8
1,778,304 - -1.6
1,778,304 - +1.2
1,778,304 - -0.2
1,778,304 - +0.0
1,778,304 - -1.0
1,778,304 - -0.3
1,778,304 - +1.6
1,778,304 - -1.6
1,778,304 - +0.4
1,778,361 + -2.6
1,778,361 + +0.4
1,778,362 - -1.4
1,778,362 - -1.4
1,778,486 - -0.4
1,778,486 - -0.9
1,778,486 - -1.6
1,778,486 - +0.9
1,778,490 - +0.3
1,778,490 - -0.3
1,778,490 - -0.2
1,778,490 - -0.1
1,778,490 - -0.1
1,778,490 - -1.7
1,778,490 - -1.1
1,778,490 - +0.0
1,778,490 - -0.4
1,778,490 - -0.2
1,778,490 - -1.0
1,778,490 - -0.2
1,778,490 - -1.6
1,778,490 - +0.2
1,778,490 - -1.7
1,778,494 - -0.5
1,778,494 - -0.4
1,778,494 - -0.5
1,778,494 - +1.3
1,778,494 - -0.7
1,778,568 - -2.0
1,778,568 - +0.7
1,778,568 - -0.4
1,778,568 - -0.7
1,778,568 - -1.9
1,778,568 - +0.1
1,778,568 - -1.0
1,778,568 - -0.5
1,778,568 - -1.8
1,778,584 + +0.6
1,778,585 - -2.0
1,778,587 - -1.0
1,778,587 - +0.6
1,778,587 - +1.1
1,778,587 - -0.2
1,778,605 - -1.3
1,778,605 - +0.9
1,778,605 - +0.4
1,778,605 - -0.3
1,778,605 - -0.7
1,778,923 - -1.0
1,779,275 - +0.3
1,779,275 - +0.6

Or see this region's nucleotide sequence