Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt era and rnc are separated by 78 nucleotides rnc and OKGIIK_07875 are separated by 1 nucleotides OKGIIK_07875 and lepB are separated by 176 nucleotides
OKGIIK_07865: era - GTPase Era, at 1,740,850 to 1,741,782
era
OKGIIK_07870: rnc - ribonuclease III, at 1,741,861 to 1,742,523
rnc
OKGIIK_07875: OKGIIK_07875 - DUF4845 domain-containing protein, at 1,742,525 to 1,742,908
_07875
OKGIIK_07880: lepB - signal peptidase I, at 1,743,085 to 1,743,981
lepB
Position (kb)
1741
1742
1743 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1740.861 kb on - strand at 1740.861 kb on - strand at 1740.861 kb on - strand at 1740.861 kb on - strand at 1740.861 kb on - strand at 1741.817 kb on + strand at 1741.817 kb on + strand at 1741.817 kb on + strand at 1741.817 kb on + strand at 1741.817 kb on + strand at 1741.817 kb on + strand at 1741.817 kb on + strand at 1741.817 kb on + strand at 1741.817 kb on + strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1741.818 kb on - strand at 1742.181 kb on - strand, within rnc at 1742.181 kb on - strand, within rnc at 1742.381 kb on + strand, within rnc at 1742.382 kb on - strand, within rnc at 1742.508 kb on - strand at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.589 kb on + strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.590 kb on - strand, within OKGIIK_07875 at 1742.613 kb on + strand, within OKGIIK_07875 at 1742.613 kb on + strand, within OKGIIK_07875 at 1742.613 kb on + strand, within OKGIIK_07875 at 1742.614 kb on - strand, within OKGIIK_07875 at 1742.614 kb on - strand, within OKGIIK_07875 at 1742.614 kb on - strand, within OKGIIK_07875 at 1742.694 kb on + strand, within OKGIIK_07875 at 1742.694 kb on + strand, within OKGIIK_07875 at 1742.694 kb on + strand, within OKGIIK_07875 at 1742.694 kb on + strand, within OKGIIK_07875 at 1742.695 kb on - strand, within OKGIIK_07875 at 1742.695 kb on - strand, within OKGIIK_07875 at 1742.695 kb on - strand, within OKGIIK_07875 at 1742.695 kb on - strand, within OKGIIK_07875 at 1742.695 kb on - strand, within OKGIIK_07875 at 1742.695 kb on - strand, within OKGIIK_07875 at 1742.695 kb on - strand, within OKGIIK_07875 at 1742.695 kb on - strand, within OKGIIK_07875 at 1742.799 kb on + strand, within OKGIIK_07875 at 1742.799 kb on + strand, within OKGIIK_07875 at 1742.799 kb on + strand, within OKGIIK_07875 at 1742.799 kb on + strand, within OKGIIK_07875 at 1742.799 kb on + strand, within OKGIIK_07875 at 1742.799 kb on + strand, within OKGIIK_07875 at 1742.799 kb on + strand, within OKGIIK_07875 at 1742.799 kb on + strand, within OKGIIK_07875 at 1742.800 kb on - strand, within OKGIIK_07875 at 1742.800 kb on - strand, within OKGIIK_07875 at 1742.800 kb on - strand, within OKGIIK_07875 at 1742.800 kb on - strand, within OKGIIK_07875 at 1742.800 kb on - strand, within OKGIIK_07875 at 1742.800 kb on - strand, within OKGIIK_07875 at 1742.800 kb on - strand, within OKGIIK_07875 at 1742.800 kb on - strand, within OKGIIK_07875 at 1742.800 kb on - strand, within OKGIIK_07875 at 1742.800 kb on - strand, within OKGIIK_07875 at 1742.800 kb on - strand, within OKGIIK_07875 at 1742.800 kb on - strand, within OKGIIK_07875 at 1742.800 kb on - strand, within OKGIIK_07875 at 1742.800 kb on - strand, within OKGIIK_07875 at 1742.808 kb on + strand, within