Experiment: R2A_PIPES with Nickel (II) chloride 424 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02995 and degQ are separated by 4 nucleotides degQ and petA are separated by 163 nucleotides petA and qcrB,petB overlap by 1 nucleotides
OKGIIK_02995: OKGIIK_02995 - Lytic transglycosylase, at 681,902 to 683,041
_02995
OKGIIK_03000: degQ - peptidase S1, at 683,046 to 684,215
degQ
OKGIIK_03005: petA - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 684,379 to 684,984
petA
OKGIIK_03010: qcrB,petB - cytochrome b, at 684,984 to 686,285
qcrB,petB
Position (kb) 683
684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 682.089 kb on - strand, within OKGIIK_02995 at 682.115 kb on + strand, within OKGIIK_02995 at 682.116 kb on - strand, within OKGIIK_02995 at 682.116 kb on - strand, within OKGIIK_02995 at 682.116 kb on - strand, within OKGIIK_02995 at 682.116 kb on - strand, within OKGIIK_02995 at 682.116 kb on - strand, within OKGIIK_02995 at 682.315 kb on - strand, within OKGIIK_02995 at 682.315 kb on - strand, within OKGIIK_02995 at 682.383 kb on - strand, within OKGIIK_02995 at 682.464 kb on - strand, within OKGIIK_02995 at 682.496 kb on + strand, within OKGIIK_02995 at 682.496 kb on + strand, within OKGIIK_02995 at 682.496 kb on + strand, within OKGIIK_02995 at 682.496 kb on + strand, within OKGIIK_02995 at 682.496 kb on + strand, within OKGIIK_02995 at 682.496 kb on + strand, within OKGIIK_02995 at 682.496 kb on + strand, within OKGIIK_02995 at 682.496 kb on + strand, within OKGIIK_02995 at 682.496 kb on + strand, within OKGIIK_02995 at 682.496 kb on + strand, within OKGIIK_02995 at 682.496 kb on + strand, within OKGIIK_02995 at 682.496 kb on + strand, within OKGIIK_02995 at 682.496 kb on + strand, within OKGIIK_02995 at 682.496 kb on + strand, within OKGIIK_02995 at 682.497 kb on - strand, within OKGIIK_02995 at 682.497 kb on - strand, within OKGIIK_02995 at 682.497 kb on - strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.553 kb on + strand, within OKGIIK_02995 at 682.554 kb on - strand, within OKGIIK_02995 at 682.554 kb on - strand, within OKGIIK_02995 at 682.554 kb on - strand, within OKGIIK_02995 at 682.554 kb on - strand, within OKGIIK_02995 at 682.554 kb on - strand, within OKGIIK_02995 at 682.554 kb on - strand, within OKGIIK_02995 at 682.554 kb on - strand, within OKGIIK_02995 at 682.554 kb on - strand, within OKGIIK_02995 at 682.554 kb on - strand, within OKGIIK_02995 at 682.554 kb on - strand, within OKGIIK_02995 at 682.554 kb on - strand, within OKGIIK_02995 at 682.554 kb on - strand, within OKGIIK_02995 at 682.629 kb on - strand, within OKGIIK_02995 at 682.636 kb on + strand, within OKGIIK_02995 at 682.662 kb on - strand, within OKGIIK_02995 at 682.839 kb on - strand, within OKGIIK_02995 at 682.839 kb on - strand, within OKGIIK_02995 at 682.839 kb on - strand, within OKGIIK_02995 at 682.895 kb on + strand, within OKGIIK_02995 at 682.895 kb on + strand, within OKGIIK_02995 at 682.895 kb on + strand, within OKGIIK_02995 at 682.895 kb on + strand, within OKGIIK_02995 at 682.895 kb on + strand, within OKGIIK_02995 at 682.895 kb on + strand, within OKGIIK_02995 at 682.895 kb on + strand, within OKGIIK_02995 at 682.895 kb on + strand, within OKGIIK_02995 at 682.895 kb on + strand, within OKGIIK_02995 at 682.895 kb on + strand, within OKGIIK_02995 at 682.896 kb on - strand, within OKGIIK_02995 at 682.896 kb on - strand, within OKGIIK_02995 at 682.896 kb on - strand, within OKGIIK_02995 at 682.943 kb on + strand at 682.943 kb on + strand at 682.943 