Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03550
Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A_PIPES with Nickel (II) chloride 424 uM |
---|---|---|---|---|---|
remove | |||||
786,231 | + | pncB | OKGIIK_03545 | 0.23 | -0.2 |
786,231 | + | pncB | OKGIIK_03545 | 0.23 | -1.1 |
786,231 | + | pncB | OKGIIK_03545 | 0.23 | +0.5 |
786,231 | + | pncB | OKGIIK_03545 | 0.23 | -2.5 |
786,231 | + | pncB | OKGIIK_03545 | 0.23 | -0.7 |
786,231 | + | pncB | OKGIIK_03545 | 0.23 | -1.0 |
786,231 | + | pncB | OKGIIK_03545 | 0.23 | -0.9 |
786,231 | + | pncB | OKGIIK_03545 | 0.23 | -1.1 |
786,231 | + | pncB | OKGIIK_03545 | 0.23 | +0.4 |
786,231 | + | pncB | OKGIIK_03545 | 0.23 | -0.4 |
786,231 | + | pncB | OKGIIK_03545 | 0.23 | -2.2 |
786,231 | + | pncB | OKGIIK_03545 | 0.23 | -1.0 |
786,231 | + | pncB | OKGIIK_03545 | 0.23 | -0.8 |
786,231 | + | pncB | OKGIIK_03545 | 0.23 | -0.2 |
786,232 | - | pncB | OKGIIK_03545 | 0.23 | +1.1 |
786,232 | - | pncB | OKGIIK_03545 | 0.23 | -0.4 |
786,232 | - | pncB | OKGIIK_03545 | 0.23 | +1.3 |
786,232 | - | pncB | OKGIIK_03545 | 0.23 | +1.4 |
786,232 | - | pncB | OKGIIK_03545 | 0.23 | +0.4 |
786,232 | - | pncB | OKGIIK_03545 | 0.23 | +1.6 |
786,232 | - | pncB | OKGIIK_03545 | 0.23 | -0.7 |
786,232 | - | pncB | OKGIIK_03545 | 0.23 | -2.2 |
786,232 | - | pncB | OKGIIK_03545 | 0.23 | -1.0 |
786,232 | - | pncB | OKGIIK_03545 | 0.23 | -0.2 |
786,348 | + | pncB | OKGIIK_03545 | 0.33 | -1.0 |
786,348 | + | pncB | OKGIIK_03545 | 0.33 | +1.2 |
786,348 | + | pncB | OKGIIK_03545 | 0.33 | -0.3 |
786,348 | + | pncB | OKGIIK_03545 | 0.33 | -0.6 |
786,348 | + | pncB | OKGIIK_03545 | 0.33 | -0.3 |
786,348 | + | pncB | OKGIIK_03545 | 0.33 | -0.1 |
786,348 | + | pncB | OKGIIK_03545 | 0.33 | -1.1 |
786,348 | + | pncB | OKGIIK_03545 | 0.33 | -1.9 |
786,348 | + | pncB | OKGIIK_03545 | 0.33 | -0.9 |
786,348 | + | pncB | OKGIIK_03545 | 0.33 | -0.6 |
786,348 | + | pncB | OKGIIK_03545 | 0.33 | -1.7 |
786,348 | + | pncB | OKGIIK_03545 | 0.33 | -0.8 |
786,348 | + | pncB | OKGIIK_03545 | 0.33 | -0.8 |
786,349 | - | pncB | OKGIIK_03545 | 0.33 | -1.4 |
786,349 | - | pncB | OKGIIK_03545 | 0.33 | +1.0 |
786,349 | - | pncB | OKGIIK_03545 | 0.33 | +0.2 |
786,349 | - | pncB | OKGIIK_03545 | 0.33 | -1.9 |
786,349 | - | pncB | OKGIIK_03545 | 0.33 | -0.8 |
786,349 | - | pncB | OKGIIK_03545 | 0.33 | -0.4 |
786,349 | - | pncB | OKGIIK_03545 | 0.33 | +1.6 |
786,349 | - | pncB | OKGIIK_03545 | 0.33 | +1.0 |
786,349 | - | pncB | OKGIIK_03545 | 0.33 | -0.8 |
786,349 | - | pncB | OKGIIK_03545 | 0.33 | -0.8 |
786,349 | - | pncB | OKGIIK_03545 | 0.33 | -0.6 |
786,349 | - | pncB | OKGIIK_03545 | 0.33 | -0.8 |
786,349 | - | pncB | OKGIIK_03545 | 0.33 | -1.4 |
786,360 | - | pncB | OKGIIK_03545 | 0.34 | -0.4 |
786,438 | + | pncB | OKGIIK_03545 | 0.41 | -1.5 |
786,438 | + | pncB | OKGIIK_03545 | 0.41 | -1.6 |
786,462 | + | pncB | OKGIIK_03545 | 0.43 | +0.1 |
786,462 | + | pncB | OKGIIK_03545 | 0.43 | +1.9 |
786,480 | + | pncB | OKGIIK_03545 | 0.44 | -1.9 |
786,481 | - | pncB | OKGIIK_03545 | 0.44 | -0.5 |
786,596 | + | pncB | OKGIIK_03545 | 0.54 | +0.2 |
786,596 | + | pncB | OKGIIK_03545 | 0.54 | -1.0 |
786,597 | - | pncB | OKGIIK_03545 | 0.54 | -2.5 |
786,612 | + | pncB | OKGIIK_03545 | 0.55 | -1.0 |
786,612 | + | pncB | OKGIIK_03545 | 0.55 | +0.9 |
786,612 | + | pncB | OKGIIK_03545 | 0.55 | -0.1 |
786,612 | + | pncB | OKGIIK_03545 | 0.55 | -2.2 |
786,613 | - | pncB | OKGIIK_03545 | 0.55 | +0.3 |
786,613 | - | pncB | OKGIIK_03545 | 0.55 | -1.4 |
786,613 | - | pncB | OKGIIK_03545 | 0.55 | -2.4 |
786,613 | - | pncB | OKGIIK_03545 | 0.55 | +0.6 |
786,613 | - | pncB | OKGIIK_03545 | 0.55 | +0.2 |
786,726 | + | pncB | OKGIIK_03545 | 0.65 | -0.5 |
