Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_03905 and tsaE overlap by 8 nucleotides tsaE and OKGIIK_03915 are separated by 155 nucleotides OKGIIK_03915 and mutL are separated by 44 nucleotides
OKGIIK_03905: OKGIIK_03905 - Bifunctional NAD(P)H-hydrate repair enzyme, at 856,646 to 858,091
_03905
OKGIIK_03910: tsaE - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 858,084 to 858,557
tsaE
OKGIIK_03915: OKGIIK_03915 - N-acetylmuramoyl-L-alanine amidase, at 858,713 to 860,233
_03915
OKGIIK_03920: mutL - DNA mismatch repair endonuclease MutL, at 860,278 to 862,074
mutL
Position (kb) 858
859
860
861 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 858.548 kb on + strand at 858.549 kb on - strand at 858.549 kb on - strand at 858.549 kb on - strand at 858.549 kb on - strand at 858.549 kb on - strand at 858.549 kb on - strand at 858.549 kb on - strand at 858.549 kb on - strand at 858.627 kb on + strand at 858.627 kb on + strand at 858.627 kb on + strand at 858.628 kb on - strand at 858.636 kb on - strand at 858.649 kb on + strand at 858.649 kb on + strand at 858.649 kb on + strand at 858.650 kb on - strand at 858.650 kb on - strand at 858.650 kb on - strand at 858.650 kb on - strand at 860.141 kb on + strand at 860.141 kb on + strand at 860.141 kb on + strand at 860.141 kb on + strand at 860.141 kb on + strand at 860.141 kb on + strand at 860.141 kb on + strand at 860.141 kb on + strand at 860.141 kb on + strand at 860.141 kb on + strand at 860.142 kb on - strand at 860.142 kb on - strand at 860.142 kb on - strand at 860.142 kb on - strand at 860.142 kb on - strand at 860.142 kb on - strand at 860.142 kb on - strand at 860.142 kb on - strand at 860.266 kb on + strand at 860.266 kb on + strand at 860.266 kb on + strand at 860.266 kb on + strand at 860.266 kb on + strand at 860.266 kb on + strand at 860.267 kb on - strand at 860.267 kb on - strand at 860.267 kb on - strand at 860.267 kb on - strand at 860.267 kb on - strand at 860.267 kb on - strand at 860.267 kb on - strand at 860.267 kb on - strand at 860.731 kb on + strand, within mutL at 860.731 kb on + strand, within mutL at 860.731 kb on + strand, within mutL at 860.731 kb on + strand, within mutL at 860.731 kb on + strand, within mutL at 860.731 kb on + strand, within mutL at 860.731 kb on + strand, within mutL at 860.732 kb on - strand, within mutL at 860.732 kb on - strand, within mutL at 860.732 kb on - strand, within mutL at 860.732 kb on - strand, within mutL at 860.732 kb on - strand, within mutL at 860.732 kb on - strand, within mutL at 860.732 kb on - strand, within mutL at 860.732 kb on - strand, within mutL at 860.732 kb on - strand, within mutL at 860.732 kb on - strand, within mutL at 860.732 kb on - strand, within mutL at 861.037 kb on + strand, within mutL at 861.037 kb on + strand, within mutL at 861.037 kb on + strand, within mutL at 861.037 kb on + strand, within mutL at 861.037 kb on + strand, within