Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_07885

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlepB and OKGIIK_07885 are separated by 99 nucleotidesOKGIIK_07885 and OKGIIK_07890 are separated by 199 nucleotides OKGIIK_07880: lepB - signal peptidase I, at 1,743,085 to 1,743,981 lepB OKGIIK_07885: OKGIIK_07885 - Elongation factor 4, at 1,744,081 to 1,745,871 _07885 OKGIIK_07890: OKGIIK_07890 - Periplasmic serine endoprotease DegP-like, at 1,746,071 to 1,747,537 _07890 Position (kb) 1744 1745 1746Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.083 kb on - strandat 1744.100 kb on - strandat 1744.463 kb on + strand, within OKGIIK_07885at 1744.479 kb on - strand, within OKGIIK_07885at 1744.544 kb on + strand, within OKGIIK_07885at 1744.544 kb on + strand, within OKGIIK_07885at 1744.545 kb on - strand, within OKGIIK_07885at 1744.545 kb on - strand, within OKGIIK_07885at 1744.545 kb on - strand, within OKGIIK_07885at 1744.571 kb on + strand, within OKGIIK_07885at 1744.572 kb on - strand, within OKGIIK_07885at 1744.631 kb on + strand, within OKGIIK_07885at 1744.631 kb on + strand, within OKGIIK_07885at 1744.632 kb on - strand, within OKGIIK_07885at 1744.632 kb on - strand, within OKGIIK_07885at 1744.757 kb on + strand, within OKGIIK_07885at 1744.758 kb on - strand, within OKGIIK_07885at 1745.264 kb on + strand, within OKGIIK_07885at 1745.264 kb on + strand, within OKGIIK_07885at 1745.265 kb on - strand, within OKGIIK_07885at 1745.265 kb on - strand, within OKGIIK_07885at 1745.265 kb on - strand, within OKGIIK_07885at 1745.265 kb on - strand, within OKGIIK_07885at 1745.265 kb on - strand, within OKGIIK_07885at 1745.265 kb on - strand, within OKGIIK_07885at 1745.522 kb on + strand, within OKGIIK_07885at 1745.522 kb on + strand, within OKGIIK_07885at 1745.523 kb on - strand, within OKGIIK_07885at 1745.523 kb on - strand, within OKGIIK_07885at 1745.523 kb on - strand, within OKGIIK_07885at 1745.523 kb on - strand, within OKGIIK_07885at 1745.523 kb on - strand, within OKGIIK_07885at 1745.566 kb on + strand, within OKGIIK_07885at 1745.566 kb on + strand, within OKGIIK_07885at 1745.566 kb on + strand, within OKGIIK_07885at 1745.566 kb on + strand, within OKGIIK_07885at 1745.567 kb on - strand, within OKGIIK_07885at 1745.567 kb on - strand, within OKGIIK_07885at 1745.567 kb on - strand, within OKGIIK_07885at 1745.616 kb on - strand, within OKGIIK_07885at 1745.660 kb on + strand, within OKGIIK_07885at 1745.661 kb on - strand, within OKGIIK_07885at 1745.661 kb on - strand, within OKGIIK_07885at 1745.661 kb on - strand, within OKGIIK_07885at 1745.684 kb on + strand, within OKGIIK_07885at 1745.684 kb on + strand, within OKGIIK_07885at 1745.685 kb on - strand, within OKGIIK_07885at 1745.685 kb on - strand, within OKGIIK_07885at 1745.961 kb on - strandat 1746.072 kb on + strandat 1746.072 kb on + strandat 1746.072 kb on + strandat 1746.072 kb on + strandat 1746.072 kb on + strandat 1746.072 kb on + strandat 1746.555 kb on + strand, within OKGIIK_07890at 1746.635 kb on + strand, within OKGIIK_07890at 1746.636 kb on - strand, within OKGIIK_07890at 1746.717 kb on + strand, within OKGIIK_07890at 1746.717 kb on + strand, within OKGIIK_07890at 1746.717 kb on + strand, within