786,726 | + | pncB | OKGIIK_03545 | 0.65 | +0.4 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | +0.2 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | -1.4 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | -1.0 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | -0.0 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | +0.3 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | +0.2 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | +0.2 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | -1.4 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | +2.0 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | +0.1 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | +0.8 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | -0.3 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | -1.0 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | -0.0 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | +0.9 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | +0.6 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | +0.6 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | +0.3 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | -0.0 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | -1.0 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | -0.8 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | -1.0 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | +0.6 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | -1.4 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | +0.2 |
786,762 | + | pncB | OKGIIK_03545 | 0.68 | -1.6 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | -0.8 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | -2.5 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | -1.3 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | -0.9 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | -0.8 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | +0.8 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | -0.1 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | -0.0 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | -0.1 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | +0.3 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | -1.3 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | -1.6 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | +0.2 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | -0.0 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | +0.8 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | -0.6 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | -1.4 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | -0.2 |
786,763 | - | pncB | OKGIIK_03545 | 0.68 | +0.8 |
786,841 | - | pncB | OKGIIK_03545 | 0.75 | -0.2 |
786,921 | + | pncB | OKGIIK_03545 | 0.81 | +0.6 |
786,921 | + | pncB | OKGIIK_03545 | 0.81 | -0.2 |
786,921 | + | pncB | OKGIIK_03545 | 0.81 | -1.2 |
786,921 | + | pncB | OKGIIK_03545 | 0.81 | -1.9 |
786,921 | + | pncB | OKGIIK_03545 | 0.81 | -1.0 |
786,921 | + | pncB | OKGIIK_03545 | 0.81 | +0.9 |
786,921 | + | pncB | OKGIIK_03545 | 0.81 | -1.6 |
786,921 | + | pncB | OKGIIK_03545 | 0.81 | -0.5 |
786,921 | + | pncB | OKGIIK_03545 | 0.81 | +0.8 |
786,921 | + | pncB | OKGIIK_03545 | 0.81 | -0.4 |
786,921 | + | pncB | OKGIIK_03545 | 0.81 | -0.5 |
786,921 | + | pncB | OKGIIK_03545 | 0.81 | -1.2 |
786,921 | + | pncB | OKGIIK_03545 | 0.81 | -0.3 |