mutL at 861.037 kb on + strand, within mutL at 861.037 kb on + strand, within mutL at 861.037 kb on + strand, within mutL at 861.037 kb on + strand, within mutL at 861.037 kb on + strand, within mutL at 861.038 kb on - strand, within mutL at 861.038 kb on - strand, within mutL at 861.038 kb on - strand, within mutL at 861.038 kb on - strand, within mutL at 861.038 kb on - strand, within mutL at 861.038 kb on - strand, within mutL at 861.038 kb on - strand, within mutL at 861.038 kb on - strand, within mutL at 861.038 kb on - strand, within mutL at 861.038 kb on - strand, within mutL at 861.038 kb on - strand, within mutL at 861.043 kb on + strand, within mutL at 861.043 kb on + strand, within mutL at 861.043 kb on + strand, within mutL at 861.043 kb on + strand, within mutL at 861.043 kb on + strand, within mutL at 861.043 kb on + strand, within mutL at 861.043 kb on + strand, within mutL at 861.043 kb on + strand, within mutL at 861.043 kb on + strand, within mutL at 861.044 kb on - strand, within mutL at 861.044 kb on - strand, within mutL at 861.044 kb on - strand, within mutL at 861.044 kb on - strand, within mutL at 861.044 kb on - strand, within mutL at 861.044 kb on - strand, within mutL at 861.044 kb on - strand, within mutL at 861.044 kb on - strand, within mutL at 861.044 kb on - strand, within mutL at 861.100 kb on + strand, within mutL at 861.100 kb on + strand, within mutL at 861.100 kb on + strand, within mutL at 861.100 kb on + strand, within mutL at 861.145 kb on + strand, within mutL at 861.145 kb on + strand, within mutL at 861.145 kb on + strand, within mutL at 861.145 kb on + strand, within mutL at 861.145 kb on + strand, within mutL at 861.145 kb on + strand, within mutL at 861.145 kb on + strand, within mutL at 861.145 kb on + strand, within mutL at 861.146 kb on - strand, within mutL at 861.146 kb on - strand, within mutL at 861.146 kb on - strand, within mutL at 861.146 kb on - strand, within mutL at 861.224 kb on + strand, within mutL at 861.225 kb on - strand, within mutL at 861.225 kb on - strand, within mutL
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 858,548 + -0.8 858,549 - -1.4 858,549 - -1.0 858,549 - -0.8 858,549 - +1.9 858,549 - -0.9 858,549 - -1.7 858,549 - -1.1 858,549 - -0.0 858,627 + -0.0 858,627 + -1.2 858,627 + -0.7 858,628 - +1.7 858,636 - +0.2 858,649 + +0.2 858,649 + +1.8 858,649 + -0.0 858,650 - -1.4 858,650 - -1.0 858,650 - +0.4 858,650 - +1.1 860,141 + -0.0 860,141 + -0.8 860,141 + -2.0 860,141 + -0.0 860,141 + +0.9 860,141 + -0.4 860,141 + -1.2 860,141 + +1.2 860,141 + +0.8 860,141 + +1.1 860,142 - +0.7 860,142 - -0.1 860,142 - +2.1 860,142 - -0.2 860,142 - -1.3 860,142 - -1.2 860,142 - -1.4 860,142 - -0.4 860,266 + -0.0 860,266 + +1.1 860,266 + -0.8 860,266 + +0.3 860,266 + -0.0 860,266 + -0.9 860,267 - +0.8 860,267 - -0.2 860,267 - -0.1 860,267 - -0.7 860,267 - -0.2 860,267 - -1.9 860,267 - +0.1 860,267 - -0.2 