Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_06880 and clpS are separated by 124 nucleotides clpS and clpA are separated by 67 nucleotides clpA and infA are separated by 110 nucleotides infA and OKGIIK_06900 are separated by 107 nucleotides OKGIIK_06900 and OKGIIK_06905 are separated by 89 nucleotides
OKGIIK_06880: OKGIIK_06880 - Phosphatase NudJ, at 1,530,226 to 1,530,711
_06880
OKGIIK_06885: clpS - ATP-dependent Clp protease adapter ClpS, at 1,530,836 to 1,531,162
clpS
OKGIIK_06890: clpA - ATP-dependent Clp protease ATP-binding subunit ClpA, at 1,531,230 to 1,533,500
clpA
OKGIIK_06895: infA - translation initiation factor IF-1, at 1,533,611 to 1,533,829
infA
OKGIIK_06900: OKGIIK_06900 - Polyhydroxyalkanoic acid synthase, at 1,533,937 to 1,534,212
_06900
OKGIIK_06905: OKGIIK_06905 - Forkhead-associated protein, at 1,534,302 to 1,535,069
_06905
Position (kb) 1531
1532
1533
1534 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1530.633 kb on - strand, within OKGIIK_06880 at 1530.799 kb on + strand at 1530.799 kb on + strand at 1530.799 kb on + strand at 1530.799 kb on + strand at 1530.800 kb on - strand at 1530.800 kb on - strand at 1530.800 kb on - strand at 1530.801 kb on + strand at 1530.801 kb on + strand at 1530.801 kb on + strand at 1530.801 kb on + strand at 1530.801 kb on + strand at 1530.802 kb on - strand at 1530.802 kb on - strand at 1530.802 kb on - strand at 1530.802 kb on - strand at 1530.802 kb on - strand at 1530.802 kb on - strand at 1530.802 kb on - strand at 1530.822 kb on - strand at 1530.822 kb on - strand at 1530.822 kb on - strand at 1530.822 kb on - strand at 1531.095 kb on + strand, within clpS at 1531.095 kb on + strand, within clpS at 1531.095 kb on + strand, within clpS at 1531.096 kb on - strand, within clpS at 1531.096 kb on - strand, within clpS at 1531.096 kb on - strand, within clpS at 1531.112 kb on + strand, within clpS at 1531.112 kb on + strand, within clpS at 1531.112 kb on + strand, within clpS at 1531.113 kb on - strand, within clpS at 1531.113 kb on - strand, within clpS at 1531.113 kb on - strand, within clpS at 1531.113 kb on - strand, within clpS at 1531.113 kb on - strand, within clpS at 1531.147 kb on + strand at 1531.147 kb on + strand at 1531.148 kb on - strand at 1531.148 kb on - strand at 1531.148 kb on - strand at 1531.269 kb on + strand at 1531.269 kb on + strand at 1531.269 kb on + strand at 1531.269 kb on + strand at 1531.270 kb on - strand at 1531.270 kb on - strand at 1531.270 kb on - strand at 1531.270 kb on - strand at 1531.270 kb on - strand at 1531.270 kb on - strand at 1531.270 kb on - strand at 1531.270 kb on - strand at 1531.270 kb on - strand at 1531.270 kb on - strand at 1531.270 kb on - strand at 1531.270 kb on - strand at 1531.458 kb on - strand, within clpA at 1531.503 kb on + strand, within clpA at 1531.503 kb on + strand, within clpA at 1531.503 kb on + strand, within clpA at 1531.503 kb on + strand, within clpA at 1531.504 kb on - strand, within clpA at 1531.504 kb on - strand, within clpA at 1531.590 kb on + strand, within clpA at 1531.590 kb on + strand, within clpA at 1531.590 kb on + strand, within clpA at 1531.590 kb on + strand, within clpA at 1531.590 kb on + strand, within clpA at 1531.590 kb on + strand, within clpA at 1531.590 kb on + strand, within clpA at 1531.591 kb on - strand, within clpA at 1531.591 kb on - strand, within clpA at 1531.591 kb on - strand, within clpA at 1531.591 kb on - strand, within clpA at 1531.591 kb on - strand, within clpA at 1531.591 kb on - strand, within clpA at 1531.591 kb on - strand, within clpA at 1531.591 kb on - strand, within clpA at 1531.635 kb on + strand, within clpA at 1531.635 kb on + strand, within clpA at 1531.635 kb on + strand, within clpA at 1531.635 kb on + strand, within clpA at 1531.636 kb on - strand, within clpA at 1531.636 kb on - strand, within clpA at 1531.866 kb on + strand, within clpA at 1531.866 kb on + strand, within clpA at 1531.866 kb on + strand, within clpA at 1531.866 kb on + strand, within clpA at 1531.866 kb on + strand, within clpA at 1531.866 kb on + strand, within clpA at 1531.866 kb on + strand, within clpA at 1531.866 kb on + strand, within clpA at 1531.867 kb on - strand, within clpA at 1531.867 kb on - strand, within clpA at 1531.867 kb on - strand, within clpA at 1531.867 kb on - strand, within clpA at 1531.867 kb on - strand, within clpA at 1531.867 kb on - strand, within clpA at 1531.867 kb on - strand, within clpA at 1531.867 kb on - strand, within clpA at 1531.867 kb on - strand, within clpA at 1531.867 kb on - strand, within clpA at 1532.007 kb on + strand, within clpA at 1532.007 kb on + strand, within clpA at 1532.211 kb on + strand, within clpA at 1532.349 kb on + strand, within clpA at 1532.349 kb on + strand, within clpA at 1532.349 kb on + strand, within clpA at 1532.350 kb on - strand, within clpA at 1532.514 kb on + strand, within clpA at 1532.514 kb on + strand, within clpA at 1532.514 kb on + strand, within clpA at 1532.514 kb on + strand, within clpA at 1532.514 kb on + strand, within clpA at 1532.514 kb on + strand, within clpA at 1532.514 kb on + strand, within clpA at 1532.514 kb on + strand, within clpA at 1532.514 kb on + strand, within clpA at 1532.514 kb on + strand, within clpA at 1532.514 kb on + strand, within clpA at 1532.514 kb on + strand, within clpA at 1532.514 kb on + strand, within clpA at 1532.514 kb on + strand, within clpA at 1532.514 kb on + strand, within clpA at 1532.515 kb on - strand, within clpA at 1532.515 kb on - strand, within clpA at 1532.515 kb on - strand, within clpA at 1532.515 kb on - strand, within