786,921 | + | pncB | OKGIIK_03545 | 0.81 | -2.8 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | +0.1 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | +1.3 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | -1.4 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | -0.2 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | -0.2 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | -0.4 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | -1.4 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | +0.6 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | +0.0 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | +0.2 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | +0.2 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | +1.1 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | -1.2 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | +0.1 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | -0.4 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | -1.3 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | +0.3 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | -2.3 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | -0.8 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | -0.0 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | +0.1 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | +0.4 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | +0.2 |
786,922 | - | pncB | OKGIIK_03545 | 0.81 | -2.0 |
786,927 | + | pncB | OKGIIK_03545 | 0.82 | -0.0 |
786,927 | + | pncB | OKGIIK_03545 | 0.82 | +0.1 |
786,927 | + | pncB | OKGIIK_03545 | 0.82 | -0.1 |
786,927 | + | pncB | OKGIIK_03545 | 0.82 | -0.4 |
786,927 | + | pncB | OKGIIK_03545 | 0.82 | +0.6 |
786,927 | + | pncB | OKGIIK_03545 | 0.82 | -0.2 |
786,927 | + | pncB | OKGIIK_03545 | 0.82 | -0.0 |
786,927 | + | pncB | OKGIIK_03545 | 0.82 | +0.2 |
786,927 | + | pncB | OKGIIK_03545 | 0.82 | -1.3 |
786,927 | + | pncB | OKGIIK_03545 | 0.82 | -1.9 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | -0.0 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | +0.6 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | +1.1 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | -1.9 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | -1.3 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | -0.4 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | -1.0 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | +1.1 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | -0.6 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | -0.3 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | -2.0 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | -1.9 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | -0.4 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | -0.0 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | +0.4 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | -1.4 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | +0.1 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | -0.2 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | -0.1 |
786,928 | - | pncB | OKGIIK_03545 | 0.82 | -1.2 |
787,092 | + | +0.8 | |||
787,092 | + | -0.4 | |||
787,092 | + | -1.9 | |||
787,092 | + | +1.1 | |||
787,092 | + | -1.1 | |||
787,092 | + | +0.4 | |||
787,092 | + | +2.3 | |||
787,092 | + | -0.8 | |||
787,092 | + | -1.0 | |||
787,092 | + | -1.2 | |||
787,092 | + | +0.9 | |||
787,092 | + | -0.5 | |||
787,092 | + | -0.5 | |||
787,092 | + | +1.1 | |||
787,093 | - | -0.2 | |||
787,093 | - | +0.4 | |||
787,093 | - | -1.0 | |||
787,093 | - | -0.0 | |||
787,093 | - | +0.2 | |||
787,093 | - | -1.2 | |||
787,093 | - | +1.8 | |||
787,093 | - | -0.6 | |||
787,093 | - | +1.2 | |||
787,093 | - | -2.0 | |||
787,093 | - | +0.2 | |||
787,093 | - | -0.6 | |||
787,093 | - | +1.6 | |||
787,093 | - | -1.8 | |||
787,093 | - | -1.0 | |||