860,731 + mutL OKGIIK_03920 0.25 -0.1 860,731 + mutL OKGIIK_03920 0.25 -0.2 860,731 + mutL OKGIIK_03920 0.25 -0.6 860,731 + mutL OKGIIK_03920 0.25 +0.0 860,731 + mutL OKGIIK_03920 0.25 -0.8 860,731 + mutL OKGIIK_03920 0.25 -0.1 860,731 + mutL OKGIIK_03920 0.25 -2.0 860,732 - mutL OKGIIK_03920 0.25 -0.4 860,732 - mutL OKGIIK_03920 0.25 -0.1 860,732 - mutL OKGIIK_03920 0.25 +0.6 860,732 - mutL OKGIIK_03920 0.25 -0.2 860,732 - mutL OKGIIK_03920 0.25 -0.7 860,732 - mutL OKGIIK_03920 0.25 +1.0 860,732 - mutL OKGIIK_03920 0.25 -1.4 860,732 - mutL OKGIIK_03920 0.25 -0.6 860,732 - mutL OKGIIK_03920 0.25 +1.3 860,732 - mutL OKGIIK_03920 0.25 +0.3 860,732 - mutL OKGIIK_03920 0.25 -0.0 861,037 + mutL OKGIIK_03920 0.42 +0.0 861,037 + mutL OKGIIK_03920 0.42 +0.6 861,037 + mutL OKGIIK_03920 0.42 -2.8 861,037 + mutL OKGIIK_03920 0.42 +1.2 861,037 + mutL OKGIIK_03920 0.42 -1.0 861,037 + mutL OKGIIK_03920 0.42 -0.2 861,037 + mutL OKGIIK_03920 0.42 +0.4 861,037 + mutL OKGIIK_03920 0.42 +0.3 861,037 + mutL OKGIIK_03920 0.42 -1.9 861,037 + mutL OKGIIK_03920 0.42 -0.1 861,038 - mutL OKGIIK_03920 0.42 +0.8 861,038 - mutL OKGIIK_03920 0.42 -1.9 861,038 - mutL OKGIIK_03920 0.42 -0.4 861,038 - mutL OKGIIK_03920 0.42 -1.1 861,038 - mutL OKGIIK_03920 0.42 +0.4 861,038 - mutL OKGIIK_03920 0.42 +0.8 861,038 - mutL OKGIIK_03920 0.42 +3.3 861,038 - mutL OKGIIK_03920 0.42 -0.6 861,038 - mutL OKGIIK_03920 0.42 -1.4 861,038 - mutL OKGIIK_03920 0.42 +0.2 861,038 - mutL OKGIIK_03920 0.42 +0.6 861,043 + mutL OKGIIK_03920 0.43 -0.2 861,043 + mutL OKGIIK_03920 0.43 -2.3 861,043 + mutL OKGIIK_03920 0.43 +0.6 861,043 + mutL OKGIIK_03920 0.43 -1.0 861,043 + mutL OKGIIK_03920 0.43 +0.8 861,043 + mutL OKGIIK_03920 0.43 -1.9 861,043 + mutL OKGIIK_03920 0.43 +0.2 861,043 + mutL OKGIIK_03920 0.43 -1.2 861,043 + mutL OKGIIK_03920 0.43 +0.2 861,044 - mutL OKGIIK_03920 0.43 -1.7 861,044 - mutL OKGIIK_03920 0.43 -0.7 861,044 - mutL OKGIIK_03920 0.43 -1.2 861,044 - mutL OKGIIK_03920 0.43 +1.0 861,044 - mutL OKGIIK_03920 0.43 +0.4 861,044 - mutL OKGIIK_03920 0.43 -1.0 861,044 - mutL OKGIIK_03920 0.43 -0.2 861,044 - mutL OKGIIK_03920 0.43 +0.9 861,044 - mutL OKGIIK_03920 0.43 +0.6 861,100 + mutL OKGIIK_03920 0.46 +0.6 861,100 + mutL OKGIIK_03920 0.46 +0.3 861,100 + mutL OKGIIK_03920 0.46 -1.0 861,100 + mutL OKGIIK_03920 0.46 -1.0 861,145 + mutL OKGIIK_03920 0.48 +1.9 861,145 + mutL OKGIIK_03920 0.48 -1.8 861,145 + mutL OKGIIK_03920 0.48 +1.8 861,145 + mutL OKGIIK_03920 0.48 -0.2 861,145 + mutL OKGIIK_03920 0.48 -0.0 861,145 + mutL OKGIIK_03920 0.48 -0.3 861,145 + mutL OKGIIK_03920 0.48 -1.4 861,145 + mutL OKGIIK_03920 0.48 -1.8 861,146 - mutL OKGIIK_03920 0.48 -0.8 861,146 - mutL OKGIIK_03920 0.48 -0.6 861,146 - mutL OKGIIK_03920 0.48 -0.5 861,146 - mutL OKGIIK_03920 0.48 +1.3 861,224 + mutL OKGIIK_03920 0.53 -0.3 861,225 - mutL OKGIIK_03920 0.53 -1.0 861,225 - mutL OKGIIK_03920 0.53 +0.6
Or see this region's nucleotide sequence