Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gstA and sspB overlap by 14 nucleotides sspB and OKGIIK_03030 are separated by 42 nucleotides OKGIIK_03030 and OKGIIK_03035 overlap by 4 nucleotides
OKGIIK_03020: gstA - stringent starvation protein A, at 687,110 to 687,748
gstA
OKGIIK_03025: sspB - ClpXP protease specificity-enhancing factor, at 687,735 to 688,187
sspB
OKGIIK_03030: OKGIIK_03030 - DUF3301 domain-containing protein, at 688,230 to 688,634
_03030
OKGIIK_03035: OKGIIK_03035 - hypothetical protein, at 688,631 to 691,780
_03035
Position (kb) 688
689 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 687.275 kb on + strand, within gstA at 687.275 kb on + strand, within gstA at 687.341 kb on + strand, within gstA at 687.342 kb on - strand, within gstA at 687.342 kb on - strand, within gstA at 687.342 kb on - strand, within gstA at 687.356 kb on + strand, within gstA at 687.357 kb on - strand, within gstA at 687.660 kb on - strand, within gstA at 687.777 kb on + strand at 687.777 kb on + strand at 687.777 kb on + strand at 687.778 kb on - strand at 687.795 kb on + strand, within sspB at 687.795 kb on + strand, within sspB at 687.795 kb on + strand, within sspB at 687.795 kb on + strand, within sspB at 687.795 kb on + strand, within sspB at 687.796 kb on - strand, within sspB at 687.796 kb on - strand, within sspB at 687.796 kb on - strand, within sspB at 687.796 kb on - strand, within sspB at 687.796 kb on - strand, within sspB at 687.796 kb on - strand, within sspB at 687.796 kb on - strand, within sspB at 687.796 kb on - strand, within sspB at 687.796 kb on - strand, within sspB at 687.796 kb on - strand, within sspB at 687.796 kb on - strand, within sspB at 687.828 kb on + strand, within sspB at 687.828 kb on + strand, within sspB at 687.828 kb on + strand, within sspB at 687.828 kb on + strand, within sspB at 687.828 kb on + strand, within sspB at 687.829 kb on - strand, within sspB at 687.829 kb on - strand, within sspB at 687.829 kb on - strand, within sspB at 687.829 kb on - strand, within sspB at 687.829 kb on - strand, within sspB at 687.829 kb on - strand, within sspB at 687.829 kb on - strand, within sspB at 687.829 kb on - strand, within sspB at 687.829 kb on - strand, within sspB at 687.829 kb on - strand, within sspB at 688.023 kb on + strand, within sspB at 688.023 kb on + strand, within sspB at 688.023 kb on + strand, within sspB at 688.023 kb on + strand, within sspB at 688.023 kb on + strand, within sspB at 688.023 kb on + strand, within sspB at 688.023 kb on + strand, within sspB at 688.023 kb on + strand, within sspB at 688.023 kb on + strand, within sspB at 688.023 kb on + strand, within sspB at 688.023 kb on + strand, within sspB at 688.023 kb on + strand, within sspB at 688.023 kb on + strand, within sspB at 688.023 kb on + strand, within sspB at 688.024 kb on - strand, within sspB at 688.024 kb on - strand, within sspB at 688.024 kb on - strand, within sspB at 688.024 kb on - strand, within sspB at 688.024 kb on - strand, within sspB at 688.024 kb on - strand, within sspB at 688.024 kb on - strand, within sspB at 688.024 kb on - strand, within sspB at 688.024 kb on - strand, within sspB at 688.024 kb on - strand, within sspB at 688.024 kb on - strand, within sspB at 688.079 kb on + strand, within sspB at 688.185 kb on + strand at 688.185 kb on + strand at 688.185 kb on + strand at 688.185 kb on + strand at 688.185 kb on + strand at 688.185 kb on + strand at 688.185 kb on + strand at 688.185 kb on + strand at 688.185 