OKGIIK_07890at 1746.717 kb on + strand, within OKGIIK_07890at 1746.717 kb on + strand, within OKGIIK_07890at 1746.717 kb on + strand, within OKGIIK_07890at 1746.717 kb on + strand, within OKGIIK_07890at 1746.717 kb on + strand, within OKGIIK_07890at 1746.717 kb on + strand, within OKGIIK_07890at 1746.717 kb on + strand, within OKGIIK_07890at 1746.717 kb on + strand, within OKGIIK_07890at 1746.717 kb on + strand, within OKGIIK_07890at 1746.717 kb on + strand, within OKGIIK_07890at 1746.717 kb on + strand, within OKGIIK_07890at 1746.718 kb on - strand, within OKGIIK_07890at 1746.718 kb on - strand, within OKGIIK_07890at 1746.718 kb on - strand, within OKGIIK_07890at 1746.718 kb on - strand, within OKGIIK_07890at 1746.718 kb on - strand, within OKGIIK_07890at 1746.718 kb on - strand, within OKGIIK_07890at 1746.718 kb on - strand, within OKGIIK_07890at 1746.789 kb on + strand, within OKGIIK_07890at 1746.789 kb on + strand, within OKGIIK_07890at 1746.789 kb on + strand, within OKGIIK_07890at 1746.789 kb on + strand, within OKGIIK_07890at 1746.789 kb on + strand, within OKGIIK_07890at 1746.789 kb on + strand, within OKGIIK_07890at 1746.790 kb on - strand, within OKGIIK_07890at 1746.790 kb on - strand, within OKGIIK_07890at 1746.790 kb on - strand, within OKGIIK_07890at 1746.805 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.807 kb on + strand, within OKGIIK_07890at 1746.808 kb on - strand, within OKGIIK_07890at 1746.808 kb on - strand, within OKGIIK_07890at 1746.808 kb on - strand, within OKGIIK_07890at 1746.808 kb on - strand, within OKGIIK_07890at 1746.808 kb on - strand, within OKGIIK_07890at 1746.808 kb on - strand, within OKGIIK_07890at 1746.808 kb on - strand, within OKGIIK_07890at 1746.808 kb on - strand, within OKGIIK_07890at 1746.808 kb on - strand, within OKGIIK_07890at 1746.808 kb on - strand, within OKGIIK_07890at 1746.808 kb on - strand, within OKGIIK_07890at 1746.808 kb on - strand, within OKGIIK_07890at 1746.808 kb on - strand, within OKGIIK_07890at 1746.808 kb on - strand, within OKGIIK_07890at 1746.808 kb on - strand, within OKGIIK_07890

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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1,744,083 - -0.9
1,744,083 - +0.3
1,744,083 - -0.4
1,744,083 - +1.6
1,744,083 - -0.4
1,744,083 - +1.2
1,744,083 - -0.2
1,744,083 - +0.2
1,744,083 - -1.4
1,744,100 - -0.7
1,744,463 + OKGIIK_07885 0.21 -1.2
1,744,479 - OKGIIK_07885 0.22 -2.1
1,744,544 + OKGIIK_07885 0.26 -0.7
1,744,544 + OKGIIK_07885 0.26 -1.2
1,744,545 - OKGIIK_07885 0.26 -1.7
1,744,545 - OKGIIK_07885 0.26 -0.7
1,744,545 - OKGIIK_07885 0.26 +0.6
1,744,571 + OKGIIK_07885 0.27 -0.7
1,744,572 - OKGIIK_07885 0.27 +0.2
1,744,631 + OKGIIK_07885 0.31 +1.4
1,744,631 + OKGIIK_07885 0.31 -0.9
1,744,632 - OKGIIK_07885 0.31 +1.0
1,744,632 - OKGIIK_07885 0.31 -0.7
1,744,757 + OKGIIK_07885 0.38 -0.4
1,744,758 - OKGIIK_07885 0.38 -0.4
1,745,264 + OKGIIK_07885 0.66 -0.6
1,745,264 + OKGIIK_07885 0.66 -0.4
1,745,265 - OKGIIK_07885 0.66 -0.9
1,745,265 - OKGIIK_07885 0.66 +0.2
1,745,265 - OKGIIK_07885 0.66 +2.2
1,745,265 - OKGIIK_07885 0.66 -0.7
1,745,265 - OKGIIK_07885 0.66 +1.2
1,745,265 - OKGIIK_07885 0.66 +0.3
1,745,522 + OKGIIK_07885 0.80 -0.4