OKGIIK_07875 at 1742.808 kb on + strand, within OKGIIK_07875 at 1742.809 kb on - strand, within OKGIIK_07875 at 1742.809 kb on - strand, within OKGIIK_07875 at 1742.809 kb on - strand, within OKGIIK_07875 at 1742.835 kb on + strand, within OKGIIK_07875 at 1742.835 kb on + strand, within OKGIIK_07875 at 1742.835 kb on + strand, within OKGIIK_07875 at 1742.835 kb on + strand, within OKGIIK_07875 at 1742.835 kb on + strand, within OKGIIK_07875 at 1742.835 kb on + strand, within OKGIIK_07875 at 1742.835 kb on + strand, within OKGIIK_07875 at 1742.836 kb on - strand, within OKGIIK_07875 at 1742.836 kb on - strand, within OKGIIK_07875 at 1742.836 kb on - strand, within OKGIIK_07875 at 1742.836 kb on - strand, within OKGIIK_07875 at 1742.836 kb on - strand, within OKGIIK_07875 at 1742.836 kb on - strand, within OKGIIK_07875 at 1742.836 kb on - strand, within OKGIIK_07875 at 1742.836 kb on - strand, within OKGIIK_07875 at 1742.836 kb on - strand, within OKGIIK_07875 at 1742.836 kb on - strand, within OKGIIK_07875 at 1742.908 kb on + strand at 1742.908 kb on + strand at 1742.909 kb on - strand at 1742.909 kb on - strand at 1742.909 kb on - strand at 1742.909 kb on - strand at 1742.939 kb on + strand at 1742.939 kb on + strand at 1742.939 kb on + strand at 1742.940 kb on - strand at 1742.940 kb on - strand at 1742.940 kb on - strand at 1742.940 kb on - strand at 1742.940 kb on - strand at 1742.940 kb on - strand at 1742.940 kb on - strand at 1742.940 kb on - strand at 1742.940 kb on - strand at 1742.940 kb on - strand at 1742.940 kb on - strand at 1742.995 kb on + strand at 1742.995 kb on + strand at 1742.995 kb on + strand at 1742.996 kb on - strand at 1742.996 kb on - strand at 1742.996 kb on - strand at 1742.996 kb on - strand at 1742.996 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 1,740,861 - -0.2 1,740,861 - +0.9 1,740,861 - -0.4 1,740,861 - -1.7 1,740,861 - -1.0 1,741,817 + -0.5 1,741,817 + -0.0 1,741,817 + +0.5 1,741,817 + +0.2 1,741,817 + +1.8 1,741,817 + +0.3 1,741,817 + -0.4 1,741,817 + -0.7 1,741,817 + -1.5 1,741,818 - -0.5 1,741,818 - +0.9 1,741,818 - -1.4 1,741,818 - +0.6 1,741,818 - -0.1 1,741,818 - +0.1 1,741,818 - -0.7 1,741,818 - +0.1 1,741,818 - +1.9 1,741,818 - -0.9 1,741,818 - +0.2 1,741,818 - +0.1 1,741,818 - -0.3 1,741,818 - -0.1 1,741,818 - -0.8 1,741,818 - -3.4 1,741,818 - -1.0 1,742,181 - rnc OKGIIK_07870 0.48 -1.0 1,742,181 - rnc OKGIIK_07870 0.48 -2.5 1,742,381 + rnc OKGIIK_07870 0.78 -0.4 1,742,382 - rnc OKGIIK_07870 0.79 -0.7 1,742,508 - -0.7 1,742,589 + OKGIIK_07875 0.17 -1.6 1,742,589 + OKGIIK_07875 0.17 -0.2 1,742,589 + OKGIIK_07875 0.17 -1.2 1,742,589 + OKGIIK_07875 0.17 +0.0 1,742,589 + OKGIIK_07875 0.17 -1.7 1,742,589 + OKGIIK_07875 0.17 -2.1 1,742,589 + OKGIIK_07875 0.17 -0.2 1,742,589 + OKGIIK_07875 0.17 +0.2 1,742,589 + OKGIIK_07875 0.17 +0.9 1,742,589 + OKGIIK_07875 0.17 -0.3 1,742,589 + OKGIIK_07875 0.17 -1.0 1,742,589 + OKGIIK_07875 0.17 -1.0 1,742,589 + OKGIIK_07875 0.17 +1.3 1,742,589 + OKGIIK_07875 0.17 -0.4 1,742,589 + OKGIIK_07875 0.17 -0.6 1,742,589 + OKGIIK_07875 0.17 +0.1 1,742,589 + OKGIIK_07875 0.17 -0.4 1,742,589 + OKGIIK_07875 0.17 -2.4 1,742,589 + OKGIIK_07875 0.17 -1.0 1,742,589 + OKGIIK_07875 0.17 +0.0 1,742,589 + OKGIIK_07875 0.17 +0.3 1,742,590 - OKGIIK_07875 0.17 -0.4 1,742,590 - OKGIIK_07875 0.17 +0.6 1,742,590 - OKGIIK_07875 0.17 -0.4 1,742,590 - OKGIIK_07875 0.17 -0.4 1,742,590 - OKGIIK_07875 0.17 +1.0 1,742,590 - OKGIIK_07875 0.17 -0.5 1,742,590 - OKGIIK_07875 0.17 -1.6 1,742,590 - OKGIIK_07875 0.17 +0.4 1,742,590 - OKGIIK_07875 0.17 +0.5 1,742,590 - OKGIIK_07875 0.17 +0.0 1,742,590 - OKGIIK_07875 0.17 -1.2 1,742,590 - OKGIIK_07875 0.17 +1.3 1,742,590 - OKGIIK_07875 0.17 -0.6 1,742,590 - OKGIIK_07875 0.17 -1.4 1,742,590 - OKGIIK_07875 0.17 -1.4 1,742,590 - OKGIIK_07875 0.17 +0.1 1,742,590 - OKGIIK_07875 0.17 +0.2 1,742,590 - OKGIIK_07875 0.17 -0.3 1,742,590 - OKGIIK_07875 0.17 -0.1 1,742,590 - OKGIIK_07875 0.17 -0.4 1,742,590 - OKGIIK_07875 0.17 +1.4 1,742,613 + OKGIIK_07875 0.23 -0.7 1,742,613 + OKGIIK_07875 0.23 -0.6 1,742,613 + OKGIIK_07875 0.23 -1.4 1,742,614 - OKGIIK_07875 0.23 -0.0 1,742,614 - OKGIIK_07875 0.23 +1.0 1,742,614 - OKGIIK_07875 0.23 +0.0 1,742,694 + OKGIIK_07875 0.44 -0.4 1,742,694 + OKGIIK_07875 0.44 -0.6 1,742,694 + OKGIIK_07875 0.44 -0.9 1,742,694 + OKGIIK_07875 0.44 +0.6 1,742,695 - OKGIIK_07875 0.44 -0.9 1,742,695 - OKGIIK_07875 0.44 +0.2 1,742,695 - OKGIIK_07875 0.44 -2.1 1,742,695 - OKGIIK_07875 0.44 +0.0 1,742,695 - OKGIIK_07875 0.44 -1.0 1,742,695 - OKGIIK_07875 0.44 +0.0 1,742,695 - OKGIIK_07875 0.44 +0.4 1,742,695 - OKGIIK_07875 0.44 -1.9 1,742,799 + OKGIIK_07875 0.71 -0.3 1,742,799 + OKGIIK_07875 0.71 -1.3 1,742,799 + OKGIIK_07875 0.71 +0.0 1,742,799 + OKGIIK_07875 0.71 +0.3 1,742,799 + OKGIIK_07875 0.71 -1.4 1,742,799 + OKGIIK_07875 0.71 +0.5 1,742,799 + OKGIIK_07875 0.71 -2.2 1,742,799 + OKGIIK_07875 0.71 +0.0 1,742,800 - OKGIIK_07875 0.72 +1.8 1,742,800 - OKGIIK_07875 0.72 -0.3 1,742,800 - OKGIIK_07875 0.72 +0.2 1,742,800 - OKGIIK_07875 0.72 +1.6 1,742,800 - OKGIIK_07875 0.72 -0.7 1,742,800 - OKGIIK_07875 0.72 -0.6 1,742,800 - OKGIIK_07875 0.72 +1.8 1,742,800 - OKGIIK_07875 0.72 +0.6 1,742,800 - OKGIIK_07875 0.72 -1.0 1,742,800 - OKGIIK_07875 0.72 -0.4 1,742,800 - OKGIIK_07875 0.72 +0.6 1,742,800 - OKGIIK_07875 0.72 -2.2 1,742,800 - OKGIIK_07875 0.72 +0.4 1,742,800 - OKGIIK_07875 0.72 +0.2 1,742,808 + OKGIIK_07875 0.74 -2.1 1,742,808 + OKGIIK_07875 0.74 -1.0 1,742,809 - OKGIIK_07875 0.74 -0.7 1,742,809 - OKGIIK_07875 0.74 -0.4 1,742,809 - OKGIIK_07875 0.74 +1.7 1,742,835 + OKGIIK_07875 0.81 +1.9 1,742,835 + OKGIIK_07875 0.81 -0.6 1,742,835 + OKGIIK_07875 0.81 -2.1 1,742,835 + OKGIIK_07875 0.81 -0.5 1,742,835 + OKGIIK_07875 0.81 -1.4 1,742,835 + OKGIIK_07875 0.81 -1.1 1,742,835 + OKGIIK_07875 0.81 +0.9 1,742,836 - OKGIIK_07875 0.81 -1.3 1,742,836 - OKGIIK_07875 0.81 +1.3 1,742,836 - OKGIIK_07875 0.81 -1.3 1,742,836 - OKGIIK_07875 0.81 -1.0 1,742,836 - OKGIIK_07875 0.81 -0.4 1,742,836 - OKGIIK_07875 0.81 +1.0 1,742,836 - OKGIIK_07875 0.81 +1.6 1,742,836 - OKGIIK_07875 0.81 -0.8 1,742,836 - OKGIIK_07875 0.81 +0.1 1,742,836 - OKGIIK_07875 0.81 +0.6 1,742,908 + -1.7 1,742,908 + -0.5 1,742,909 - +1.1 1,742,909 - -0.4 1,742,909 - -0.7 1,742,909 - +0.4 1,742,939 + -1.9 1,742,939 + -1.9 1,742,939 + +1.1 1,742,940 - +0.5 1,742,940 - -0.1 1,742,940 - -0.4 1,742,940 - -0.3 1,742,940 - +0.6 1,742,940 - +0.5 1,742,940 - +0.9 1,742,940 - -1.6 1,742,940 - -2.3 1,742,940 - -0.1 1,742,940 - -1.7 1,742,995 + -0.1 1,742,995 + -0.7 1,742,995 + -1.2 1,742,996 - -0.6 1,742,996 - -0.8 1,742,996 - +0.6 1,742,996 - +1.9 1,742,996 - -0.4
Or see this region's nucleotide sequence