Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_04030 and OKGIIK_04035 are separated by 24 nucleotides OKGIIK_04035 and OKGIIK_04040 are separated by 4 nucleotides
OKGIIK_04030: OKGIIK_04030 - Transporter, at 881,466 to 884,285
_04030
OKGIIK_04035: OKGIIK_04035 - DeoR/GlpR family DNA-binding transcription regulator, at 884,310 to 884,690
_04035
OKGIIK_04040: OKGIIK_04040 - Beta-galactosidase, at 884,695 to 886,419
_04040
Position (kb)
884
885 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 883.515 kb on + strand, within OKGIIK_04030 at 883.677 kb on + strand, within OKGIIK_04030 at 883.677 kb on + strand, within OKGIIK_04030 at 883.677 kb on + strand, within OKGIIK_04030 at 883.677 kb on + strand, within OKGIIK_04030 at 883.677 kb on + strand, within OKGIIK_04030 at 883.677 kb on + strand, within OKGIIK_04030 at 883.705 kb on - strand, within OKGIIK_04030 at 883.810 kb on - strand, within OKGIIK_04030 at 883.821 kb on + strand, within OKGIIK_04030 at 883.872 kb on + strand, within OKGIIK_04030 at 883.872 kb on + strand, within OKGIIK_04030 at 883.872 kb on + strand, within OKGIIK_04030 at 883.873 kb on - strand, within OKGIIK_04030 at 883.873 kb on - strand, within OKGIIK_04030 at 883.873 kb on - strand, within OKGIIK_04030 at 883.887 kb on + strand, within OKGIIK_04030 at 883.887 kb on + strand, within OKGIIK_04030 at 883.887 kb on + strand, within OKGIIK_04030 at 883.888 kb on - strand, within OKGIIK_04030 at 883.888 kb on - strand, within OKGIIK_04030 at 883.888 kb on - strand, within OKGIIK_04030 at 883.888 kb on - strand, within OKGIIK_04030 at 883.929 kb on + strand, within OKGIIK_04030 at 884.118 kb on + strand at 884.118 kb on + strand at 884.118 kb on + strand at 884.118 kb on + strand at 884.119 kb on - strand at 884.119 kb on - strand at 884.151 kb on + strand at 884.152 kb on - strand at 884.152 kb on - strand at 884.623 kb on + strand, within OKGIIK_04035 at 884.624 kb on - strand, within OKGIIK_04035 at 884.624 kb on - strand, within OKGIIK_04035 at 884.767 kb on + strand at 884.768 kb on - strand at 884.768 kb on - strand at 884.768 kb on - strand at 884.824 kb on + strand at 884.824 kb on + strand at 884.824 kb on + strand at 884.824 kb on + strand at 884.824 kb on + strand at 884.825 kb on - strand at 884.825 kb on - strand at 884.825 kb on - strand at 884.825 kb on - strand at 884.825 kb on - strand at 884.825 kb on - strand at 884.825 kb on - strand at 884.909 kb on + strand, within OKGIIK_04040 at 884.909 kb on + strand, within OKGIIK_04040 at 884.910 kb on - strand, within OKGIIK_04040 at 884.910 kb on - strand, within OKGIIK_04040 at 884.935 kb on + strand, within OKGIIK_04040 at 884.935 kb on + strand, within OKGIIK_04040 at 884.936 kb on - strand, within OKGIIK_04040 at 884.936 kb on - strand, within OKGIIK_04040 at 884.936 kb on - strand, within OKGIIK_04040 at 884.936 kb on - strand, within