Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_04035

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_04030 and OKGIIK_04035 are separated by 24 nucleotidesOKGIIK_04035 and OKGIIK_04040 are separated by 4 nucleotides OKGIIK_04030: OKGIIK_04030 - Transporter, at 881,466 to 884,285 _04030 OKGIIK_04035: OKGIIK_04035 - DeoR/GlpR family DNA-binding transcription regulator, at 884,310 to 884,690 _04035 OKGIIK_04040: OKGIIK_04040 - Beta-galactosidase, at 884,695 to 886,419 _04040 Position (kb) 884 885Strain fitness (log2 ratio) -2 -1 0 1 2at 883.515 kb on + strand, within OKGIIK_04030at 883.677 kb on + strand, within OKGIIK_04030at 883.677 kb on + strand, within OKGIIK_04030at 883.677 kb on + strand, within OKGIIK_04030at 883.677 kb on + strand, within OKGIIK_04030at 883.677 kb on + strand, within OKGIIK_04030at 883.677 kb on + strand, within OKGIIK_04030at 883.705 kb on - strand, within OKGIIK_04030at 883.810 kb on - strand, within OKGIIK_04030at 883.821 kb on + strand, within OKGIIK_04030at 883.872 kb on + strand, within OKGIIK_04030at 883.872 kb on + strand, within OKGIIK_04030at 883.872 kb on + strand, within OKGIIK_04030at 883.873 kb on - strand, within OKGIIK_04030at 883.873 kb on - strand, within OKGIIK_04030at 883.873 kb on - strand, within OKGIIK_04030at 883.887 kb on + strand, within OKGIIK_04030at 883.887 kb on + strand, within OKGIIK_04030at 883.887 kb on + strand, within OKGIIK_04030at 883.888 kb on - strand, within OKGIIK_04030at 883.888 kb on - strand, within OKGIIK_04030at 883.888 kb on - strand, within OKGIIK_04030at 883.888 kb on - strand, within OKGIIK_04030at 883.929 kb on + strand, within OKGIIK_04030at 884.118 kb on + strandat 884.118 kb on + strandat 884.118 kb on + strandat 884.118 kb on + strandat 884.119 kb on - strandat 884.119 kb on - strandat 884.151 kb on + strandat 884.152 kb on - strandat 884.152 kb on - strandat 884.623 kb on + strand, within OKGIIK_04035at 884.624 kb on - strand, within OKGIIK_04035at 884.624 kb on - strand, within OKGIIK_04035at 884.767 kb on + strandat 884.768 kb on - strandat 884.768 kb on - strandat 884.768 kb on - strandat 884.824 kb on + strandat 884.824 kb on + strandat 884.824 kb on + strandat 884.824 kb on + strandat 884.824 kb on + strandat 884.825 kb on - strandat 884.825 kb on - strandat 884.825 kb on - strandat 884.825 kb on - strandat 884.825 kb on - strandat 884.825 kb on - strandat 884.825 kb on - strandat 884.909 kb on + strand, within OKGIIK_04040at 884.909 kb on + strand, within OKGIIK_04040at 884.910 kb on - strand, within OKGIIK_04040at 884.910 kb on - strand, within OKGIIK_04040at 884.935 kb on + strand, within OKGIIK_04040at 884.935 kb on + strand, within OKGIIK_04040at 884.936 kb on - strand, within OKGIIK_04040at 884.936 kb on - strand, within OKGIIK_04040at 884.936 kb on - strand, within OKGIIK_04040at 884.936 kb on - strand, within