Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03320

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntminC and OKGIIK_03315 overlap by 4 nucleotidesOKGIIK_03315 and OKGIIK_03320 overlap by 4 nucleotidesOKGIIK_03320 and OKGIIK_03325 are separated by 192 nucleotides OKGIIK_03310: minC - septum site-determining protein MinC, at 743,788 to 744,564 minC OKGIIK_03315: OKGIIK_03315 - hypothetical protein, at 744,561 to 744,824 _03315 OKGIIK_03320: OKGIIK_03320 - GNAT family N-acetyltransferase, at 744,821 to 745,441 _03320 OKGIIK_03325: OKGIIK_03325 - two-component sensor histidine kinase, at 745,634 to 746,857 _03325 Position (kb) 744 745 746Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 743.985 kb on - strand, within minCat 744.625 kb on + strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.626 kb on - strand, within OKGIIK_03315at 744.634 kb on - strand, within OKGIIK_03315at 744.634 kb on - strand, within OKGIIK_03315at 744.634 kb on - strand, within OKGIIK_03315at 744.759 kb on + strand, within OKGIIK_03315at 744.760 kb on - strand, within OKGIIK_03315at 745.029 kb on + strand, within OKGIIK_03320at 745.030 kb on - strand, within OKGIIK_03320at 745.030 kb on - strand, within OKGIIK_03320at 745.114 kb on - strand, within OKGIIK_03320at 745.131 kb on + strand, within OKGIIK_03320at 745.228 kb on - strand, within OKGIIK_03320at 745.228 kb on - strand, within OKGIIK_03320at 745.327 kb on - strand, within OKGIIK_03320at 745.332 kb on + strand, within OKGIIK_03320at 745.395 kb on - strandat 745.395 kb on - strandat 745.527 kb on + strandat 745.527 kb on + strandat 745.527 kb on + strandat 745.527 kb on + strandat 745.527 kb on + strandat 745.527 kb on + strandat 745.527 kb on + strandat 745.527 kb on + strandat 745.527 kb on + strandat 745.528 kb on - strandat 745.528 kb on - strandat 745.528 kb on - strandat 745.528 kb on - strandat 745.528 kb on - strandat 745.528 kb on - strandat 745.528 kb on - strandat 745.528 kb on - strandat 745.528 kb on - strandat 745.528 kb on - strandat 745.548 kb on + strandat 745.549 kb on - strandat 745.691 kb on + strandat 745.691 kb on + strandat 745.691 kb on + strandat 745.691 kb on + strandat 745.691 kb on + strandat 745.691 kb on + strandat 745.691 kb on + strandat 745.691 kb on + strandat 745.692 kb on - strandat 745.692 kb on - strandat 745.790 kb on + strand, within OKGIIK_03325at 745.790 kb on + strand, within OKGIIK_03325at 745.790 kb on + strand, within OKGIIK_03325at 745.790 kb on + strand, within OKGIIK_03325at 745.790 kb on + strand, within OKGIIK_03325at 745.791 kb on - strand, within OKGIIK_03325at 745.791 kb on - strand, within OKGIIK_03325at 745.791 kb on - strand, within OKGIIK_03325at 745.791 kb on - strand, within OKGIIK_03325at 745.791 kb on - strand, within OKGIIK_03325at 745.811 kb on + strand, within OKGIIK_03325at 745.811 kb on + strand, within OKGIIK_03325at 745.811 kb on + strand, within OKGIIK_03325at 745.811 kb on + strand, within OKGIIK_03325at 745.811 kb on + strand, within OKGIIK_03325at 745.811 kb on + strand, within OKGIIK_03325at 745.811 kb on + strand, within OKGIIK_03325at 745.811 kb on + strand, within OKGIIK_03325at 745.811 kb on + strand, within OKGIIK_03325at 745.811 kb on + strand, within OKGIIK_03325at 745.811 kb on + strand, within OKGIIK_03325at 745.811 kb on + strand, within OKGIIK_03325at 745.811 kb on + strand, within OKGIIK_03325at 745.811 kb on + strand, within OKGIIK_03325at 