clpA at 1532.515 kb on - strand, within clpA at 1532.515 kb on - strand, within clpA at 1532.515 kb on - strand, within clpA at 1532.515 kb on - strand, within clpA at 1532.515 kb on - strand, within clpA at 1532.515 kb on - strand, within clpA at 1532.802 kb on + strand, within clpA at 1532.802 kb on + strand, within clpA at 1532.802 kb on + strand, within clpA at 1532.802 kb on + strand, within clpA at 1532.802 kb on + strand, within clpA at 1532.802 kb on + strand, within clpA at 1532.802 kb on + strand, within clpA at 1532.803 kb on - strand, within clpA at 1532.803 kb on - strand, within clpA at 1532.803 kb on - strand, within clpA at 1532.803 kb on - strand, within clpA at 1532.803 kb on - strand, within clpA at 1532.803 kb on - strand, within clpA at 1532.803 kb on - strand, within clpA at 1532.850 kb on + strand, within clpA at 1532.850 kb on + strand, within clpA at 1532.850 kb on + strand, within clpA at 1532.850 kb on + strand, within clpA at 1532.850 kb on + strand, within clpA at 1532.851 kb on - strand, within clpA at 1533.499 kb on - strand at 1533.499 kb on - strand at 1533.612 kb on + strand at 1533.612 kb on + strand at 1533.612 kb on + strand at 1533.612 kb on + strand at 1533.612 kb on + strand at 1533.612 kb on + strand at 1533.612 kb on + strand at 1533.612 kb on + strand at 1533.612 kb on + strand at 1533.612 kb on + strand at 1533.612 kb on + strand at 1533.612 kb on + strand at 1533.612 kb on + strand at 1533.612 kb on + strand at 1533.613 kb on - strand at 1533.902 kb on - strand at 1533.902 kb on - strand at 1534.241 kb on + strand at 1534.241 kb on + strand at 1534.242 kb on - strand at 1534.242 kb on - strand at 1534.242 kb on - strand at 1534.242 kb on - strand at 1534.242 kb on - strand at 1534.270 kb on + strand at 1534.270 kb on + strand at 1534.270 kb on + strand at 1534.270 kb on + strand at 1534.270 kb on + strand at 1534.270 kb on + strand at 1534.270 kb on + strand at 1534.270 kb on + strand at 1534.271 kb on - strand at 1534.271 kb on - strand at 1534.271 kb on - strand at 1534.271 kb on - strand at 1534.271 kb on - strand at 1534.271 kb on - strand at 1534.271 kb on - strand at 1534.271 kb on - strand at 1534.271 kb on - strand at 1534.271 kb on - strand at 1534.271 kb on - strand at 1534.271 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 1,530,633 - OKGIIK_06880 0.84 -2.1 1,530,799 + +0.4 1,530,799 + -1.9 1,530,799 + -0.3 1,530,799 + -2.8 1,530,800 - -0.7 1,530,800 - -0.7 1,530,800 - -1.5 1,530,801 + -0.9 1,530,801 + -0.8 1,530,801 + +0.4 1,530,801 + -0.6 1,530,801 + -1.2 1,530,802 - +0.2 1,530,802 - +0.3 1,530,802 - +0.6 1,530,802 - +1.4 1,530,802 - +0.3 1,530,802 - +0.1 1,530,802 - -1.1 1,530,822 - -0.7 1,530,822 - -1.3 1,530,822 - -0.9 1,530,822 - +0.5 1,531,095 + clpS OKGIIK_06885 0.79 -2.0 1,531,095 + clpS OKGIIK_06885 0.79 +1.4 1,531,095 + clpS OKGIIK_06885 0.79 +0.3 1,531,096 - clpS OKGIIK_06885 0.80 -0.3 1,531,096 - clpS OKGIIK_06885 0.80 +0.0 1,531,096 - clpS OKGIIK_06885 0.80 +0.9 1,531,112 + clpS OKGIIK_06885 0.84 -2.0 1,531,112 + clpS OKGIIK_06885 0.84 -1.0 1,531,112 + clpS OKGIIK_06885 0.84 +0.3 1,531,113 - clpS OKGIIK_06885 0.85 +0.2 1,531,113 - clpS OKGIIK_06885 0.85 -1.2 1,531,113 - clpS OKGIIK_06885 0.85 -1.2 1,531,113 - clpS OKGIIK_06885 0.85 -0.4 1,531,113 - clpS OKGIIK_06885 0.85 -1.6 1,531,147 + +0.6 1,531,147 + -1.4 1,531,148 - +0.6 1,531,148 - -1.9 1,531,148 - -0.1 1,531,269 + +0.0 1,531,269 + -0.3 1,531,269 + -1.8 1,531,269 + -0.7 1,531,270 - -1.5 1,531,270 - +1.0 1,531,270 - -0.2 1,531,270 - +0.9 1,531,270 - -0.6 1,531,270 - -1.4 1,531,270 - -1.4 1,531,270 - -1.2 1,531,270 - -2.4 1,531,270 - -1.2 1,531,270 - -1.2 1,531,270 - -1.9 1,531,458 - clpA OKGIIK_06890 0.10 -2.5 1,531,503 + clpA OKGIIK_06890 0.12 -1.2 1,531,503 + clpA OKGIIK_06890 0.12 -1.7 1,531,503 + clpA OKGIIK_06890 0.12 -2.1 1,531,503 + clpA OKGIIK_06890 0.12 +0.0 1,531,504 - clpA OKGIIK_06890 0.12 -0.7 1,531,504 - clpA OKGIIK_06890 0.12 +0.1 1,531,590 + clpA OKGIIK_06890 0.16 -1.3 1,531,590 + clpA OKGIIK_06890 0.16 -2.2 1,531,590 + clpA OKGIIK_06890 0.16 -0.1 1,531,590 + clpA OKGIIK_06890 0.16 -1.9 1,531,590 + clpA OKGIIK_06890 0.16 -2.2 1,531,590 + clpA OKGIIK_06890 0.16 -1.2 1,531,590 + clpA OKGIIK_06890 0.16 -0.6 1,531,591 - clpA OKGIIK_06890 0.16 -0.2 1,531,591 - clpA OKGIIK_06890 0.16 -1.1 1,531,591 - clpA OKGIIK_06890 0.16 -1.3 1,531,591 - clpA OKGIIK_06890 0.16 -0.4 1,531,591 - clpA OKGIIK_06890 0.16 -3.3 1,531,591 - clpA OKGIIK_06890 0.16 -1.4 1,531,591 - clpA OKGIIK_06890 0.16 +0.3 1,531,591 - clpA OKGIIK_06890 0.16 -1.2 1,531,635 + clpA OKGIIK_06890 0.18 -1.6 1,531,635 + clpA OKGIIK_06890 0.18 +0.1 1,531,635 + clpA OKGIIK_06890 0.18 -1.0 1,531,635 + clpA OKGIIK_06890 0.18 +0.3 1,531,636 - clpA OKGIIK_06890 0.18 -1.9 1,531,636 - clpA OKGIIK_06890 0.18 -0.6 1,531,866 + clpA OKGIIK_06890 0.28 -1.9 1,531,866 + clpA OKGIIK_06890 0.28 -1.7 1,531,866 + clpA OKGIIK_06890 0.28 -1.2 1,531,866 + clpA OKGIIK_06890 0.28 -1.2 1,531,866 + clpA OKGIIK_06890 0.28 +0.2 1,531,866 + clpA OKGIIK_06890 0.28 +0.4 1,531,866 + clpA OKGIIK_06890 0.28 -1.6 1,531,866 + clpA OKGIIK_06890 0.28 -0.6 1,531,867 - clpA OKGIIK_06890 0.28 +0.6 1,531,867 - clpA OKGIIK_06890 0.28 -1.6 1,531,867 - clpA OKGIIK_06890 0.28 -0.4 1,531,867 - clpA OKGIIK_06890 0.28 -0.6 1,531,867 - clpA OKGIIK_06890 0.28 +0.6 1,531,867 - clpA OKGIIK_06890 0.28 +0.6 1,531,867 - clpA OKGIIK_06890 0.28 -2.0 1,531,867 - clpA OKGIIK_06890 0.28 +0.3 1,531,867 - clpA OKGIIK_06890 0.28 -0.7 1,531,867 - clpA OKGIIK_06890 0.28 -0.9 1,532,007 + clpA OKGIIK_06890 0.34 -1.2 1,532,007 + clpA OKGIIK_06890 0.34 -0.1 1,532,211 + clpA