Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_07870

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntera and rnc are separated by 78 nucleotidesrnc and OKGIIK_07875 are separated by 1 nucleotidesOKGIIK_07875 and lepB are separated by 176 nucleotides OKGIIK_07865: era - GTPase Era, at 1,740,850 to 1,741,782 era OKGIIK_07870: rnc - ribonuclease III, at 1,741,861 to 1,742,523 rnc OKGIIK_07875: OKGIIK_07875 - DUF4845 domain-containing protein, at 1,742,525 to 1,742,908 _07875 OKGIIK_07880: lepB - signal peptidase I, at 1,743,085 to 1,743,981 lepB Position (kb) 1741 1742 1743Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1740.861 kb on - strandat 1740.861 kb on - strandat 1740.861 kb on - strandat 1740.861 kb on - strandat 1740.861 kb on - strandat 1741.817 kb on + strandat 1741.817 kb on + strandat 1741.817 kb on + strandat 1741.817 kb on + strandat 1741.817 kb on + strandat 1741.817 kb on + strandat 1741.817 kb on + strandat 1741.817 kb on + strandat 1741.817 kb on + strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1741.818 kb on - strandat 1742.181 kb on - strand, within rncat 1742.181 kb on - strand, within rncat 1742.381 kb on + strand, within rncat 1742.382 kb on - strand, within rncat 1742.508 kb on - strandat 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.589 kb on + strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.590 kb on - strand, within OKGIIK_07875at 1742.613 kb on + strand, within OKGIIK_07875at 1742.613 kb on + strand, within OKGIIK_07875at 1742.613 kb on + strand, within OKGIIK_07875at 1742.614 kb on - strand, within OKGIIK_07875at 1742.614 kb on - strand, within OKGIIK_07875at 1742.614 kb on - strand, within OKGIIK_07875at 1742.694 kb on + strand, within OKGIIK_07875at 1742.694 kb on + strand, within OKGIIK_07875at 1742.694 kb on + strand, within OKGIIK_07875at 1742.694 kb on + strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.695 kb on - strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.799 kb on + strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.800 kb on - strand, within OKGIIK_07875at 1742.808 kb on + strand, within OKGIIK_07875at 1742.808 kb on + strand, within OKGIIK_07875at 1742.809 kb on - strand, within OKGIIK_07875at 1742.809 kb on - strand, within OKGIIK_07875at 1742.809 kb on - strand, within OKGIIK_07875at 1742.835 kb on + strand, within OKGIIK_07875at 1742.835 kb on + strand, within OKGIIK_07875at 1742.835 kb on + strand, within OKGIIK_07875at 1742.835 kb on + strand, within OKGIIK_07875at 1742.835 kb on + strand, within OKGIIK_07875at 1742.835 kb on + strand, within OKGIIK_07875at 1742.835 kb on + strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.836 kb on - strand, within OKGIIK_07875at 