Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_07930 and fkpA are separated by 144 nucleotides fkpA and OKGIIK_07940 are separated by 157 nucleotides
OKGIIK_07930: OKGIIK_07930 - UDP-glucose 6-dehydrogenase, at 1,755,562 to 1,756,908
_07930
OKGIIK_07935: fkpA - peptidylprolyl isomerase, at 1,757,053 to 1,757,799
fkpA
OKGIIK_07940: OKGIIK_07940 - Potassium transporter, at 1,757,957 to 1,759,729
_07940
Position (kb)
1757
1758 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1756.941 kb on - strand at 1756.941 kb on - strand at 1756.941 kb on - strand at 1756.941 kb on - strand at 1756.941 kb on - strand at 1756.941 kb on - strand at 1756.941 kb on - strand at 1756.941 kb on - strand at 1756.941 kb on - strand at 1756.941 kb on - strand at 1756.946 kb on - strand at 1757.054 kb on + strand at 1757.054 kb on + strand at 1757.054 kb on + strand at 1757.054 kb on + strand at 1757.054 kb on + strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.817 kb on - strand at 1757.823 kb on - strand at 1757.823 kb on - strand at 1757.823 kb on - strand at 1757.823 kb on - strand at 1757.823 kb on - strand at 1757.823 kb on - strand at 1757.823 kb on - strand at 1757.823 kb on - strand at 1757.823 kb on - strand at 1757.910 kb on + strand at 1757.910 kb on + strand at 1757.910 kb on + strand at 1757.911 kb on - strand at 1757.911 kb on - strand at 1757.911 kb on - strand at 1757.911 kb on - strand at 1757.911 kb on - strand at 1758.211 kb on + strand, within OKGIIK_07940 at 1758.211 kb on + strand, within OKGIIK_07940 at 1758.211 kb on + strand, within OKGIIK_07940 at 1758.212 kb on - strand, within OKGIIK_07940 at 1758.212 kb on - strand, within OKGIIK_07940 at 1758.212 kb on - strand, within OKGIIK_07940 at 1758.213 kb on + strand, within OKGIIK_07940 at 1758.213 kb on + strand, within OKGIIK_07940 at 1758.213 kb on + strand, within OKGIIK_07940 at 1758.213 kb on + strand, within OKGIIK_07940 at 1758.213 kb on + strand, within OKGIIK_07940 at 1758.213 kb on + strand, within OKGIIK_07940 at 1758.213 kb on + strand, within OKGIIK_07940 at 1758.213 kb on + strand, within OKGIIK_07940 at 1758.213 kb on + strand, within OKGIIK_07940 at 1758.213 kb on + strand, within OKGIIK_07940 at 1758.213 kb on + strand, within OKGIIK_07940 at 1758.213 kb on + strand, within OKGIIK_07940 at 1758.213 kb on + strand, within OKGIIK_07940 at 1758.214 kb on - strand, within OKGIIK_07940 at 1758.214 kb on - strand, within OKGIIK_07940 at 1758.214 kb on - strand, within OKGIIK_07940 at 1758.214 kb on - strand, within OKGIIK_07940 at 1758.214 kb on - strand, within OKGIIK_07940 at 1758.214 kb on - strand, within OKGIIK_07940 at 1758.214 kb on - strand, within OKGIIK_07940 at 1758.214 kb on - strand, within OKGIIK_07940 at 1758.214 kb on - strand, within OKGIIK_07940 at 1758.214 kb on - strand, within OKGIIK_07940 at 1758.214 kb on - strand, within OKGIIK_07940 at 1758.214 kb on - strand, within OKGIIK_07940 at 1758.214 kb on - strand, within OKGIIK_07940 at 1758.236 kb on + strand, within OKGIIK_07940 at 1758.236 kb on + strand, within OKGIIK_07940 at 1758.236 kb on + strand, within OKGIIK_07940 at 1758.237 kb on - strand, within OKGIIK_07940 at 1758.237 kb on - strand, within OKGIIK_07940 at 1758.237 kb on - strand, within OKGIIK_07940 at 1758.237 kb on - strand, within OKGIIK_07940 at 1758.237 kb on - strand, within OKGIIK_07940 at 1758.282 kb on + strand, within OKGIIK_07940 at 1758.282 