745.811 kb on + strand, within OKGIIK_03325at 745.812 kb on - strand, within OKGIIK_03325at 745.812 kb on - strand, within OKGIIK_03325at 745.812 kb on - strand, within OKGIIK_03325at 745.812 kb on - strand, within OKGIIK_03325at 745.812 kb on - strand, within OKGIIK_03325at 745.812 kb on - strand, within OKGIIK_03325at 745.812 kb on - strand, within OKGIIK_03325at 745.910 kb on + strand, within OKGIIK_03325at 745.910 kb on + strand, within OKGIIK_03325at 745.910 kb on + strand, within OKGIIK_03325at 745.910 kb on + strand, within OKGIIK_03325at 745.910 kb on + strand, within OKGIIK_03325at 745.910 kb on + strand, within OKGIIK_03325at 745.911 kb on - strand, within OKGIIK_03325at 745.911 kb on - strand, within OKGIIK_03325at 745.911 kb on - strand, within OKGIIK_03325at 745.938 kb on + strand, within OKGIIK_03325at 745.938 kb on + strand, within OKGIIK_03325at 745.938 kb on + strand, within OKGIIK_03325at 745.938 kb on + strand, within OKGIIK_03325at 745.938 kb on + strand, within OKGIIK_03325at 745.938 kb on + strand, within OKGIIK_03325at 745.938 kb on + strand, within OKGIIK_03325at 745.938 kb on + strand, within OKGIIK_03325at 745.938 kb on + strand, within OKGIIK_03325at 745.938 kb on + strand, within OKGIIK_03325at 745.939 kb on - strand, within OKGIIK_03325at 745.939 kb on - strand, within OKGIIK_03325at 745.939 kb on - strand, within OKGIIK_03325at 745.939 kb on - strand, within OKGIIK_03325at 745.939 kb on - strand, within OKGIIK_03325at 745.939 kb on - strand, within OKGIIK_03325at 745.939 kb on - strand, within OKGIIK_03325at 746.051 kb on + strand, within OKGIIK_03325at 746.051 kb on + strand, within OKGIIK_03325at 746.051 kb on + strand, within OKGIIK_03325at 746.052 kb on - strand, within OKGIIK_03325at 746.052 kb on - strand, within OKGIIK_03325at 746.093 kb on + strand, within OKGIIK_03325at 746.093 kb on + strand, within OKGIIK_03325at 746.093 kb on + strand, within OKGIIK_03325at 746.093 kb on + strand, within OKGIIK_03325at 746.093 kb on + strand, within OKGIIK_03325at 746.093 kb on + strand, within OKGIIK_03325at 746.093 kb on + strand, within OKGIIK_03325at 746.094 kb on - strand, within OKGIIK_03325at 746.094 kb on - strand, within OKGIIK_03325at 746.094 kb on - strand, within OKGIIK_03325at 746.094 kb on - strand, within OKGIIK_03325at 746.094 kb on - strand, within OKGIIK_03325at 746.094 kb on - strand, within OKGIIK_03325at 746.094 kb on - strand, within OKGIIK_03325at 746.094 kb on - strand, within OKGIIK_03325at 746.094 kb on - strand, within OKGIIK_03325at 746.094 kb on - strand, within OKGIIK_03325

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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743,985 - minC OKGIIK_03310 0.25 -0.4
744,625 + OKGIIK_03315 0.24 -0.0
744,626 - OKGIIK_03315 0.25 +1.0
744,626 - OKGIIK_03315 0.25 -1.9
744,626 - OKGIIK_03315 0.25 +1.2
744,626 - OKGIIK_03315 0.25 -0.8
744,626 - OKGIIK_03315 0.25 -3.5
744,626 - OKGIIK_03315 0.25 -0.0
744,626 - OKGIIK_03315 0.25 +0.5
744,626 - OKGIIK_03315 0.25 +0.4
744,626 - OKGIIK_03315 0.25 -0.9
744,626 - OKGIIK_03315 0.25 -0.7
744,626 - OKGIIK_03315 0.25 -0.0
744,626 - OKGIIK_03315 0.25 -1.4
744,626 - OKGIIK_03315 0.25 -0.1
744,626 - OKGIIK_03315 0.25 -0.0
744,634 - OKGIIK_03315 0.28 +0.7
744,634 - OKGIIK_03315 0.28 -1.5
744,634 - OKGIIK_03315 0.28 -0.6
744,759 + OKGIIK_03315 0.75 -0.3
744,760 - OKGIIK_03315 0.75 -1.2
745,029 + OKGIIK_03320 0.33 -1.3