1742.908 kb on + strandat 1742.908 kb on + strandat 1742.909 kb on - strandat 1742.909 kb on - strandat 1742.909 kb on - strandat 1742.909 kb on - strandat 1742.939 kb on + strandat 1742.939 kb on + strandat 1742.939 kb on + strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.940 kb on - strandat 1742.995 kb on + strandat 1742.995 kb on + strandat 1742.995 kb on + strandat 1742.996 kb on - strandat 1742.996 kb on - strandat 1742.996 kb on - strandat 1742.996 kb on - strandat 1742.996 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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1,740,861 - -0.2
1,740,861 - +0.9
1,740,861 - -0.4
1,740,861 - -1.7
1,740,861 - -1.0
1,741,817 + -0.5
1,741,817 + -0.0
1,741,817 + +0.5
1,741,817 + +0.2
1,741,817 + +1.8
1,741,817 + +0.3
1,741,817 + -0.4
1,741,817 + -0.7
1,741,817 + -1.5
1,741,818 - -0.5
1,741,818 - +0.9
1,741,818 - -1.4
1,741,818 - +0.6
1,741,818 - -0.1
1,741,818 - +0.1
1,741,818 - -0.7
1,741,818 - +0.1
1,741,818 - +1.9
1,741,818 - -0.9
1,741,818 - +0.2
1,741,818 - +0.1
1,741,818 - -0.3
1,741,818 - -0.1
1,741,818 - -0.8
1,741,818 - -3.4
1,741,818 - -1.0
1,742,181 - rnc OKGIIK_07870 0.48 -1.0
1,742,181 - rnc OKGIIK_07870 0.48 -2.5
1,742,381 + rnc OKGIIK_07870 0.78 -0.4
1,742,382 - rnc OKGIIK_07870 0.79 -0.7
1,742,508 - -0.7
1,742,589 + OKGIIK_07875 0.17 -1.6
1,742,589 + OKGIIK_07875 0.17 -0.2
1,742,589 + OKGIIK_07875 0.17 -1.2
1,742,589 + OKGIIK_07875 0.17 +0.0
1,742,589 + OKGIIK_07875 0.17 -1.7
1,742,589 + OKGIIK_07875 0.17 -2.1
1,742,589 + OKGIIK_07875 0.17 -0.2
1,742,589 + OKGIIK_07875 0.17 +0.2
1,742,589 + OKGIIK_07875 0.17 +0.9
1,742,589 + OKGIIK_07875 0.17 -0.3
1,742,589 + OKGIIK_07875 0.17 -1.0
1,742,589 + OKGIIK_07875 0.17 -1.0
1,742,589 + OKGIIK_07875 0.17 +1.3
1,742,589 + OKGIIK_07875 0.17 -0.4
1,742,589 + OKGIIK_07875 0.17 -0.6
1,742,589 + OKGIIK_07875 0.17 +0.1
1,742,589 + OKGIIK_07875 0.17 -0.4
1,742,589 + OKGIIK_07875 0.17 -2.4
1,742,589 + OKGIIK_07875 0.17 -1.0
1,742,589 + OKGIIK_07875 0.17 +0.0
1,742,589 + OKGIIK_07875 0.17 +0.3
1,742,590 - OKGIIK_07875 0.17 -0.4
1,742,590 - OKGIIK_07875 0.17 +0.6
1,742,590 - OKGIIK_07875 0.17 -0.4
1,742,590 - OKGIIK_07875 0.17 -0.4
1,742,590 - OKGIIK_07875 0.17 +1.0
1,742,590 - OKGIIK_07875 0.17 -0.5
1,742,590 - OKGIIK_07875 0.17 -1.6
1,742,590 - OKGIIK_07875 0.17 +0.4
1,742,590 - OKGIIK_07875 0.17 +0.5
1,742,590 - OKGIIK_07875 0.17 +0.0
1,742,590 - OKGIIK_07875 0.17 -1.2
1,742,590 - OKGIIK_07875 0.17 +1.3
1,742,590 - OKGIIK_07875 0.17 -0.6
1,742,590 - OKGIIK_07875 0.17 -1.4
1,742,590 - OKGIIK_07875 0.17 -1.4
1,742,590 - OKGIIK_07875 0.17 +0.1
1,742,590 - OKGIIK_07875 0.17 +0.2
1,742,590 - OKGIIK_07875 0.17 -0.3
1,742,590 - OKGIIK_07875 0.17 -0.1
1,742,590 - OKGIIK_07875 0.17 -0.4