kb on + strand, within OKGIIK_07940 at 1758.283 kb on - strand, within OKGIIK_07940 at 1758.337 kb on + strand, within OKGIIK_07940 at 1758.337 kb on + strand, within OKGIIK_07940 at 1758.337 kb on + strand, within OKGIIK_07940 at 1758.338 kb on - strand, within OKGIIK_07940 at 1758.338 kb on - strand, within OKGIIK_07940 at 1758.338 kb on - strand, within OKGIIK_07940 at 1758.399 kb on + strand, within OKGIIK_07940 at 1758.399 kb on + strand, within OKGIIK_07940 at 1758.399 kb on + strand, within OKGIIK_07940 at 1758.399 kb on + strand, within OKGIIK_07940 at 1758.400 kb on - strand, within OKGIIK_07940 at 1758.400 kb on - strand, within OKGIIK_07940 at 1758.400 kb on - strand, within OKGIIK_07940 at 1758.400 kb on - strand, within OKGIIK_07940 at 1758.400 kb on - strand, within OKGIIK_07940 at 1758.448 kb on + strand, within OKGIIK_07940 at 1758.449 kb on - strand, within OKGIIK_07940 at 1758.528 kb on + strand, within OKGIIK_07940 at 1758.528 kb on + strand, within OKGIIK_07940 at 1758.528 kb on + strand, within OKGIIK_07940 at 1758.528 kb on + strand, within OKGIIK_07940 at 1758.528 kb on + strand, within OKGIIK_07940 at 1758.529 kb on - strand, within OKGIIK_07940 at 1758.529 kb on - strand, within OKGIIK_07940 at 1758.529 kb on - strand, within OKGIIK_07940 at 1758.609 kb on + strand, within OKGIIK_07940 at 1758.610 kb on - strand, within OKGIIK_07940 at 1758.610 kb on - strand, within OKGIIK_07940 at 1758.657 kb on + strand, within OKGIIK_07940 at 1758.658 kb on - strand, within OKGIIK_07940 at 1758.736 kb on + strand, within OKGIIK_07940 at 1758.736 kb on + strand, within OKGIIK_07940 at 1758.736 kb on + strand, within OKGIIK_07940 at 1758.736 kb on + strand, within OKGIIK_07940 at 1758.736 kb on + strand, within OKGIIK_07940 at 1758.736 kb on + strand, within OKGIIK_07940 at 1758.737 kb on - strand, within OKGIIK_07940 at 1758.737 kb on - strand, within OKGIIK_07940 at 1758.737 kb on - strand, within OKGIIK_07940 at 1758.737 kb on - strand, within OKGIIK_07940 at 1758.737 kb on - strand, within OKGIIK_07940 at 1758.737 kb on - strand, within OKGIIK_07940 at 1758.737 kb on - strand, within OKGIIK_07940 at 1758.737 kb on - strand, within OKGIIK_07940 at 1758.737 kb on - strand, within OKGIIK_07940 at 1758.737 kb on - strand, within OKGIIK_07940 at 1758.737 kb on - strand, within OKGIIK_07940 at 1758.737 kb on - strand, within OKGIIK_07940
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 1,756,941 - +0.2 1,756,941 - -0.4 1,756,941 - +0.6 1,756,941 - -0.1 1,756,941 - -0.2 1,756,941 - +0.8 1,756,941 - -0.1 1,756,941 - +0.0 1,756,941 - -1.3 1,756,941 - +0.4 1,756,946 - -1.7 1,757,054 + +0.5 1,757,054 + -0.3 1,757,054 + +0.0 1,757,054 + +0.2 1,757,054 + +1.0 1,757,817 - +0.2 1,757,817 - +0.3 1,757,817 - -0.3 1,757,817 - -0.7 1,757,817 - -0.9 1,757,817 - -0.4 1,757,817 - +0.1 1,757,817 - +0.3 1,757,817 - -0.4 1,757,817 - -0.7 1,757,817 - -0.4 1,757,817 - -0.9 1,757,817 - -0.4 1,757,817 - -1.4 1,757,817 - -2.2 1,757,817 - -1.9 1,757,817 - +0.4 1,757,817 - -1.4 1,757,817 - -1.1 1,757,817 - +0.4 1,757,817 - -0.7 1,757,817 - -0.6 1,757,817 - -1.7 1,757,817 - +0.2 1,757,817 - -0.3 1,757,817 - -1.9 1,757,817 - -0.5 1,757,817 - +0.6 1,757,817 - -0.3 1,757,817 - -0.6 1,757,817 - -0.4 1,757,817 - -0.7 1,757,817 - +1.9 1,757,817 - -0.7 1,757,817 - +0.8 1,757,817 - -0.4 1,757,823 - -0.7 1,757,823 - +0.0 1,757,823 - -0.6 1,757,823 - -1.7 1,757,823 - +1.2 1,757,823 - -2.0 1,757,823 - +0.3 1,757,823 - -0.4 1,757,823 - -0.7 1,757,910 + +1.6 1,757,910 + -1.3 1,757,910 + +0.4 1,757,911 - +0.6 1,757,911 - -2.1 1,757,911 - -1.0 1,757,911 - +0.3 1,757,911 - -0.1 1,758,211 + OKGIIK_07940 0.14 -0.6 1,758,211 + OKGIIK_07940 0.14 -0.4 1,758,211 + OKGIIK_07940 0.14 -1.0 1,758,212 - OKGIIK_07940 0.14 +1.0 1,758,212 - OKGIIK_07940 0.14 +0.1 1,758,212 - OKGIIK_07940 0.14 +2.0 1,758,213 + OKGIIK_07940 0.14 +0.8 1,758,213 + OKGIIK_07940 0.14 -0.1 1,758,213 + OKGIIK_07940 0.14 -0.2 1,758,213 + OKGIIK_07940 0.14 +0.5 1,758,213 + OKGIIK_07940 0.14 +0.4 1,758,213 + OKGIIK_07940 0.14 +0.8 1,758,213 + OKGIIK_07940 0.14 +0.3 1,758,213 + OKGIIK_07940 0.14 -0.1 1,758,213 + OKGIIK_07940 0.14 -3.0 1,758,213 + OKGIIK_07940 0.14 -0.4 1,758,213 + OKGIIK_07940 0.14 -1.0 1,758,213 + OKGIIK_07940 0.14 +2.1 1,758,213 + OKGIIK_07940 0.14 -0.3 1,758,214 - OKGIIK_07940 0.14 +0.3 1,758,214 - OKGIIK_07940 0.14 -1.0 1,758,214 - OKGIIK_07940 0.14 -1.1 1,758,214 - OKGIIK_07940 0.14 -0.4 1,758,214 - OKGIIK_07940 0.14 +0.0 1,758,214 - OKGIIK_07940 0.14 +0.6 1,758,214 - OKGIIK_07940 0.14 +0.1 1,758,214 - OKGIIK_07940 0.14 -1.4 1,758,214 - OKGIIK_07940 0.14 -0.5 1,758,214 - OKGIIK_07940 0.14 +0.9 1,758,214 - OKGIIK_07940 0.14 -0.2 1,758,214 - OKGIIK_07940 0.14 +1.0 1,758,214 - OKGIIK_07940 0.14 -0.6 1,758,236 + OKGIIK_07940 0.16 -1.4 1,758,236 + OKGIIK_07940 0.16 -0.4 1,758,236 + OKGIIK_07940 0.16 +1.2 1,758,237 - OKGIIK_07940 0.16 +1.6 1,758,237 - OKGIIK_07940 0.16 +0.6 1,758,237 - OKGIIK_07940 0.16 +1.0 1,758,237 - OKGIIK_07940 0.16 -0.8 1,758,237 - OKGIIK_07940 0.16 +0.2 1,758,282 + OKGIIK_07940 0.18 +0.3 1,758,282 + OKGIIK_07940 0.18 -2.6 1,758,283 - OKGIIK_07940 0.18 -1.0 1,758,337 + OKGIIK_07940 0.21 -1.7 1,758,337 + OKGIIK_07940 0.21 -0.5 1,758,337 + OKGIIK_07940 0.21 -0.9 1,758,338 - OKGIIK_07940 0.21 +0.0 1,758,338 - OKGIIK_07940 0.21 -0.2 1,758,338 - OKGIIK_07940 0.21 -0.9 1,758,399 + OKGIIK_07940 0.25 +0.0 1,758,399 + OKGIIK_07940 0.25 -0.4 1,758,399 + OKGIIK_07940 0.25 -0.1 1,758,399 + OKGIIK_07940 0.25 +0.0 1,758,400 - OKGIIK_07940 0.25 +0.0 1,758,400 - OKGIIK_07940 0.25 -0.6 1,758,400 - OKGIIK_07940 0.25 -1.2 1,758,400 - OKGIIK_07940 0.25 +1.6 1,758,400 - OKGIIK_07940 0.25 -0.1 1,758,448 + OKGIIK_07940 0.28 +0.5 1,758,449 - OKGIIK_07940 0.28 -0.9 1,758,528 + OKGIIK_07940 0.32 +1.6 1,758,528 + OKGIIK_07940 0.32 -0.5 1,758,528 + OKGIIK_07940 0.32 -0.9 1,758,528 + OKGIIK_07940 0.32 -2.2 1,758,528 + OKGIIK_07940 0.32 +0.2 1,758,529 - OKGIIK_07940 0.32 +0.6 1,758,529 - OKGIIK_07940 0.32 -2.0 1,758,529 - OKGIIK_07940 0.32 -1.0 1,758,609 + OKGIIK_07940 0.37 -0.7 1,758,610 - OKGIIK_07940 0.37 -0.2 1,758,610 - OKGIIK_07940 0.37 +1.0 1,758,657 + OKGIIK_07940 0.39 -0.8 1,758,658 - OKGIIK_07940 0.40 -1.2 1,758,736 + OKGIIK_07940 0.44 +0.0 1,758,736 + OKGIIK_07940 0.44 +0.4 1,758,736 + OKGIIK_07940 0.44 +0.1 1,758,736 + OKGIIK_07940 0.44 +0.0 1,758,736 + OKGIIK_07940 0.44 +0.5 1,758,736 + OKGIIK_07940 0.44 -0.7 1,758,737 - OKGIIK_07940 0.44 +0.0 1,758,737 - OKGIIK_07940 0.44 -1.0 1,758,737 - OKGIIK_07940 0.44 -0.8 1,758,737 - OKGIIK_07940 0.44 +0.2 1,758,737 - OKGIIK_07940 0.44 +0.3 1,758,737 - OKGIIK_07940 0.44 -0.4 1,758,737 - OKGIIK_07940 0.44 -1.2 1,758,737 - OKGIIK_07940 0.44 -1.9 1,758,737 - OKGIIK_07940 0.44 -1.0 1,758,737 - OKGIIK_07940 0.44 -0.6 1,758,737 - OKGIIK_07940 0.44 -0.0 1,758,737 - OKGIIK_07940 0.44 -0.5
Or see this region's nucleotide sequence