OKGIIK_04040 at 884.936 kb on - strand, within OKGIIK_04040 at 884.936 kb on - strand, within OKGIIK_04040 at 884.936 kb on - strand, within OKGIIK_04040 at 884.953 kb on + strand, within OKGIIK_04040 at 884.953 kb on + strand, within OKGIIK_04040 at 884.953 kb on + strand, within OKGIIK_04040 at 884.953 kb on + strand, within OKGIIK_04040 at 884.953 kb on + strand, within OKGIIK_04040 at 884.953 kb on + strand, within OKGIIK_04040 at 884.953 kb on + strand, within OKGIIK_04040 at 884.953 kb on + strand, within OKGIIK_04040 at 884.953 kb on + strand, within OKGIIK_04040 at 884.954 kb on - strand, within OKGIIK_04040 at 884.954 kb on - strand, within OKGIIK_04040 at 884.954 kb on - strand, within OKGIIK_04040 at 884.954 kb on - strand, within OKGIIK_04040 at 884.954 kb on - strand, within OKGIIK_04040 at 884.954 kb on - strand, within OKGIIK_04040 at 884.954 kb on - strand, within OKGIIK_04040 at 884.954 kb on - strand, within OKGIIK_04040 at 884.954 kb on - strand, within OKGIIK_04040 at 884.954 kb on - strand, within OKGIIK_04040 at 884.955 kb on + strand, within OKGIIK_04040 at 884.955 kb on + strand, within OKGIIK_04040 at 884.955 kb on + strand, within OKGIIK_04040 at 884.955 kb on + strand, within OKGIIK_04040 at 884.955 kb on + strand, within OKGIIK_04040 at 884.955 kb on + strand, within OKGIIK_04040 at 884.956 kb on - strand, within OKGIIK_04040 at 884.956 kb on - strand, within OKGIIK_04040 at 884.956 kb on - strand, within OKGIIK_04040 at 884.956 kb on - strand, within OKGIIK_04040 at 884.956 kb on - strand, within OKGIIK_04040 at 884.956 kb on - strand, within OKGIIK_04040 at 884.956 kb on - strand, within OKGIIK_04040 at 884.956 kb on - strand, within OKGIIK_04040 at 884.956 kb on - strand, within OKGIIK_04040 at 884.956 kb on - strand, within OKGIIK_04040 at 884.975 kb on - strand, within OKGIIK_04040 at 884.984 kb on + strand, within OKGIIK_04040 at 884.985 kb on - strand, within OKGIIK_04040 at 884.993 kb on - strand, within OKGIIK_04040 at 884.993 kb on - strand, within OKGIIK_04040 at 885.043 kb on + strand, within OKGIIK_04040 at 885.043 kb on + strand, within OKGIIK_04040 at 885.043 kb on + strand, within OKGIIK_04040 at 885.043 kb on + strand, within OKGIIK_04040 at 885.043 kb on + strand, within OKGIIK_04040 at 885.043 kb on + strand, within OKGIIK_04040 at 885.043 kb on + strand, within OKGIIK_04040 at 885.043 kb on + strand, within OKGIIK_04040 at 885.043 kb on + strand, within OKGIIK_04040 at 885.043 kb on + strand, within OKGIIK_04040 at 885.043 kb on + strand, within OKGIIK_04040 at 885.044 kb on - strand, within OKGIIK_04040 at 885.044 kb on - strand, within OKGIIK_04040 at 885.044 kb on - strand, within OKGIIK_04040 at 885.044 kb on - strand, within OKGIIK_04040 at 885.044 kb on - strand, within OKGIIK_04040 at 885.044 kb on - strand, within OKGIIK_04040 at 885.044 kb on - strand, within OKGIIK_04040 at 885.064 