OKGIIK_04040at 884.936 kb on - strand, within OKGIIK_04040at 884.936 kb on - strand, within OKGIIK_04040at 884.936 kb on - strand, within OKGIIK_04040at 884.953 kb on + strand, within OKGIIK_04040at 884.953 kb on + strand, within OKGIIK_04040at 884.953 kb on + strand, within OKGIIK_04040at 884.953 kb on + strand, within OKGIIK_04040at 884.953 kb on + strand, within OKGIIK_04040at 884.953 kb on + strand, within OKGIIK_04040at 884.953 kb on + strand, within OKGIIK_04040at 884.953 kb on + strand, within OKGIIK_04040at 884.953 kb on + strand, within OKGIIK_04040at 884.954 kb on - strand, within OKGIIK_04040at 884.954 kb on - strand, within OKGIIK_04040at 884.954 kb on - strand, within OKGIIK_04040at 884.954 kb on - strand, within OKGIIK_04040at 884.954 kb on - strand, within OKGIIK_04040at 884.954 kb on - strand, within OKGIIK_04040at 884.954 kb on - strand, within OKGIIK_04040at 884.954 kb on - strand, within OKGIIK_04040at 884.954 kb on - strand, within OKGIIK_04040at 884.954 kb on - strand, within OKGIIK_04040at 884.955 kb on + strand, within OKGIIK_04040at 884.955 kb on + strand, within OKGIIK_04040at 884.955 kb on + strand, within OKGIIK_04040at 884.955 kb on + strand, within OKGIIK_04040at 884.955 kb on + strand, within OKGIIK_04040at 884.955 kb on + strand, within OKGIIK_04040at 884.956 kb on - strand, within OKGIIK_04040at 884.956 kb on - strand, within OKGIIK_04040at 884.956 kb on - strand, within OKGIIK_04040at 884.956 kb on - strand, within OKGIIK_04040at 884.956 kb on - strand, within OKGIIK_04040at 884.956 kb on - strand, within OKGIIK_04040at 884.956 kb on - strand, within OKGIIK_04040at 884.956 kb on - strand, within OKGIIK_04040at 884.956 kb on - strand, within OKGIIK_04040at 884.956 kb on - strand, within OKGIIK_04040at 884.975 kb on - strand, within OKGIIK_04040at 884.984 kb on + strand, within OKGIIK_04040at 884.985 kb on - strand, within OKGIIK_04040at 884.993 kb on - strand, within OKGIIK_04040at 884.993 kb on - strand, within OKGIIK_04040at 885.043 kb on + strand, within OKGIIK_04040at 885.043 kb on + strand, within OKGIIK_04040at 885.043 kb on + strand, within OKGIIK_04040at 885.043 kb on + strand, within OKGIIK_04040at 885.043 kb on + strand, within OKGIIK_04040at 885.043 kb on + strand, within OKGIIK_04040at 885.043 kb on + strand, within OKGIIK_04040at 885.043 kb on + strand, within OKGIIK_04040at 885.043 kb on + strand, within OKGIIK_04040at 885.043 kb on + strand, within OKGIIK_04040at 885.043 kb on + strand, within OKGIIK_04040at 885.044 kb on - strand, within OKGIIK_04040at 885.044 kb on - strand, within OKGIIK_04040at 885.044 kb on - strand, within OKGIIK_04040at 885.044 kb on - strand, within OKGIIK_04040at 885.044 kb on - strand, within OKGIIK_04040at 885.044 kb on - strand, within OKGIIK_04040at 885.044 kb on - strand, within OKGIIK_04040at 885.064 kb on + strand, within OKGIIK_04040at 