745,030 - OKGIIK_03320 0.34 -0.5
745,030 - OKGIIK_03320 0.34 +0.4
745,114 - OKGIIK_03320 0.47 -1.2
745,131 + OKGIIK_03320 0.50 -1.3
745,228 - OKGIIK_03320 0.66 -1.6
745,228 - OKGIIK_03320 0.66 +0.5
745,327 - OKGIIK_03320 0.81 -0.8
745,332 + OKGIIK_03320 0.82 -0.9
745,395 - +1.9
745,395 - +1.9
745,527 + -0.8
745,527 + +1.0
745,527 + +1.0
745,527 + +0.8
745,527 + -1.3
745,527 + -0.2
745,527 + -1.6
745,527 + -0.5
745,527 + -1.5
745,528 - +0.2
745,528 - -1.8
745,528 - -0.3
745,528 - -0.3
745,528 - -1.6
745,528 - -0.3
745,528 - -1.0
745,528 - -0.9
745,528 - -0.5
745,528 - -2.5
745,548 + -1.9
745,549 - -1.4
745,691 + +0.4
745,691 + +0.2
745,691 + -0.2
745,691 + -0.8
745,691 + +0.2
745,691 + -0.4
745,691 + +0.2
745,691 + -0.0
745,692 - +1.4
745,692 - +1.1
745,790 + OKGIIK_03325 0.13 -0.3
745,790 + OKGIIK_03325 0.13 +1.3
745,790 + OKGIIK_03325 0.13 +0.8
745,790 + OKGIIK_03325 0.13 +0.6
745,790 + OKGIIK_03325 0.13 +0.1
745,791 - OKGIIK_03325 0.13 -0.8
745,791 - OKGIIK_03325 0.13 -1.4
745,791 - OKGIIK_03325 0.13 -1.6
745,791 - OKGIIK_03325 0.13 +1.1
745,791 - OKGIIK_03325 0.13 +1.3
745,811 + OKGIIK_03325 0.14 +0.6
745,811 + OKGIIK_03325 0.14 -0.3
745,811 + OKGIIK_03325 0.14 -0.0
745,811 + OKGIIK_03325 0.14 -1.4
745,811 + OKGIIK_03325 0.14 -1.6
745,811 + OKGIIK_03325 0.14 -1.0
745,811 + OKGIIK_03325 0.14 -1.3
745,811 + OKGIIK_03325 0.14 -1.6
745,811 + OKGIIK_03325 0.14 -0.3
745,811 + OKGIIK_03325 0.14 +0.6
745,811 + OKGIIK_03325 0.14 +0.6
745,811 + OKGIIK_03325 0.14 +1.0
745,811 + OKGIIK_03325 0.14 +0.0
745,811 + OKGIIK_03325 0.14 -1.9
745,811 + OKGIIK_03325 0.14 -0.4
745,812 - OKGIIK_03325 0.15 -0.8
745,812 - OKGIIK_03325 0.15 -2.1
745,812 - OKGIIK_03325 0.15 +0.6
745,812 - OKGIIK_03325 0.15 -1.6
745,812 - OKGIIK_03325 0.15 -1.2
745,812 - OKGIIK_03325 0.15 -0.8
745,812 - OKGIIK_03325 0.15 -0.6
745,910 + OKGIIK_03325 0.23 -0.4
745,910 + OKGIIK_03325 0.23 -0.8
745,910 + OKGIIK_03325 0.23 -1.9
745,910 + OKGIIK_03325 0.23 -0.4
745,910 + OKGIIK_03325 0.23 +1.1
745,910 + OKGIIK_03325 0.23 -1.3
745,911 - OKGIIK_03325 0.23 -0.6
745,911 - OKGIIK_03325 0.23 +0.2
745,911 - OKGIIK_03325 0.23 +0.5
745,938 + OKGIIK_03325 0.25 +0.7
745,938 + OKGIIK_03325 0.25 +0.5
745,938 + OKGIIK_03325 0.25 -0.0
745,938 + OKGIIK_03325 0.25 +0.8
745,938 + OKGIIK_03325 0.25 -1.4
745,938 + OKGIIK_03325 0.25 +1.3
745,938 + OKGIIK_03325 0.25 -0.0
745,938 + OKGIIK_03325 0.25 -1.3
745,938 + OKGIIK_03325 0.25 -0.0
745,938 + OKGIIK_03325 0.25 +0.3
745,939 - OKGIIK_03325 0.25 -0.4
745,939 - OKGIIK_03325 0.25 -0.8
745,939 - OKGIIK_03325 0.25 -0.8
745,939 - OKGIIK_03325 0.25 -1.3
745,939 - OKGIIK_03325 0.25 -1.6
745,939 - OKGIIK_03325 0.25 +1.1
745,939 - OKGIIK_03325 0.25 -0.3
746,051 + OKGIIK_03325 0.34 -1.4
746,051 + OKGIIK_03325 0.34 +1.5
746,051 + OKGIIK_03325 0.34 +1.2
746,052 - OKGIIK_03325 0.34 -0.1
746,052 - OKGIIK_03325 0.34 -0.6
746,093 + OKGIIK_03325 0.38 -0.7
746,093 + OKGIIK_03325 0.38 -1.3
746,093 + OKGIIK_03325 0.38 +0.8
746,093 + OKGIIK_03325 0.38 +0.2
746,093 + OKGIIK_03325 0.38 +0.8
746,093 + OKGIIK_03325 0.38 -0.4
746,093 + OKGIIK_03325 0.38 +1.0
746,094 - OKGIIK_03325 0.38 -0.8
746,094 - OKGIIK_03325 0.38 -1.0
746,094 - OKGIIK_03325 0.38 -1.4
746,094 - OKGIIK_03325 0.38 -0.5
746,094 - OKGIIK_03325 0.38 -0.2
746,094 - OKGIIK_03325 0.38 -1.0
746,094 - OKGIIK_03325 0.38 -1.0
746,094 - OKGIIK_03325 0.38 +0.3
746,094 - OKGIIK_03325 0.38 +0.9
746,094 - OKGIIK_03325 0.38 +0.2

Or see this region's nucleotide sequence