kb on + strand, within OKGIIK_04040 at 885.064 kb on + strand, within OKGIIK_04040 at 885.064 kb on + strand, within OKGIIK_04040 at 885.064 kb on + strand, within OKGIIK_04040 at 885.065 kb on - strand, within OKGIIK_04040 at 885.065 kb on - strand, within OKGIIK_04040 at 885.065 kb on - strand, within OKGIIK_04040 at 885.148 kb on + strand, within OKGIIK_04040 at 885.148 kb on + strand, within OKGIIK_04040 at 885.148 kb on + strand, within OKGIIK_04040 at 885.149 kb on - strand, within OKGIIK_04040 at 885.175 kb on + strand, within OKGIIK_04040 at 885.271 kb on + strand, within OKGIIK_04040 at 885.271 kb on + strand, within OKGIIK_04040 at 885.271 kb on + strand, within OKGIIK_04040 at 885.271 kb on + strand, within OKGIIK_04040 at 885.271 kb on + strand, within OKGIIK_04040 at 885.271 kb on + strand, within OKGIIK_04040 at 885.272 kb on - strand, within OKGIIK_04040 at 885.272 kb on - strand, within OKGIIK_04040 at 885.272 kb on - strand, within OKGIIK_04040 at 885.272 kb on - strand, within OKGIIK_04040 at 885.272 kb on - strand, within OKGIIK_04040 at 885.272 kb on - strand, within OKGIIK_04040 at 885.469 kb on + strand, within OKGIIK_04040 at 885.469 kb on + strand, within OKGIIK_04040 at 885.469 kb on + strand, within OKGIIK_04040 at 885.469 kb on + strand, within OKGIIK_04040 at 885.469 kb on + strand, within OKGIIK_04040 at 885.469 kb on + strand, within OKGIIK_04040 at 885.469 kb on + strand, within OKGIIK_04040 at 885.469 kb on + strand, within OKGIIK_04040 at 885.470 kb on - strand, within OKGIIK_04040 at 885.470 kb on - strand, within OKGIIK_04040 at 885.470 kb on - strand, within OKGIIK_04040 at 885.470 kb on - strand, within OKGIIK_04040 at 885.470 kb on - strand, within OKGIIK_04040 at 885.486 kb on + strand, within OKGIIK_04040 at 885.529 kb on + strand, within OKGIIK_04040 at 885.529 kb on + strand, within OKGIIK_04040 at 885.530 kb on - strand, within OKGIIK_04040 at 885.559 kb on + strand, within OKGIIK_04040 at 885.560 kb on - strand, within OKGIIK_04040 at 885.560 kb on - strand, within OKGIIK_04040 at 885.560 kb on - strand, within OKGIIK_04040 at 885.560 kb on - strand, within OKGIIK_04040 at 885.560 kb on - strand, within OKGIIK_04040 at 885.560 kb on - strand, within OKGIIK_04040 at 885.560 kb on - strand, within OKGIIK_04040 at 885.560 kb on - strand, within OKGIIK_04040 at 885.560 kb on - strand, within OKGIIK_04040 at 885.560 kb on - strand, within OKGIIK_04040 at 885.560 kb on - strand, within OKGIIK_04040 at 885.560 kb on - strand, within OKGIIK_04040 at 885.560 kb on - strand, within OKGIIK_04040 at 885.560 kb on - strand, within OKGIIK_04040 at 885.566 kb on - strand, within OKGIIK_04040 at 885.566 kb on - strand, within OKGIIK_04040 at 885.607 kb on + strand, within OKGIIK_04040 at 885.608 kb on - strand, within OKGIIK_04040 at 885.608 kb on - strand, within OKGIIK_04040 at 885.608 kb on - strand, within OKGIIK_04040