885.064 kb on + strand, within OKGIIK_04040at 885.064 kb on + strand, within OKGIIK_04040at 885.064 kb on + strand, within OKGIIK_04040at 885.065 kb on - strand, within OKGIIK_04040at 885.065 kb on - strand, within OKGIIK_04040at 885.065 kb on - strand, within OKGIIK_04040at 885.148 kb on + strand, within OKGIIK_04040at 885.148 kb on + strand, within OKGIIK_04040at 885.148 kb on + strand, within OKGIIK_04040at 885.149 kb on - strand, within OKGIIK_04040at 885.175 kb on + strand, within OKGIIK_04040at 885.271 kb on + strand, within OKGIIK_04040at 885.271 kb on + strand, within OKGIIK_04040at 885.271 kb on + strand, within OKGIIK_04040at 885.271 kb on + strand, within OKGIIK_04040at 885.271 kb on + strand, within OKGIIK_04040at 885.271 kb on + strand, within OKGIIK_04040at 885.272 kb on - strand, within OKGIIK_04040at 885.272 kb on - strand, within OKGIIK_04040at 885.272 kb on - strand, within OKGIIK_04040at 885.272 kb on - strand, within OKGIIK_04040at 885.272 kb on - strand, within OKGIIK_04040at 885.272 kb on - strand, within OKGIIK_04040at 885.469 kb on + strand, within OKGIIK_04040at 885.469 kb on + strand, within OKGIIK_04040at 885.469 kb on + strand, within OKGIIK_04040at 885.469 kb on + strand, within OKGIIK_04040at 885.469 kb on + strand, within OKGIIK_04040at 885.469 kb on + strand, within OKGIIK_04040at 885.469 kb on + strand, within OKGIIK_04040at 885.469 kb on + strand, within OKGIIK_04040at 885.470 kb on - strand, within OKGIIK_04040at 885.470 kb on - strand, within OKGIIK_04040at 885.470 kb on - strand, within OKGIIK_04040at 885.470 kb on - strand, within OKGIIK_04040at 885.470 kb on - strand, within OKGIIK_04040at 885.486 kb on + strand, within OKGIIK_04040at 885.529 kb on + strand, within OKGIIK_04040at 885.529 kb on + strand, within OKGIIK_04040at 885.530 kb on - strand, within OKGIIK_04040at 885.559 kb on + strand, within OKGIIK_04040at 885.560 kb on - strand, within OKGIIK_04040at 885.560 kb on - strand, within OKGIIK_04040at 885.560 kb on - strand, within OKGIIK_04040at 885.560 kb on - strand, within OKGIIK_04040at 885.560 kb on - strand, within OKGIIK_04040at 885.560 kb on - strand, within OKGIIK_04040at 885.560 kb on - strand, within OKGIIK_04040at 885.560 kb on - strand, within OKGIIK_04040at 885.560 kb on - strand, within OKGIIK_04040at 885.560 kb on - strand, within OKGIIK_04040at 885.560 kb on - strand, within OKGIIK_04040at 885.560 kb on - strand, within OKGIIK_04040at 885.560 kb on - strand, within OKGIIK_04040at 885.560 kb on - strand, within OKGIIK_04040at 885.566 kb on - strand, within OKGIIK_04040at 885.566 kb on - strand, within OKGIIK_04040at 885.607 kb on + strand, within OKGIIK_04040at 885.608 kb on - strand, within OKGIIK_04040at 885.608 kb on - strand, within OKGIIK_04040at 885.608 kb on - strand, within OKGIIK_04040