1,745,522 + OKGIIK_07885 0.80 -1.2
1,745,523 - OKGIIK_07885 0.81 +0.3
1,745,523 - OKGIIK_07885 0.81 -1.6
1,745,523 - OKGIIK_07885 0.81 +0.9
1,745,523 - OKGIIK_07885 0.81 +0.8
1,745,523 - OKGIIK_07885 0.81 -0.4
1,745,566 + OKGIIK_07885 0.83 -0.4
1,745,566 + OKGIIK_07885 0.83 -1.5
1,745,566 + OKGIIK_07885 0.83 -1.0
1,745,566 + OKGIIK_07885 0.83 -1.7
1,745,567 - OKGIIK_07885 0.83 -3.4
1,745,567 - OKGIIK_07885 0.83 -0.4
1,745,567 - OKGIIK_07885 0.83 -1.2
1,745,616 - OKGIIK_07885 0.86 -0.9
1,745,660 + OKGIIK_07885 0.88 -0.3
1,745,661 - OKGIIK_07885 0.88 -2.3
1,745,661 - OKGIIK_07885 0.88 -1.0
1,745,661 - OKGIIK_07885 0.88 -0.7
1,745,684 + OKGIIK_07885 0.90 -1.2
1,745,684 + OKGIIK_07885 0.90 +0.6
1,745,685 - OKGIIK_07885 0.90 -2.6
1,745,685 - OKGIIK_07885 0.90 +0.3
1,745,961 - -0.8
1,746,072 + +0.7
1,746,072 + +0.4
1,746,072 + +0.0
1,746,072 + +0.6
1,746,072 + -1.2
1,746,072 + +1.2
1,746,555 + OKGIIK_07890 0.33 -0.5
1,746,635 + OKGIIK_07890 0.38 -1.6
1,746,636 - OKGIIK_07890 0.39 +0.1
1,746,717 + OKGIIK_07890 0.44 +0.1
1,746,717 + OKGIIK_07890 0.44 +1.9
1,746,717 + OKGIIK_07890 0.44 +0.9
1,746,717 + OKGIIK_07890 0.44 +0.5
1,746,717 + OKGIIK_07890 0.44 -0.2
1,746,717 + OKGIIK_07890 0.44 -1.9
1,746,717 + OKGIIK_07890 0.44 -1.2
1,746,717 + OKGIIK_07890 0.44 +1.3
1,746,717 + OKGIIK_07890 0.44 -0.5
1,746,717 + OKGIIK_07890 0.44 -0.4
1,746,717 + OKGIIK_07890 0.44 +0.4
1,746,717 + OKGIIK_07890 0.44 +0.1
1,746,717 + OKGIIK_07890 0.44 +0.0
1,746,717 + OKGIIK_07890 0.44 -0.1
1,746,718 - OKGIIK_07890 0.44 +1.1
1,746,718 - OKGIIK_07890 0.44 +0.6
1,746,718 - OKGIIK_07890 0.44 +0.0
1,746,718 - OKGIIK_07890 0.44 -3.0
1,746,718 - OKGIIK_07890 0.44 -0.0
1,746,718 - OKGIIK_07890 0.44 +0.0
1,746,718 - OKGIIK_07890 0.44 -0.9
1,746,789 + OKGIIK_07890 0.49 -1.7
1,746,789 + OKGIIK_07890 0.49 -0.6
1,746,789 + OKGIIK_07890 0.49 +0.0
1,746,789 + OKGIIK_07890 0.49 -1.2
1,746,789 + OKGIIK_07890 0.49 -1.7
1,746,789 + OKGIIK_07890 0.49 +0.6
1,746,790 - OKGIIK_07890 0.49 +0.4
1,746,790 - OKGIIK_07890 0.49 +0.9
1,746,790 - OKGIIK_07890 0.49 +1.1
1,746,805 + OKGIIK_07890 0.50 -0.2
1,746,807 + OKGIIK_07890 0.50 -0.4
1,746,807 + OKGIIK_07890 0.50 -0.3
1,746,807 + OKGIIK_07890 0.50 -1.4
1,746,807 + OKGIIK_07890 0.50 -0.2
1,746,807 + OKGIIK_07890 0.50 +0.0
1,746,807 + OKGIIK_07890 0.50 -0.7
1,746,807 + OKGIIK_07890 0.50 -2.0
1,746,807 + OKGIIK_07890 0.50 -0.8
1,746,807 + OKGIIK_07890 0.50 +0.6
1,746,807 + OKGIIK_07890 0.50 -2.3
1,746,807 + OKGIIK_07890 0.50 -0.0
1,746,807 + OKGIIK_07890 0.50 -0.9
1,746,807 + OKGIIK_07890 0.50 +0.1
1,746,807 + OKGIIK_07890 0.50 +0.4
1,746,807 + OKGIIK_07890 0.50 +1.6
1,746,807 + OKGIIK_07890 0.50 +0.3
1,746,807 + OKGIIK_07890 0.50 +0.6
1,746,808 - OKGIIK_07890 0.50 -0.7
1,746,808 - OKGIIK_07890 0.50 -0.3
1,746,808 - OKGIIK_07890 0.50 +0.6
1,746,808 - OKGIIK_07890 0.50 -0.1
1,746,808 - OKGIIK_07890 0.50 -0.5
1,746,808 - OKGIIK_07890 0.50 +1.3
1,746,808 - OKGIIK_07890 0.50 -0.7
1,746,808 - OKGIIK_07890 0.50 +0.7
1,746,808 - OKGIIK_07890 0.50 -1.6
1,746,808 - OKGIIK_07890 0.50 -0.4
1,746,808 - OKGIIK_07890 0.50 +0.5
1,746,808 - OKGIIK_07890 0.50 -0.6
1,746,808 - OKGIIK_07890 0.50 +0.6
1,746,808 - OKGIIK_07890 0.50 -1.0
1,746,808 - OKGIIK_07890 0.50 +0.2

Or see this region's nucleotide sequence