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 883,515 + OKGIIK_04030 0.73 +0.1 883,677 + OKGIIK_04030 0.78 +0.7 883,677 + OKGIIK_04030 0.78 -1.5 883,677 + OKGIIK_04030 0.78 +1.2 883,677 + OKGIIK_04030 0.78 +0.2 883,677 + OKGIIK_04030 0.78 -0.1 883,677 + OKGIIK_04030 0.78 -1.0 883,705 - OKGIIK_04030 0.79 -0.5 883,810 - OKGIIK_04030 0.83 -1.0 883,821 + OKGIIK_04030 0.84 -2.0 883,872 + OKGIIK_04030 0.85 -0.4 883,872 + OKGIIK_04030 0.85 +0.6 883,872 + OKGIIK_04030 0.85 -2.2 883,873 - OKGIIK_04030 0.85 +0.7 883,873 - OKGIIK_04030 0.85 -0.5 883,873 - OKGIIK_04030 0.85 -0.9 883,887 + OKGIIK_04030 0.86 -0.0 883,887 + OKGIIK_04030 0.86 -0.2 883,887 + OKGIIK_04030 0.86 -0.0 883,888 - OKGIIK_04030 0.86 -0.7 883,888 - OKGIIK_04030 0.86 -1.7 883,888 - OKGIIK_04030 0.86 -1.0 883,888 - OKGIIK_04030 0.86 -0.8 883,929 + OKGIIK_04030 0.87 +0.8 884,118 + -0.4 884,118 + -2.0 884,118 + -0.8 884,118 + -0.2 884,119 - -0.3 884,119 - +1.3 884,151 + +0.6 884,152 - +0.7 884,152 - -0.0 884,623 + OKGIIK_04035 0.82 -1.8 884,624 - OKGIIK_04035 0.82 -1.6 884,624 - OKGIIK_04035 0.82 +1.1 884,767 + +0.6 884,768 - -1.0 884,768 - -0.3 884,768 - -0.8 884,824 + -0.0 884,824 + +0.2 884,824 + -0.6 884,824 + -0.3 884,824 + -0.0 884,825 - -0.1 884,825 - +0.6 884,825 - +1.9 884,825 - -0.4 884,825 - +1.3 884,825 - -0.2 884,825 - -0.8 884,909 + OKGIIK_04040 0.12 -1.0 884,909 + OKGIIK_04040 0.12 -0.6 884,910 - OKGIIK_04040 0.12 -0.3 884,910 - OKGIIK_04040 0.12 +0.4 884,935 + OKGIIK_04040 0.14 +0.3 884,935 + OKGIIK_04040 0.14 +1.8 884,936 - OKGIIK_04040 0.14 -1.0 884,936 - OKGIIK_04040 0.14 +0.1 884,936 - OKGIIK_04040 0.14 -0.6 884,936 - OKGIIK_04040 0.14 +0.9 884,936 - OKGIIK_04040 0.14 +0.5 884,936 - OKGIIK_04040 0.14 +0.7 884,936 - OKGIIK_04040 0.14 +0.6 884,953 + OKGIIK_04040 0.15 +1.2 884,953 + OKGIIK_04040 0.15 +0.3 884,953 + OKGIIK_04040 0.15 +0.1 884,953 + OKGIIK_04040 0.15 +1.6 884,953 + OKGIIK_04040 0.15 +1.1 884,953 + OKGIIK_04040 0.15 +0.1 884,953 + OKGIIK_04040 0.15 +0.2 884,953 + OKGIIK_04040 0.15 -1.3 884,953 + OKGIIK_04040 0.15 -0.0 884,954 - OKGIIK_04040 0.15 -1.2 884,954 - OKGIIK_04040 0.15 -1.2 884,954 - OKGIIK_04040 0.15 +1.1 884,954 - OKGIIK_04040 0.15 -1.1 884,954 - OKGIIK_04040 0.15 -0.1 884,954 - OKGIIK_04040 0.15 +0.2 884,954 - OKGIIK_04040 0.15 -1.1 884,954 - OKGIIK_04040 0.15 -0.6 884,954 - OKGIIK_04040 0.15 +0.9 884,954 - OKGIIK_04040 0.15 +1.0 884,955 + OKGIIK_04040 0.15 -0.2 884,955 + OKGIIK_04040 0.15 -1.6 884,955 + OKGIIK_04040 0.15 -1.8 884,955 + OKGIIK_04040 0.15 -1.1 884,955 + OKGIIK_04040 0.15 -0.8 884,955 + OKGIIK_04040 0.15 +1.1 884,956 - OKGIIK_04040 0.15 -0.4 884,956 - OKGIIK_04040 0.15 -1.2 884,956 - OKGIIK_04040 0.15 +0.5 884,956 - OKGIIK_04040 0.15 -1.0 884,956 - OKGIIK_04040 0.15 +1.4 884,956 - OKGIIK_04040 0.15 -0.8 884,956 - OKGIIK_04040 0.15 +0.4 884,956 - OKGIIK_04040 0.15 +1.3 884,956 - OKGIIK_04040 0.15 -1.4 884,956 - OKGIIK_04040 0.15 +1.8 884,975 - OKGIIK_04040 0.16 -1.0 884,984 + OKGIIK_04040 0.17 -0.3 884,985 - OKGIIK_04040 0.17 -1.6 884,993 - OKGIIK_04040 0.17 -0.4 884,993 - OKGIIK_04040 0.17 -0.0 885,043 + OKGIIK_04040 0.20 -0.2 885,043 + OKGIIK_04040 0.20 +0.2 885,043 + OKGIIK_04040 0.20 -1.2 885,043 + OKGIIK_04040 0.20 -0.4 885,043 + OKGIIK_04040 0.20 -1.9 885,043 + OKGIIK_04040 0.20 +1.2 885,043 + OKGIIK_04040 0.20 +0.3 885,043 + OKGIIK_04040 0.20 -1.3 885,043 + OKGIIK_04040 0.20 -0.4 885,043 + OKGIIK_04040 0.20 +0.6 885,043 + OKGIIK_04040 0.20 -0.9 885,044 - OKGIIK_04040 0.20 +0.7 885,044 - OKGIIK_04040 0.20 -0.1 885,044 - OKGIIK_04040 0.20 +1.6 885,044 - OKGIIK_04040 0.20 -1.2 885,044 - OKGIIK_04040 0.20 -0.0 885,044 - OKGIIK_04040 0.20 +1.2 885,044 - OKGIIK_04040 0.20 -0.8 885,064 + OKGIIK_04040 0.21 -0.1 885,064 + OKGIIK_04040 0.21 -0.4 885,064 + OKGIIK_04040 0.21 +0.1 885,064 + OKGIIK_04040 0.21 +0.6 885,065 - OKGIIK_04040 0.21 -1.9 885,065 - OKGIIK_04040 0.21 +0.5 885,065 - OKGIIK_04040 0.21 +1.6 885,148 + OKGIIK_04040 0.26 +0.2 885,148 + OKGIIK_04040 0.26 +0.4 885,148 + OKGIIK_04040 0.26 +0.6 885,149 - OKGIIK_04040 0.26 -0.8 885,175 + OKGIIK_04040 0.28 +0.2 885,271 + OKGIIK_04040 0.33 +0.6 885,271 + OKGIIK_04040 0.33 +0.1 885,271 + OKGIIK_04040 0.33 -0.6 885,271 + OKGIIK_04040 0.33 +0.6 885,271 + OKGIIK_04040 0.33 -0.4 885,271 + OKGIIK_04040 0.33 -0.6 885,272 - OKGIIK_04040 0.33 -0.2 885,272 - OKGIIK_04040 0.33 -0.4 885,272 - OKGIIK_04040 0.33 -1.0 885,272 - OKGIIK_04040 0.33 +0.3 885,272 - OKGIIK_04040 0.33 +0.2 885,272 - OKGIIK_04040 0.33 +0.1 885,469 + OKGIIK_04040 0.45 -2.5 885,469 + OKGIIK_04040 0.45 +0.4 885,469 + OKGIIK_04040 0.45 -1.6 885,469 + OKGIIK_04040 0.45 -0.2 885,469 + OKGIIK_04040 0.45 -2.3 885,469 + OKGIIK_04040 0.45 -1.2 885,469 + OKGIIK_04040 0.45 +0.1 885,469 + OKGIIK_04040 0.45 -0.6 885,470 - OKGIIK_04040 0.45 +0.0 885,470 - OKGIIK_04040 0.45 -0.9 885,470 - OKGIIK_04040 0.45 -1.4 885,470 - OKGIIK_04040 0.45 +0.6 885,470 - OKGIIK_04040 0.45 +0.4 885,486 + OKGIIK_04040 0.46 +0.2 885,529 + OKGIIK_04040 0.48 -0.8 885,529 + OKGIIK_04040 0.48 -0.8 885,530 - OKGIIK_04040 0.48 -0.8 885,559 + OKGIIK_04040 0.50 +0.3 885,560 - OKGIIK_04040 0.50 +0.4 885,560 - OKGIIK_04040 0.50 -1.8 885,560 - OKGIIK_04040 0.50 -2.3 885,560 - OKGIIK_04040 0.50 -0.8 885,560 - OKGIIK_04040 0.50 -0.4 885,560 - OKGIIK_04040 0.50 -0.1 885,560 - OKGIIK_04040 0.50 -0.0 885,560 - OKGIIK_04040 0.50 +1.0 885,560 - OKGIIK_04040 0.50 -0.4 885,560 - OKGIIK_04040 0.50 +1.3 885,560 - OKGIIK_04040 0.50 +0.2 885,560 - OKGIIK_04040 0.50 -0.4 885,560 - OKGIIK_04040 0.50 -1.1 885,560 - OKGIIK_04040 0.50 -0.5 885,566 - OKGIIK_04040 0.50 +0.0 885,566 - OKGIIK_04040 0.50 -1.0 885,607 + OKGIIK_04040 0.53 +0.6 885,608 - OKGIIK_04040 0.53 +0.2 885,608 - OKGIIK_04040 0.53 -2.0 885,608 - OKGIIK_04040 0.53 -1.8
Or see this region's nucleotide sequence