Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt serC and pheA are separated by 75 nucleotides pheA and aroA overlap by 4 nucleotides
OKGIIK_06910: serC - 3-phosphoserine/phosphohydroxythreonine transaminase, at 1,535,150 to 1,536,238
serC
OKGIIK_06915: pheA - prephenate dehydratase, at 1,536,314 to 1,537,402
pheA
OKGIIK_06920: aroA - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,537,399 to 1,538,709
aroA
Position (kb) 1536
1537
1538 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1535.337 kb on + strand, within serC at 1535.338 kb on - strand, within serC at 1535.348 kb on + strand, within serC at 1535.348 kb on + strand, within serC at 1535.348 kb on + strand, within serC at 1535.348 kb on + strand, within serC at 1535.349 kb on - strand, within serC at 1535.349 kb on - strand, within serC at 1535.349 kb on - strand, within serC at 1535.349 kb on - strand, within serC at 1535.435 kb on + strand, within serC at 1535.436 kb on - strand, within serC at 1535.436 kb on - strand, within serC at 1535.436 kb on - strand, within serC at 1535.486 kb on + strand, within serC at 1535.487 kb on - strand, within serC at 1535.487 kb on - strand, within serC at 1535.487 kb on - strand, within serC at 1535.528 kb on + strand, within serC at 1535.529 kb on - strand, within serC at 1535.579 kb on + strand, within serC at 1535.579 kb on + strand, within serC at 1535.579 kb on + strand, within serC at 1535.579 kb on + strand, within serC at 1535.579 kb on + strand, within serC at 1535.579 kb on + strand, within serC at 1535.579 kb on + strand, within serC at 1535.579 kb on + strand, within serC at 1535.579 kb on + strand, within serC at 1535.580 kb on - strand, within serC at 1535.580 kb on - strand, within serC at 1535.580 kb on - strand, within serC at 1535.580 kb on - strand, within serC at 1535.588 kb on + strand, within serC at 1535.588 kb on + strand, within serC at 1535.588 kb on + strand, within serC at 1535.588 kb on + strand, within serC at 1535.588 kb on + strand, within serC at 1535.588 kb on + strand, within serC at 1535.589 kb on - strand, within serC at 1535.589 kb on - strand, within serC at 1535.589 kb on - strand, within serC at 1535.589 kb on - strand, within serC at 1535.589 kb on - strand, within serC at 1535.589 kb on - strand, within serC at 1535.589 kb on - strand, within serC at 1535.723 kb on + strand, within serC at 1535.723 kb on + strand, within serC at 1535.724 kb on - strand, within serC at 1535.724 kb on - strand, within serC at 1535.724 kb on - strand, within serC at 1535.724 kb on - strand, within serC at 1535.724 kb on - strand, within serC at 1535.724 kb on - strand, within serC at 1535.885 kb on + strand, within serC at 1535.885 kb on + strand, within serC at 1535.885 kb on + strand, within serC at 1535.885 kb on + strand, within serC at 1535.885 kb on + strand, within serC at 1535.885 kb on + strand, within serC at 1535.886 kb on - strand, within serC at 1535.886 kb on - strand, within serC at 1535.886 kb on - strand, within serC at 1535.886 kb on - strand, within serC at 1535.886 kb on - strand, within serC at 1535.886 kb on - strand, within serC at 1535.937 kb on - strand, within serC at 1536.003 kb on - strand, within serC at 1536.003 kb on - strand, within serC at 1536.003 kb on - strand, within serC at 1536.005 kb on + strand, within serC at 1536.164 kb on + strand at 1536.164 kb on + strand at 1536.164 kb on + strand at 1536.165 kb on - strand at 1536.458 kb on + strand, within pheA at 1536.458 kb on + strand, within pheA at 1536.458 kb on + strand, within pheA at 1536.458 kb on + strand, within pheA at 1536.458 kb on + strand, within pheA at 1536.459 kb on - strand, within pheA at 1536.696 kb on + strand, within pheA at 1536.696 kb on + strand, within pheA at 1536.696 kb on + strand, within pheA at 1536.697 kb on - strand, within pheA at 1536.697 kb on - strand, within pheA at 1536.697 kb on - strand, within pheA at 1536.805 kb on + strand, within pheA at 1536.805 kb on + strand, within pheA at 1536.805 kb on + strand, within pheA at 1536.805 kb on + strand, within pheA at 1536.805 kb on + strand, within pheA at 1536.805 kb on + strand, within pheA at 1536.806 kb on - strand, within pheA at 1536.806 kb on - strand, within pheA at 1536.887 kb on + strand, within pheA at 1537.193 kb on + strand, within pheA at 1537.193 kb on + strand, within pheA at 1537.193 kb on + strand, within pheA at 1537.193 kb on + strand, within pheA at 1537.220 kb on + strand, within pheA at 1537.277 kb on + strand, within pheA at 1537.278 kb on - strand, within pheA at 1537.278 kb on - strand, within pheA at 1537.945 kb on + strand, within aroA at 1537.996 kb on - strand, within aroA at 1538.307 kb on - strand, within aroA
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 1,535,337 + serC OKGIIK_06910 0.17 -0.2 1,535,338 - serC OKGIIK_06910 0.17 -0.7 1,535,348 + serC OKGIIK_06910 0.18 -0.6 1,535,348 + serC OKGIIK_06910 0.18 -0.4 1,535,348 + serC OKGIIK_06910 0.18 -0.9 1,535,348 + serC OKGIIK_06910 0.18 -0.4 1,535,349 - serC OKGIIK_06910 0.18 +0.0 1,535,349 - serC OKGIIK_06910 0.18 -0.4 1,535,349 - serC OKGIIK_06910 0.18 -0.7 1,535,349 - serC OKGIIK_06910 0.18 -1.5 1,535,435 + serC OKGIIK_06910 0.26 -0.2 1,535,436 - serC OKGIIK_06910 0.26 -0.7 1,535,436 - serC OKGIIK_06910 0.26 -1.2 1,535,436 - serC OKGIIK_06910 0.26 -3.4 1,535,486 + serC OKGIIK_06910 0.31 -1.2 1,535,487 - serC OKGIIK_06910 0.31 +0.0 1,535,487 - serC OKGIIK_06910 0.31 -0.3 1,535,487 - serC OKGIIK_06910 0.31 -1.6 1,535,528 + serC OKGIIK_06910 0.35 +0.3 1,535,529 - serC OKGIIK_06910 0.35 -0.7 1,535,579 + serC OKGIIK_06910 0.39 -0.4 1,535,579 + serC OKGIIK_06910 0.39 -1.1 1,535,579 + serC OKGIIK_06910 0.39 -1.9 1,535,579 + serC OKGIIK_06910 0.39 -0.2 1,535,579 + serC OKGIIK_06910 0.39 -0.4 1,535,579 + serC OKGIIK_06910 0.39 -1.5 1,535,579 + serC OKGIIK_06910 0.39 +0.8 1,535,579 + serC OKGIIK_06910 0.39 -1.0 1,535,579 + serC OKGIIK_06910 0.39 +0.3 1,535,580 - serC OKGIIK_06910 0.39 +0.3 1,535,580 - serC OKGIIK_06910 