787,093 | - | -0.1 | |||
787,093 | - | -0.6 | |||
787,101 | + | +0.6 | |||
787,101 | + | -1.2 | |||
787,102 | - | -0.9 | |||
787,102 | - | +0.3 | |||
787,102 | - | +0.6 | |||
787,102 | - | -0.4 | |||
787,102 | - | -0.6 | |||
787,102 | - | -0.0 | |||
787,219 | + | -2.0 | |||
787,219 | + | +0.6 | |||
787,219 | + | -0.0 | |||
787,219 | + | -2.0 | |||
787,220 | - | -1.6 | |||
787,220 | - | -1.1 | |||
787,220 | - | -0.2 | |||
787,318 | + | nlpA | OKGIIK_03550 | 0.16 | -0.8 |
787,318 | + | nlpA | OKGIIK_03550 | 0.16 | -0.7 |
787,319 | - | nlpA | OKGIIK_03550 | 0.16 | +0.6 |
787,319 | - | nlpA | OKGIIK_03550 | 0.16 | -1.0 |
787,319 | - | nlpA | OKGIIK_03550 | 0.16 | -0.9 |
787,319 | - | nlpA | OKGIIK_03550 | 0.16 | -1.4 |
787,327 | + | nlpA | OKGIIK_03550 | 0.17 | -1.9 |
787,328 | - | nlpA | OKGIIK_03550 | 0.17 | -3.0 |
787,328 | - | nlpA | OKGIIK_03550 | 0.17 | -2.8 |
787,328 | - | nlpA | OKGIIK_03550 | 0.17 | -1.0 |
787,328 | - | nlpA | OKGIIK_03550 | 0.17 | +0.2 |
787,393 | + | nlpA | OKGIIK_03550 | 0.25 | -0.8 |
787,393 | + | nlpA | OKGIIK_03550 | 0.25 | -1.0 |
787,393 | + | nlpA | OKGIIK_03550 | 0.25 | -1.4 |
787,394 | - | nlpA | OKGIIK_03550 | 0.26 | -1.4 |
787,394 | - | nlpA | OKGIIK_03550 | 0.26 | -1.8 |
787,394 | - | nlpA | OKGIIK_03550 | 0.26 | -1.1 |
787,394 | - | nlpA | OKGIIK_03550 | 0.26 | -1.0 |
787,639 | + | nlpA | OKGIIK_03550 | 0.56 | +0.2 |
787,639 | + | nlpA | OKGIIK_03550 | 0.56 | -0.4 |
787,639 | + | nlpA | OKGIIK_03550 | 0.56 | -0.3 |
787,729 | + | nlpA | OKGIIK_03550 | 0.68 | +0.1 |
787,730 | - | nlpA | OKGIIK_03550 | 0.68 | -1.0 |
787,747 | + | nlpA | OKGIIK_03550 | 0.70 | -2.9 |
787,747 | + | nlpA | OKGIIK_03550 | 0.70 | +0.8 |
787,748 | - | nlpA | OKGIIK_03550 | 0.70 | -1.2 |
787,990 | + | +0.4 | |||
787,990 | + | -0.0 | |||
787,991 | - | -0.0 | |||
787,991 | - | -0.9 | |||
788,015 | + | +1.2 | |||
788,015 | + | -1.6 | |||
788,016 | - | -1.8 | |||
788,025 | - | +0.1 | |||
788,025 | - | +0.3 | |||
788,025 | - | -1.0 | |||
788,025 | - | +2.0 | |||
788,027 | - | +2.0 | |||
788,054 | - | -0.4 | |||
788,054 | - | -1.6 | |||
788,054 | - | +1.2 | |||
788,054 | - | -1.4 | |||
788,054 | - | +0.0 | |||
788,089 | - | +0.5 | |||
788,178 | + | -1.8 | |||
788,178 | + | -1.0 | |||
788,178 | + | -0.4 | |||
788,179 | - | -0.6 | |||
788,179 | - | -0.9 | |||
788,179 | - | -0.4 | |||
788,224 | + | -1.0 | |||
788,224 | + | -1.2 | |||
788,224 | + | -0.2 | |||
788,224 | + | -1.8 | |||
788,224 | + | -0.2 | |||
788,225 | - | +0.4 | |||
788,226 | + | -1.1 | |||
788,226 | + | +0.6 | |||
788,304 | + | metP | OKGIIK_03555 | 0.13 | -0.4 |
788,304 | + | metP | OKGIIK_03555 | 0.13 | -0.4 |
788,304 | + | metP | OKGIIK_03555 | 0.13 | -1.6 |
788,305 | - | metP | OKGIIK_03555 | 0.14 | -1.2 |
788,316 | + | metP | OKGIIK_03555 | 0.15 | -0.2 |
788,316 | + | metP | OKGIIK_03555 | 0.15 | -1.2 |
788,317 | - | metP | OKGIIK_03555 | 0.15 | -1.2 |
788,317 | - | metP | OKGIIK_03555 | 0.15 | +0.3 |
788,317 | - | metP | OKGIIK_03555 | 0.15 | -0.2 |
788,338 | - | metP | OKGIIK_03555 | 0.18 | -0.6 |
788,388 | + | metP | OKGIIK_03555 | 0.26 | -0.4 |
788,628 | + | metP | OKGIIK_03555 | 0.61 | -1.0 |
788,628 | + | metP | OKGIIK_03555 | 0.61 | -2.2 |
788,629 | - | metP | OKGIIK_03555 | 0.61 | -0.2 |
788,629 | - | metP | OKGIIK_03555 | 0.61 | +0.1 |
788,629 | - | metP | OKGIIK_03555 | 0.61 | -1.9 |
788,629 | - | metP | OKGIIK_03555 | 0.61 | -2.5 |
788,629 | - | metP | OKGIIK_03555 | 0.61 | +1.0 |
788,709 | + | metP | OKGIIK_03555 | 0.73 | -2.0 |
788,751 | + | metP | OKGIIK_03555 | 0.79 | -2.0 |
788,752 | - | metP | OKGIIK_03555 | 0.79 | -1.4 |
788,752 | - | metP | OKGIIK_03555 | 0.79 | -1.8 |
Or see this region's nucleotide sequence