OKGIIK_06890 0.43 +0.0 1,532,349 + clpA OKGIIK_06890 0.49 -1.1 1,532,349 + clpA OKGIIK_06890 0.49 -0.4 1,532,349 + clpA OKGIIK_06890 0.49 -1.6 1,532,350 - clpA OKGIIK_06890 0.49 -1.6 1,532,514 + clpA OKGIIK_06890 0.57 +0.0 1,532,514 + clpA OKGIIK_06890 0.57 -0.4 1,532,514 + clpA OKGIIK_06890 0.57 +1.3 1,532,514 + clpA OKGIIK_06890 0.57 -0.4 1,532,514 + clpA OKGIIK_06890 0.57 -1.2 1,532,514 + clpA OKGIIK_06890 0.57 -1.0 1,532,514 + clpA OKGIIK_06890 0.57 -0.7 1,532,514 + clpA OKGIIK_06890 0.57 -2.0 1,532,514 + clpA OKGIIK_06890 0.57 -1.1 1,532,514 + clpA OKGIIK_06890 0.57 -2.9 1,532,514 + clpA OKGIIK_06890 0.57 -2.9 1,532,514 + clpA OKGIIK_06890 0.57 -1.2 1,532,514 + clpA OKGIIK_06890 0.57 +0.1 1,532,514 + clpA OKGIIK_06890 0.57 -1.7 1,532,514 + clpA OKGIIK_06890 0.57 +1.2 1,532,515 - clpA OKGIIK_06890 0.57 -1.9 1,532,515 - clpA OKGIIK_06890 0.57 -0.4 1,532,515 - clpA OKGIIK_06890 0.57 -0.7 1,532,515 - clpA OKGIIK_06890 0.57 +1.3 1,532,515 - clpA OKGIIK_06890 0.57 -1.2 1,532,515 - clpA OKGIIK_06890 0.57 +0.6 1,532,515 - clpA OKGIIK_06890 0.57 +0.6 1,532,515 - clpA OKGIIK_06890 0.57 -1.0 1,532,515 - clpA OKGIIK_06890 0.57 -0.9 1,532,515 - clpA OKGIIK_06890 0.57 +1.3 1,532,802 + clpA OKGIIK_06890 0.69 -2.3 1,532,802 + clpA OKGIIK_06890 0.69 +0.4 1,532,802 + clpA OKGIIK_06890 0.69 -0.2 1,532,802 + clpA OKGIIK_06890 0.69 -0.9 1,532,802 + clpA OKGIIK_06890 0.69 -1.4 1,532,802 + clpA OKGIIK_06890 0.69 -0.9 1,532,802 + clpA OKGIIK_06890 0.69 +1.2 1,532,803 - clpA OKGIIK_06890 0.69 -1.4 1,532,803 - clpA OKGIIK_06890 0.69 -2.5 1,532,803 - clpA OKGIIK_06890 0.69 +0.6 1,532,803 - clpA OKGIIK_06890 0.69 +1.0 1,532,803 - clpA OKGIIK_06890 0.69 -2.4 1,532,803 - clpA OKGIIK_06890 0.69 -0.3 1,532,803 - clpA OKGIIK_06890 0.69 -1.0 1,532,850 + clpA OKGIIK_06890 0.71 -1.0 1,532,850 + clpA OKGIIK_06890 0.71 -0.7 1,532,850 + clpA OKGIIK_06890 0.71 +0.0 1,532,850 + clpA OKGIIK_06890 0.71 -0.0 1,532,850 + clpA OKGIIK_06890 0.71 -0.4 1,532,851 - clpA OKGIIK_06890 0.71 -1.1 1,533,499 - -1.0 1,533,499 - -0.7 1,533,612 + -1.4 1,533,612 + +0.2 1,533,612 + -0.6 1,533,612 + +0.6 1,533,612 + -0.3 1,533,612 + -0.5 1,533,612 + -0.1 1,533,612 + -1.4 1,533,612 + -1.6 1,533,612 + -0.4 1,533,612 + -2.0 1,533,612 + +1.1 1,533,612 + -0.4 1,533,612 + +0.0 1,533,613 - -1.8 1,533,902 - +0.3 1,533,902 - +0.6 1,534,241 + -0.4 1,534,241 + -1.4 1,534,242 - -1.2 1,534,242 - +0.0 1,534,242 - +0.4 1,534,242 - -1.3 1,534,242 - -0.4 1,534,270 + +0.0 1,534,270 + -0.3 1,534,270 + +0.3 1,534,270 + -0.5 1,534,270 + -1.4 1,534,270 + -1.7 1,534,270 + -1.1 1,534,270 + -0.7 1,534,271 - -0.9 1,534,271 - -0.4 1,534,271 - +1.2 1,534,271 - -0.7 1,534,271 - +1.5 1,534,271 - +0.7 1,534,271 - +0.3 1,534,271 - +0.1 1,534,271 - +0.3 1,534,271 - -0.7 1,534,271 - -0.5 1,534,271 - -0.6
Or see this region's nucleotide sequence