kb on + strand at 682.943 kb on + strand at 682.943 kb on + strand at 682.943 kb on + strand at 682.943 kb on + strand at 682.961 kb on + strand at 682.961 kb on + strand at 682.961 kb on + strand at 682.961 kb on + strand at 682.961 kb on + strand at 682.962 kb on - strand at 682.962 kb on - strand at 682.962 kb on - strand at 682.962 kb on - strand at 683.096 kb on + strand at 683.096 kb on + strand at 683.096 kb on + strand at 683.096 kb on + strand at 683.096 kb on + strand at 683.097 kb on - strand at 683.097 kb on - strand at 683.097 kb on - strand at 683.788 kb on + strand, within degQ at 683.788 kb on + strand, within degQ at 683.788 kb on + strand, within degQ at 683.789 kb on - strand, within degQ at 683.789 kb on - strand, within degQ at 683.789 kb on - strand, within degQ at 683.845 kb on + strand, within degQ at 683.845 kb on + strand, within degQ at 683.845 kb on + strand, within degQ at 683.845 kb on + strand, within degQ at 683.845 kb on + strand, within degQ at 683.845 kb on + strand, within degQ at 683.845 kb on + strand, within degQ at 683.845 kb on + strand, within degQ at 683.845 kb on + strand, within degQ at 683.846 kb on - strand, within degQ at 683.846 kb on - strand, within degQ at 683.846 kb on - strand, within degQ at 683.846 kb on - strand, within degQ at 683.846 kb on - strand, within degQ at 683.846 kb on - strand, within degQ at 683.846 kb on - strand, within degQ at 683.953 kb on + strand, within degQ at 683.953 kb on + strand, within degQ at 683.953 kb on + strand, within degQ at 683.953 kb on + strand, within degQ at 683.953 kb on + strand, within degQ at 683.953 kb on + strand, within degQ at 683.953 kb on + strand, within degQ at 683.954 kb on - strand, within degQ at 683.954 kb on - strand, within degQ at 683.954 kb on - strand, within degQ at 683.954 kb on - strand, within degQ at 683.992 kb on + strand, within degQ at 683.993 kb on - strand, within degQ at 683.993 kb on - strand, within degQ at 683.993 kb on - strand, within degQ at 683.993 kb on - strand, within degQ at 683.993 kb on - strand, within degQ at 683.993 kb on - strand, within degQ at 684.038 kb on - strand, within degQ at 684.038 kb on - strand, within degQ at 684.288 kb on + strand at 684.288 kb on + strand at 684.288 kb on + strand at 684.308 kb on + strand at 684.363 kb on + strand at 684.363 kb on + strand at 684.363 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM remove 682,089 - OKGIIK_02995 0.16 -0.6 682,115 + OKGIIK_02995 0.19 +0.8 682,116 - OKGIIK_02995 0.19 -1.5 682,116 - OKGIIK_02995 0.19 -1.3 682,116 - OKGIIK_02995 0.19 -0.7 682,116 - OKGIIK_02995 0.19 -0.2 682,116 - OKGIIK_02995 0.19 -0.6 682,315 - OKGIIK_02995 0.36 +1.2 682,315 - OKGIIK_02995 0.36 +0.5 682,383 - OKGIIK_02995 0.42 +0.5 682,464 - OKGIIK_02995 0.49 +0.5 682,496 + OKGIIK_02995 0.52 -1.1 682,496 + OKGIIK_02995 0.52 -1.1 682,496 + OKGIIK_02995 0.52 -1.6 682,496 + OKGIIK_02995 0.52 +0.5 682,496 + OKGIIK_02995 0.52 +0.3 682,496 + OKGIIK_02995 0.52 +0.4 682,496 + OKGIIK_02995 0.52 -0.9 682,496 + OKGIIK_02995 0.52 +0.8 682,496 + OKGIIK_02995 0.52 -1.4 682,496 + OKGIIK_02995 0.52 +0.5 682,496 + OKGIIK_02995 0.52 +0.1 682,496 + OKGIIK_02995 0.52 -0.8 682,496 + OKGIIK_02995 0.52 -0.9 682,496 + OKGIIK_02995 0.52 -1.8 682,497 - OKGIIK_02995 0.52 +0.1 682,497 - OKGIIK_02995 0.52 -0.4 682,497 - OKGIIK_02995 0.52 +0.2 682,553 + OKGIIK_02995 0.57 +0.9 682,553 + OKGIIK_02995 0.57 +0.2 682,553 + OKGIIK_02995 0.57 -0.3 682,553 + OKGIIK_02995 0.57 -2.6 682,553 + OKGIIK_02995 0.57 -0.1 682,553 + OKGIIK_02995 