0.39 +0.6 1,535,580 - serC OKGIIK_06910 0.39 -0.2 1,535,580 - serC OKGIIK_06910 0.39 -0.7 1,535,588 + serC OKGIIK_06910 0.40 +0.8 1,535,588 + serC OKGIIK_06910 0.40 -0.4 1,535,588 + serC OKGIIK_06910 0.40 +0.2 1,535,588 + serC OKGIIK_06910 0.40 +0.1 1,535,588 + serC OKGIIK_06910 0.40 -1.0 1,535,588 + serC OKGIIK_06910 0.40 -0.4 1,535,589 - serC OKGIIK_06910 0.40 -0.2 1,535,589 - serC OKGIIK_06910 0.40 -0.7 1,535,589 - serC OKGIIK_06910 0.40 -0.3 1,535,589 - serC OKGIIK_06910 0.40 -0.7 1,535,589 - serC OKGIIK_06910 0.40 -1.2 1,535,589 - serC OKGIIK_06910 0.40 -1.6 1,535,589 - serC OKGIIK_06910 0.40 +0.0 1,535,723 + serC OKGIIK_06910 0.53 +0.5 1,535,723 + serC OKGIIK_06910 0.53 -0.4 1,535,724 - serC OKGIIK_06910 0.53 -2.0 1,535,724 - serC OKGIIK_06910 0.53 -1.2 1,535,724 - serC OKGIIK_06910 0.53 -2.1 1,535,724 - serC OKGIIK_06910 0.53 -1.2 1,535,724 - serC OKGIIK_06910 0.53 -0.1 1,535,724 - serC OKGIIK_06910 0.53 -0.7 1,535,885 + serC OKGIIK_06910 0.67 -1.9 1,535,885 + serC OKGIIK_06910 0.67 -1.0 1,535,885 + serC OKGIIK_06910 0.67 -2.1 1,535,885 + serC OKGIIK_06910 0.67 +0.9 1,535,885 + serC OKGIIK_06910 0.67 -0.7 1,535,885 + serC OKGIIK_06910 0.67 +2.2 1,535,886 - serC OKGIIK_06910 0.68 -0.3 1,535,886 - serC OKGIIK_06910 0.68 -0.4 1,535,886 - serC OKGIIK_06910 0.68 +0.1 1,535,886 - serC OKGIIK_06910 0.68 -0.9 1,535,886 - serC OKGIIK_06910 0.68 -2.4 1,535,886 - serC OKGIIK_06910 0.68 -1.0 1,535,937 - serC OKGIIK_06910 0.72 -0.7 1,536,003 - serC OKGIIK_06910 0.78 -2.2 1,536,003 - serC OKGIIK_06910 0.78 -0.9 1,536,003 - serC OKGIIK_06910 0.78 -0.5 1,536,005 + serC OKGIIK_06910 0.79 +0.6 1,536,164 + -1.0 1,536,164 + -0.6 1,536,164 + -1.4 1,536,165 - -0.3 1,536,458 + pheA OKGIIK_06915 0.13 -1.4 1,536,458 + pheA OKGIIK_06915 0.13 -1.6 1,536,458 + pheA OKGIIK_06915 0.13 -1.1 1,536,458 + pheA OKGIIK_06915 0.13 -0.3 1,536,458 + pheA OKGIIK_06915 0.13 -0.1 1,536,459 - pheA OKGIIK_06915 0.13 -0.2 1,536,696 + pheA OKGIIK_06915 0.35 +0.3 1,536,696 + pheA OKGIIK_06915 0.35 +0.4 1,536,696 + pheA OKGIIK_06915 0.35 -0.7 1,536,697 - pheA OKGIIK_06915 0.35 -0.9 1,536,697 - pheA OKGIIK_06915 0.35 -1.0 1,536,697 - pheA OKGIIK_06915 0.35 -1.4 1,536,805 + pheA OKGIIK_06915 0.45 -0.1 1,536,805 + pheA OKGIIK_06915 0.45 -0.3 1,536,805 + pheA OKGIIK_06915 0.45 +0.6 1,536,805 + pheA OKGIIK_06915 0.45 -0.6 1,536,805 + pheA OKGIIK_06915 0.45 -0.1 1,536,805 + pheA OKGIIK_06915 0.45 -1.8 1,536,806 - pheA OKGIIK_06915 0.45 +1.0 1,536,806 - pheA OKGIIK_06915 0.45 -1.9 1,536,887 + pheA OKGIIK_06915 0.53 -1.0 1,537,193 + pheA OKGIIK_06915 0.81 -2.2 1,537,193 + pheA OKGIIK_06915 0.81 -0.4 1,537,193 + pheA OKGIIK_06915 0.81 -1.1 1,537,193 + pheA OKGIIK_06915 0.81 +0.2 1,537,220 + pheA OKGIIK_06915 0.83 -1.7 1,537,277 + pheA OKGIIK_06915 0.88 -0.2 1,537,278 - pheA OKGIIK_06915 0.89 -1.9 1,537,278 - pheA OKGIIK_06915 0.89 -1.2 1,537,945 + aroA OKGIIK_06920 0.42 -2.0 1,537,996 - aroA OKGIIK_06920 0.46 -0.7 1,538,307 - aroA OKGIIK_06920 0.69 +0.0
Or see this region's nucleotide sequence