kb on + strand at 688.185 kb on + strand at 688.185 kb on + strand at 688.185 kb on + strand at 688.186 kb on - strand at 688.186 kb on - strand at 688.186 kb on - strand at 688.186 kb on - strand at 688.186 kb on - strand at 688.186 kb on - strand at 688.186 kb on - strand at 688.186 kb on - strand at 688.186 kb on - strand at 688.186 kb on - strand at 688.186 kb on - strand at 688.186 kb on - strand at 688.186 kb on - strand at 688.191 kb on + strand at 688.191 kb on + strand at 688.191 kb on + strand at 688.192 kb on - strand at 688.209 kb on + strand at 688.209 kb on + strand at 688.209 kb on + strand at 688.426 kb on + strand, within OKGIIK_03030 at 688.427 kb on - strand, within OKGIIK_03030 at 688.427 kb on - strand, within OKGIIK_03030 at 688.427 kb on - strand, within OKGIIK_03030 at 688.427 kb on - strand, within OKGIIK_03030 at 688.427 kb on - strand, within OKGIIK_03030 at 688.427 kb on - strand, within OKGIIK_03030 at 688.427 kb on - strand, within OKGIIK_03030 at 688.427 kb on - strand, within OKGIIK_03030 at 688.978 kb on + strand, within OKGIIK_03035 at 688.979 kb on - strand, within OKGIIK_03035 at 688.979 kb on - strand, within OKGIIK_03035 at 689.039 kb on + strand, within OKGIIK_03035 at 689.039 kb on + strand, within OKGIIK_03035 at 689.040 kb on - strand, within OKGIIK_03035 at 689.040 kb on - strand, within OKGIIK_03035 at 689.040 kb on - strand, within OKGIIK_03035 at 689.040 kb on - strand, within OKGIIK_03035 at 689.085 kb on - strand, within OKGIIK_03035 at 689.085 kb on - strand, within OKGIIK_03035 at 689.085 kb on - strand, within OKGIIK_03035 at 689.085 kb on - strand, within OKGIIK_03035 at 689.096 kb on - strand, within OKGIIK_03035 at 689.125 kb on - strand, within OKGIIK_03035 at 689.137 kb on + strand, within OKGIIK_03035 at 689.138 kb on - strand, within OKGIIK_03035 at 689.138 kb on - strand, within OKGIIK_03035 at 689.138 kb on - strand, within OKGIIK_03035 at 689.165 kb on + strand, within OKGIIK_03035 at 689.165 kb on + strand, within OKGIIK_03035 at 689.166 kb on - strand, within OKGIIK_03035 at 689.166 kb on - strand, within OKGIIK_03035 at 689.166 kb on - strand, within OKGIIK_03035 at 689.166 kb on - strand, within OKGIIK_03035 at 689.166 kb on - strand, within OKGIIK_03035 at 689.166 kb on - strand, within OKGIIK_03035 at 689.166 kb on - strand, within OKGIIK_03035 at 689.615 kb on + strand, within OKGIIK_03035 at 689.615 kb on + strand, within OKGIIK_03035 at 689.615 kb on + strand, within OKGIIK_03035 at 689.615 kb on + strand, within OKGIIK_03035
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 687,275 + gstA OKGIIK_03020 0.26 -1.5 687,275 + gstA OKGIIK_03020 0.26 -0.1 687,341 + gstA OKGIIK_03020 0.36 -0.5 687,342 - gstA OKGIIK_03020 0.36 -2.2 687,342 - gstA OKGIIK_03020 0.36 +0.7 687,342 - gstA OKGIIK_03020 0.36 -1.6 687,356 + gstA OKGIIK_03020 0.38 -1.1 687,357 - gstA OKGIIK_03020 0.39 -0.7 687,660 - gstA OKGIIK_03020 0.86 -2.3 687,777 + +0.9 687,777 + +0.6 687,777 + -0.5 687,778 - -0.1 687,795 + sspB OKGIIK_03025 0.13 -0.8 687,795 + sspB OKGIIK_03025 0.13 +1.2 687,795 + sspB OKGIIK_03025 0.13 +0.2 687,795 + sspB OKGIIK_03025 0.13 -0.2 687,795 + sspB OKGIIK_03025 0.13 +0.0 687,796 - sspB OKGIIK_03025 0.13 -1.3 687,796 - sspB OKGIIK_03025 0.13 +0.8 687,796 - sspB OKGIIK_03025 0.13 +0.9 687,796 - sspB OKGIIK_03025 0.13 -1.6 687,796 - sspB OKGIIK_03025 0.13 -0.6 687,796 - sspB OKGIIK_03025 0.13 +1.2 687,796 - sspB OKGIIK_03025 0.13 -2.2 687,796 - sspB OKGIIK_03025 0.13 -1.1 687,796 - sspB OKGIIK_03025 