0.57 -0.8 682,553 + OKGIIK_02995 0.57 +0.5 682,553 + OKGIIK_02995 0.57 -0.7 682,553 + OKGIIK_02995 0.57 -0.5 682,553 + OKGIIK_02995 0.57 -0.3 682,553 + OKGIIK_02995 0.57 -1.0 682,553 + OKGIIK_02995 0.57 -0.3 682,553 + OKGIIK_02995 0.57 -0.5 682,553 + OKGIIK_02995 0.57 -0.6 682,553 + OKGIIK_02995 0.57 +1.7 682,553 + OKGIIK_02995 0.57 -1.8 682,553 + OKGIIK_02995 0.57 -1.1 682,553 + OKGIIK_02995 0.57 -0.7 682,554 - OKGIIK_02995 0.57 +0.2 682,554 - OKGIIK_02995 0.57 -0.5 682,554 - OKGIIK_02995 0.57 -1.1 682,554 - OKGIIK_02995 0.57 -1.4 682,554 - OKGIIK_02995 0.57 +0.7 682,554 - OKGIIK_02995 0.57 -1.1 682,554 - OKGIIK_02995 0.57 -0.7 682,554 - OKGIIK_02995 0.57 +0.8 682,554 - OKGIIK_02995 0.57 -0.1 682,554 - OKGIIK_02995 0.57 +0.3 682,554 - OKGIIK_02995 0.57 +0.2 682,554 - OKGIIK_02995 0.57 -0.5 682,629 - OKGIIK_02995 0.64 -0.5 682,636 + OKGIIK_02995 0.64 +1.3 682,662 - OKGIIK_02995 0.67 -0.1 682,839 - OKGIIK_02995 0.82 -1.6 682,839 - OKGIIK_02995 0.82 -2.3 682,839 - OKGIIK_02995 0.82 +0.3 682,895 + OKGIIK_02995 0.87 +0.5 682,895 + OKGIIK_02995 0.87 -1.1 682,895 + OKGIIK_02995 0.87 +0.5 682,895 + OKGIIK_02995 0.87 -1.8 682,895 + OKGIIK_02995 0.87 +0.8 682,895 + OKGIIK_02995 0.87 -0.1 682,895 + OKGIIK_02995 0.87 +0.4 682,895 + OKGIIK_02995 0.87 -1.5 682,895 + OKGIIK_02995 0.87 -0.1 682,895 + OKGIIK_02995 0.87 -1.6 682,896 - OKGIIK_02995 0.87 -2.4 682,896 - OKGIIK_02995 0.87 -0.4 682,896 - OKGIIK_02995 0.87 -0.1 682,943 + +0.9 682,943 + -1.5 682,943 + -0.1 682,943 + -1.2 682,943 + -1.1 682,943 + -2.1 682,943 + +0.3 682,961 + -1.2 682,961 + -0.1 682,961 + -0.8 682,961 + +0.2 682,961 + -1.0 682,962 - -0.2 682,962 - -0.7 682,962 - +0.1 682,962 - -0.0 683,096 + -2.2 683,096 + -0.8 683,096 + -1.1 683,096 + -1.0 683,096 + +2.0 683,097 - -1.1 683,097 - +0.5 683,097 - +0.5 683,788 + degQ OKGIIK_03000 0.63 -0.5 683,788 + degQ OKGIIK_03000 0.63 -1.6 683,788 + degQ OKGIIK_03000 0.63 -1.3 683,789 - degQ OKGIIK_03000 0.64 -0.6 683,789 - degQ OKGIIK_03000 0.64 -1.8 683,789 - degQ OKGIIK_03000 0.64 -0.5 683,845 + degQ OKGIIK_03000 0.68 -1.3 683,845 + degQ OKGIIK_03000 0.68 -1.8 683,845 + degQ OKGIIK_03000 0.68 -1.8 683,845 + degQ OKGIIK_03000 0.68 -2.1 683,845 + degQ OKGIIK_03000 0.68 -2.5 683,845 + degQ OKGIIK_03000 0.68 -1.1 683,845 + degQ OKGIIK_03000 0.68 -3.0 683,845 + degQ OKGIIK_03000 0.68 -0.8 683,845 + degQ OKGIIK_03000 0.68 -1.1 683,846 - degQ OKGIIK_03000 0.68 -2.7 683,846 - degQ OKGIIK_03000 0.68 -1.3 683,846 - degQ OKGIIK_03000 0.68 -1.3 683,846 - degQ OKGIIK_03000 0.68 -0.8 683,846 - degQ OKGIIK_03000 0.68 -2.7 683,846 - degQ OKGIIK_03000 0.68 -1.5 683,846 - degQ OKGIIK_03000 0.68 -2.4 683,953 + degQ OKGIIK_03000 0.78 -0.9 683,953 + degQ OKGIIK_03000 0.78 -1.1 683,953 + degQ OKGIIK_03000 0.78 -2.1 683,953 + degQ OKGIIK_03000 0.78 -2.5 683,953 + degQ OKGIIK_03000 0.78 -1.9 683,953 + degQ OKGIIK_03000 0.78 -1.3 683,953 + degQ OKGIIK_03000 0.78 -2.5 683,954 - degQ OKGIIK_03000 0.78 -0.9 683,954 - degQ OKGIIK_03000 0.78 -0.5 683,954 - degQ OKGIIK_03000 0.78 -2.1 683,954 - degQ OKGIIK_03000 0.78 +0.1 683,992 + degQ OKGIIK_03000 0.81 -2.9 683,993 - degQ OKGIIK_03000 0.81 -1.3 683,993 - degQ OKGIIK_03000 0.81 -3.4 683,993 - degQ OKGIIK_03000 0.81 -2.1 683,993 - degQ OKGIIK_03000 0.81 -3.4 683,993 - degQ OKGIIK_03000 0.81 -0.8 683,993 - degQ OKGIIK_03000 0.81 -1.9 684,038 - degQ OKGIIK_03000 0.85 -1.5 684,038 - degQ OKGIIK_03000 0.85 -2.6 684,288 + -0.5 684,288 + -0.5 684,288 + -0.8 684,308 + +1.5 684,363 + +1.2 684,363 + +0.5 684,363 + -0.3
Or see this region's nucleotide sequence