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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883,515 + OKGIIK_04030 0.73 +0.1
883,677 + OKGIIK_04030 0.78 +0.7
883,677 + OKGIIK_04030 0.78 -1.5
883,677 + OKGIIK_04030 0.78 +1.2
883,677 + OKGIIK_04030 0.78 +0.2
883,677 + OKGIIK_04030 0.78 -0.1
883,677 + OKGIIK_04030 0.78 -1.0
883,705 - OKGIIK_04030 0.79 -0.5
883,810 - OKGIIK_04030 0.83 -1.0
883,821 + OKGIIK_04030 0.84 -2.0
883,872 + OKGIIK_04030 0.85 -0.4
883,872 + OKGIIK_04030 0.85 +0.6
883,872 + OKGIIK_04030 0.85 -2.2
883,873 - OKGIIK_04030 0.85 +0.7
883,873 - OKGIIK_04030 0.85 -0.5
883,873 - OKGIIK_04030 0.85 -0.9
883,887 + OKGIIK_04030 0.86 -0.0
883,887 + OKGIIK_04030 0.86 -0.2
883,887 + OKGIIK_04030 0.86 -0.0
883,888 - OKGIIK_04030 0.86 -0.7
883,888 - OKGIIK_04030 0.86 -1.7
883,888 - OKGIIK_04030 0.86 -1.0
883,888 - OKGIIK_04030 0.86 -0.8
883,929 + OKGIIK_04030 0.87 +0.8
884,118 + -0.4
884,118 + -2.0
884,118 + -0.8
884,118 + -0.2
884,119 - -0.3
884,119 - +1.3
884,151 + +0.6
884,152 - +0.7
884,152 - -0.0
884,623 + OKGIIK_04035 0.82 -1.8
884,624 - OKGIIK_04035 0.82 -1.6
884,624 - OKGIIK_04035 0.82 +1.1
884,767 + +0.6
884,768 - -1.0
884,768 - -0.3
884,768 - -0.8
884,824 + -0.0
884,824 + +0.2
884,824 + -0.6
884,824 + -0.3
884,824 + -0.0
884,825 - -0.1
884,825 - +0.6
884,825 - +1.9
884,825 - -0.4
884,825 - +1.3
884,825 - -0.2
884,825 - -0.8
884,909 + OKGIIK_04040 0.12 -1.0
884,909 + OKGIIK_04040 0.12 -0.6
884,910 - OKGIIK_04040 0.12 -0.3
884,910 - OKGIIK_04040 0.12 +0.4
884,935 + OKGIIK_04040 0.14 +0.3
884,935 + OKGIIK_04040 0.14 +1.8
884,936 - OKGIIK_04040 0.14 -1.0
884,936 - OKGIIK_04040 0.14 +0.1
884,936 - OKGIIK_04040 0.14 -0.6
884,936 - OKGIIK_04040 0.14 +0.9
884,936 - OKGIIK_04040 0.14 +0.5
884,936 - OKGIIK_04040 0.14 +0.7
884,936 - OKGIIK_04040 0.14 +0.6
884,953 + OKGIIK_04040 0.15 +1.2
884,953 + OKGIIK_04040 0.15 +0.3
884,953 + OKGIIK_04040 0.15 +0.1
884,953 + OKGIIK_04040 0.15 +1.6
884,953 + OKGIIK_04040 0.15 +1.1
884,953 + OKGIIK_04040 0.15 +0.1
884,953 + OKGIIK_04040 0.15 +0.2
884,953 + OKGIIK_04040 0.15 -1.3
884,953 + OKGIIK_04040 0.15 -0.0
884,954 - OKGIIK_04040 0.15 -1.2
884,954 - OKGIIK_04040 0.15 -1.2
884,954 - OKGIIK_04040 0.15 +1.1
884,954 - OKGIIK_04040 0.15 -1.1
884,954 - OKGIIK_04040 0.15 -0.1
884,954 - OKGIIK_04040 0.15 +0.2
884,954 - OKGIIK_04040 0.15 -1.1
884,954 - OKGIIK_04040 0.15 -0.6
884,954 - OKGIIK_04040 0.15 +0.9
884,954 - OKGIIK_04040 0.15 +1.0
884,955 + OKGIIK_04040 0.15 -0.2
884,955 + OKGIIK_04040 0.15 -1.6
884,955 + OKGIIK_04040 0.15 -1.8
884,955 + OKGIIK_04040 0.15 -1.1
884,955 + OKGIIK_04040 0.15 -0.8
884,955 + OKGIIK_04040 0.15 +1.1
884,956 - OKGIIK_04040 0.15 -0.4
884,956 - OKGIIK_04040 0.15 -1.2
884,956 - OKGIIK_04040 0.15 +0.5
884,956 - OKGIIK_04040 0.15 -1.0
884,956 - OKGIIK_04040 0.15 +1.4
884,956 - OKGIIK_04040 0.15 -0.8
884,956 - OKGIIK_04040 0.15 +0.4
884,956 - OKGIIK_04040 0.15 +1.3
884,956 - OKGIIK_04040 0.15 -1.4