0.13 +0.5 687,796 - sspB OKGIIK_03025 0.13 -0.7 687,796 - sspB OKGIIK_03025 0.13 -0.4 687,828 + sspB OKGIIK_03025 0.21 -0.8 687,828 + sspB OKGIIK_03025 0.21 -1.1 687,828 + sspB OKGIIK_03025 0.21 -0.5 687,828 + sspB OKGIIK_03025 0.21 -1.9 687,828 + sspB OKGIIK_03025 0.21 -0.1 687,829 - sspB OKGIIK_03025 0.21 -0.5 687,829 - sspB OKGIIK_03025 0.21 +0.1 687,829 - sspB OKGIIK_03025 0.21 +0.2 687,829 - sspB OKGIIK_03025 0.21 -0.5 687,829 - sspB OKGIIK_03025 0.21 -2.4 687,829 - sspB OKGIIK_03025 0.21 -0.5 687,829 - sspB OKGIIK_03025 0.21 -0.6 687,829 - sspB OKGIIK_03025 0.21 -1.9 687,829 - sspB OKGIIK_03025 0.21 +0.1 687,829 - sspB OKGIIK_03025 0.21 -0.9 688,023 + sspB OKGIIK_03025 0.64 -0.1 688,023 + sspB OKGIIK_03025 0.64 -1.2 688,023 + sspB OKGIIK_03025 0.64 +0.5 688,023 + sspB OKGIIK_03025 0.64 +0.3 688,023 + sspB OKGIIK_03025 0.64 +0.4 688,023 + sspB OKGIIK_03025 0.64 +0.2 688,023 + sspB OKGIIK_03025 0.64 -2.9 688,023 + sspB OKGIIK_03025 0.64 +0.4 688,023 + sspB OKGIIK_03025 0.64 -1.3 688,023 + sspB OKGIIK_03025 0.64 -0.9 688,023 + sspB OKGIIK_03025 0.64 +0.7 688,023 + sspB OKGIIK_03025 0.64 -0.2 688,023 + sspB OKGIIK_03025 0.64 +0.4 688,023 + sspB OKGIIK_03025 0.64 +0.9 688,024 - sspB OKGIIK_03025 0.64 +0.1 688,024 - sspB OKGIIK_03025 0.64 -0.6 688,024 - sspB OKGIIK_03025 0.64 -0.3 688,024 - sspB OKGIIK_03025 0.64 -0.5 688,024 - sspB OKGIIK_03025 0.64 -0.5 688,024 - sspB OKGIIK_03025 0.64 -0.5 688,024 - sspB OKGIIK_03025 0.64 +0.2 688,024 - sspB OKGIIK_03025 0.64 -0.7 688,024 - sspB OKGIIK_03025 0.64 -0.8 688,024 - sspB OKGIIK_03025 0.64 -1.6 688,024 - sspB OKGIIK_03025 0.64 -1.6 688,079 + sspB OKGIIK_03025 0.76 -0.6 688,185 + -0.8 688,185 + -1.0 688,185 + -0.2 688,185 + -2.5 688,185 + +0.2 688,185 + +0.5 688,185 + +0.4 688,185 + -1.8 688,185 + -0.5 688,185 + -1.3 688,185 + +0.4 688,185 + -0.7 688,186 - +1.5 688,186 - -2.2 688,186 - -0.5 688,186 - -0.5 688,186 - -1.1 688,186 - +0.2 688,186 - -1.6 688,186 - -0.8 688,186 - +0.1 688,186 - -1.3 688,186 - +1.5 688,186 - -0.1 688,186 - -0.3 688,191 + -0.9 688,191 + +1.3 688,191 + +1.9 688,192 - -0.1 688,209 + -0.3 688,209 + -0.7 688,209 + -1.3 688,426 + OKGIIK_03030 0.48 -1.6 688,427 - OKGIIK_03030 0.49 -0.8 688,427 - OKGIIK_03030 0.49 -0.5 688,427 - OKGIIK_03030 0.49 -0.5 688,427 - OKGIIK_03030 0.49 +0.0 688,427 - OKGIIK_03030 0.49 -1.3 688,427 - OKGIIK_03030 0.49 -1.1 688,427 - OKGIIK_03030 0.49 -0.8 688,427 - OKGIIK_03030 0.49 -0.1 688,978 + OKGIIK_03035 0.11 -0.9 688,979 - OKGIIK_03035 0.11 -0.8 688,979 - OKGIIK_03035 0.11 +0.1 689,039 + OKGIIK_03035 0.13 -0.5 689,039 + OKGIIK_03035 0.13 +1.2 689,040 - OKGIIK_03035 0.13 -0.0 689,040 - OKGIIK_03035 0.13 -0.3 689,040 - OKGIIK_03035 0.13 -0.1 689,040 - OKGIIK_03035 0.13 -1.6 689,085 - OKGIIK_03035 0.14 +0.7 689,085 - OKGIIK_03035 0.14 +0.5 689,085 - OKGIIK_03035 0.14 -0.3 689,085 - OKGIIK_03035 0.14 -0.1 689,096 - OKGIIK_03035 0.15 +1.0 689,125 - OKGIIK_03035 0.16 -1.5 689,137 + OKGIIK_03035 0.16 -0.5 689,138 - OKGIIK_03035 0.16 +0.3 689,138 - OKGIIK_03035 0.16 -0.0 689,138 - OKGIIK_03035 0.16 +0.3 689,165 + OKGIIK_03035 0.17 -0.5 689,165 + OKGIIK_03035 0.17 +1.5 689,166 - OKGIIK_03035 0.17 -0.3 689,166 - OKGIIK_03035 0.17 +0.6 689,166 - OKGIIK_03035 0.17 +1.2 689,166 - OKGIIK_03035 0.17 -0.3 689,166 - OKGIIK_03035 0.17 +0.1 689,166 - OKGIIK_03035 0.17 -0.5 689,166 - OKGIIK_03035 0.17 +0.7 689,615 + OKGIIK_03035 0.31 +0.0 689,615 + OKGIIK_03035 0.31 -0.9 689,615 + OKGIIK_03035 0.31 +0.0 689,615 + OKGIIK_03035 0.31 -1.3
Or see this region's nucleotide sequence