1,742,590 - OKGIIK_07875 0.17 +1.4
1,742,613 + OKGIIK_07875 0.23 -0.7
1,742,613 + OKGIIK_07875 0.23 -0.6
1,742,613 + OKGIIK_07875 0.23 -1.4
1,742,614 - OKGIIK_07875 0.23 -0.0
1,742,614 - OKGIIK_07875 0.23 +1.0
1,742,614 - OKGIIK_07875 0.23 +0.0
1,742,694 + OKGIIK_07875 0.44 -0.4
1,742,694 + OKGIIK_07875 0.44 -0.6
1,742,694 + OKGIIK_07875 0.44 -0.9
1,742,694 + OKGIIK_07875 0.44 +0.6
1,742,695 - OKGIIK_07875 0.44 -0.9
1,742,695 - OKGIIK_07875 0.44 +0.2
1,742,695 - OKGIIK_07875 0.44 -2.1
1,742,695 - OKGIIK_07875 0.44 +0.0
1,742,695 - OKGIIK_07875 0.44 -1.0
1,742,695 - OKGIIK_07875 0.44 +0.0
1,742,695 - OKGIIK_07875 0.44 +0.4
1,742,695 - OKGIIK_07875 0.44 -1.9
1,742,799 + OKGIIK_07875 0.71 -0.3
1,742,799 + OKGIIK_07875 0.71 -1.3
1,742,799 + OKGIIK_07875 0.71 +0.0
1,742,799 + OKGIIK_07875 0.71 +0.3
1,742,799 + OKGIIK_07875 0.71 -1.4
1,742,799 + OKGIIK_07875 0.71 +0.5
1,742,799 + OKGIIK_07875 0.71 -2.2
1,742,799 + OKGIIK_07875 0.71 +0.0
1,742,800 - OKGIIK_07875 0.72 +1.8
1,742,800 - OKGIIK_07875 0.72 -0.3
1,742,800 - OKGIIK_07875 0.72 +0.2
1,742,800 - OKGIIK_07875 0.72 +1.6
1,742,800 - OKGIIK_07875 0.72 -0.7
1,742,800 - OKGIIK_07875 0.72 -0.6
1,742,800 - OKGIIK_07875 0.72 +1.8
1,742,800 - OKGIIK_07875 0.72 +0.6
1,742,800 - OKGIIK_07875 0.72 -1.0
1,742,800 - OKGIIK_07875 0.72 -0.4
1,742,800 - OKGIIK_07875 0.72 +0.6
1,742,800 - OKGIIK_07875 0.72 -2.2
1,742,800 - OKGIIK_07875 0.72 +0.4
1,742,800 - OKGIIK_07875 0.72 +0.2
1,742,808 + OKGIIK_07875 0.74 -2.1
1,742,808 + OKGIIK_07875 0.74 -1.0
1,742,809 - OKGIIK_07875 0.74 -0.7
1,742,809 - OKGIIK_07875 0.74 -0.4
1,742,809 - OKGIIK_07875 0.74 +1.7
1,742,835 + OKGIIK_07875 0.81 +1.9
1,742,835 + OKGIIK_07875 0.81 -0.6
1,742,835 + OKGIIK_07875 0.81 -2.1
1,742,835 + OKGIIK_07875 0.81 -0.5
1,742,835 + OKGIIK_07875 0.81 -1.4
1,742,835 + OKGIIK_07875 0.81 -1.1
1,742,835 + OKGIIK_07875 0.81 +0.9
1,742,836 - OKGIIK_07875 0.81 -1.3
1,742,836 - OKGIIK_07875 0.81 +1.3
1,742,836 - OKGIIK_07875 0.81 -1.3
1,742,836 - OKGIIK_07875 0.81 -1.0
1,742,836 - OKGIIK_07875 0.81 -0.4
1,742,836 - OKGIIK_07875 0.81 +1.0
1,742,836 - OKGIIK_07875 0.81 +1.6
1,742,836 - OKGIIK_07875 0.81 -0.8
1,742,836 - OKGIIK_07875 0.81 +0.1
1,742,836 - OKGIIK_07875 0.81 +0.6
1,742,908 + -1.7
1,742,908 + -0.5
1,742,909 - +1.1
1,742,909 - -0.4
1,742,909 - -0.7
1,742,909 - +0.4
1,742,939 + -1.9
1,742,939 + -1.9
1,742,939 + +1.1
1,742,940 - +0.5
1,742,940 - -0.1
1,742,940 - -0.4
1,742,940 - -0.3
1,742,940 - +0.6
1,742,940 - +0.5
1,742,940 - +0.9
1,742,940 - -1.6
1,742,940 - -2.3
1,742,940 - -0.1
1,742,940 - -1.7
1,742,995 + -0.1
1,742,995 + -0.7
1,742,995 + -1.2
1,742,996 - -0.6
1,742,996 - -0.8
1,742,996 - +0.6
1,742,996 - +1.9
1,742,996 - -0.4

Or see this region's nucleotide sequence