884,956 - OKGIIK_04040 0.15 +1.8
884,975 - OKGIIK_04040 0.16 -1.0
884,984 + OKGIIK_04040 0.17 -0.3
884,985 - OKGIIK_04040 0.17 -1.6
884,993 - OKGIIK_04040 0.17 -0.4
884,993 - OKGIIK_04040 0.17 -0.0
885,043 + OKGIIK_04040 0.20 -0.2
885,043 + OKGIIK_04040 0.20 +0.2
885,043 + OKGIIK_04040 0.20 -1.2
885,043 + OKGIIK_04040 0.20 -0.4
885,043 + OKGIIK_04040 0.20 -1.9
885,043 + OKGIIK_04040 0.20 +1.2
885,043 + OKGIIK_04040 0.20 +0.3
885,043 + OKGIIK_04040 0.20 -1.3
885,043 + OKGIIK_04040 0.20 -0.4
885,043 + OKGIIK_04040 0.20 +0.6
885,043 + OKGIIK_04040 0.20 -0.9
885,044 - OKGIIK_04040 0.20 +0.7
885,044 - OKGIIK_04040 0.20 -0.1
885,044 - OKGIIK_04040 0.20 +1.6
885,044 - OKGIIK_04040 0.20 -1.2
885,044 - OKGIIK_04040 0.20 -0.0
885,044 - OKGIIK_04040 0.20 +1.2
885,044 - OKGIIK_04040 0.20 -0.8
885,064 + OKGIIK_04040 0.21 -0.1
885,064 + OKGIIK_04040 0.21 -0.4
885,064 + OKGIIK_04040 0.21 +0.1
885,064 + OKGIIK_04040 0.21 +0.6
885,065 - OKGIIK_04040 0.21 -1.9
885,065 - OKGIIK_04040 0.21 +0.5
885,065 - OKGIIK_04040 0.21 +1.6
885,148 + OKGIIK_04040 0.26 +0.2
885,148 + OKGIIK_04040 0.26 +0.4
885,148 + OKGIIK_04040 0.26 +0.6
885,149 - OKGIIK_04040 0.26 -0.8
885,175 + OKGIIK_04040 0.28 +0.2
885,271 + OKGIIK_04040 0.33 +0.6
885,271 + OKGIIK_04040 0.33 +0.1
885,271 + OKGIIK_04040 0.33 -0.6
885,271 + OKGIIK_04040 0.33 +0.6
885,271 + OKGIIK_04040 0.33 -0.4
885,271 + OKGIIK_04040 0.33 -0.6
885,272 - OKGIIK_04040 0.33 -0.2
885,272 - OKGIIK_04040 0.33 -0.4
885,272 - OKGIIK_04040 0.33 -1.0
885,272 - OKGIIK_04040 0.33 +0.3
885,272 - OKGIIK_04040 0.33 +0.2
885,272 - OKGIIK_04040 0.33 +0.1
885,469 + OKGIIK_04040 0.45 -2.5
885,469 + OKGIIK_04040 0.45 +0.4
885,469 + OKGIIK_04040 0.45 -1.6
885,469 + OKGIIK_04040 0.45 -0.2
885,469 + OKGIIK_04040 0.45 -2.3
885,469 + OKGIIK_04040 0.45 -1.2
885,469 + OKGIIK_04040 0.45 +0.1
885,469 + OKGIIK_04040 0.45 -0.6
885,470 - OKGIIK_04040 0.45 +0.0
885,470 - OKGIIK_04040 0.45 -0.9
885,470 - OKGIIK_04040 0.45 -1.4
885,470 - OKGIIK_04040 0.45 +0.6
885,470 - OKGIIK_04040 0.45 +0.4
885,486 + OKGIIK_04040 0.46 +0.2
885,529 + OKGIIK_04040 0.48 -0.8
885,529 + OKGIIK_04040 0.48 -0.8
885,530 - OKGIIK_04040 0.48 -0.8
885,559 + OKGIIK_04040 0.50 +0.3
885,560 - OKGIIK_04040 0.50 +0.4
885,560 - OKGIIK_04040 0.50 -1.8
885,560 - OKGIIK_04040 0.50 -2.3
885,560 - OKGIIK_04040 0.50 -0.8
885,560 - OKGIIK_04040 0.50 -0.4
885,560 - OKGIIK_04040 0.50 -0.1
885,560 - OKGIIK_04040 0.50 -0.0
885,560 - OKGIIK_04040 0.50 +1.0
885,560 - OKGIIK_04040 0.50 -0.4
885,560 - OKGIIK_04040 0.50 +1.3
885,560 - OKGIIK_04040 0.50 +0.2
885,560 - OKGIIK_04040 0.50 -0.4
885,560 - OKGIIK_04040 0.50 -1.1
885,560 - OKGIIK_04040 0.50 -0.5
885,566 - OKGIIK_04040 0.50 +0.0
885,566 - OKGIIK_04040 0.50 -1.0
885,607 + OKGIIK_04040 0.53 +0.6
885,608 - OKGIIK_04040 0.53 +0.2
885,608 - OKGIIK_04040 0.53 -2.0
885,608 - OKGIIK_04040 0.53 -1.8

Or see this region's nucleotide sequence